IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1374	 70.49	+1	1571684..1573147	-	487	58581162	ada	XOO1539	-	DNA methylation and regulatory protein
1375	 67.15	0	1573159..1574202	+	347	58581163	-	XOO1540	-	hypothetical protein
1376	 69.54	+1	1574171..1574518	+	115	58581164	-	XOO1541	-	hypothetical protein
1377	 66.67	0	1574597..1574851	+	84	58581165	-	XOO1542	-	hypothetical protein
1378	 69.10	+1	1575254..1575787	+	177	58581166	-	XOO1543	-	hypothetical protein
1379	 64.43	0	1575813..1576214	+	133	58581167	-	XOO1544	-	inner membrane protein
1380	 63.79	0	1576560..1576802	-	80	58581168	-	XOO1545	-	hypothetical protein
1381	 66.67	0	1576831..1577490	-	219	122879110	-	XOO1546	-	hypothetical protein
1382	 63.35	0	1577520..1578062	-	180	58581171	rfaY	XOO1548	-	RNA polymerase ECF-type sigma factor
1383	 65.87	0	1577798..1577923	-	41	58581172	rfaY	XOO1549	-	RNA polymerase ECF-type sigma factor
1384	 67.03	0	1578167..1580071	+	634	58581173	deaD	XOO1550	-	ATP-dependent RNA helicase
1385	 64.17	0	1580209..1582731	+	840	58581174	-	XOO1551	-	hypothetical protein
1386	 63.07	0	1582881..1583603	+	240	58581175	-	XOO1552	-	pseudouridylate synthase
1387	 65.85	0	1585117..1585728	-	203	58581177	-	XOO1554	-	hypothetical protein
1388	 65.66	0	1585852..1585950	-	32	121632074	-	XOO4768	-	hypothetical protein
1389	 67.86	+1	1586523..1587023	+	166	122879111	menG	XOO1555	-	ribonuclease activity regulator protein RraA
1390	 63.77	0	1586953..1588641	+	562	58581179	-	XOO1556	-	beta-lactamase
1391	 63.27	0	1588788..1590053	+	421	58581180	yjl094C	XOO1557	-	cation:proton antiporter
1392	 66.83	0	1590112..1591305	-	397	58581181	baeS	XOO1558	-	two-component system sensor protein
1393	 65.12	0	1591302..1593635	-	777	58581182	baeR	XOO1559	-	two-component system regulatory protein
1394	 65.71	0	1591995..1593566	+	523	58581183	ttgF	XOO1560	-	outer membrane channel protein
1395	 66.43	0	1593586..1594422	+	278	58581184	-	XOO1561	-	hypothetical protein
1396	 69.66	+1	1594448..1595551	+	367	58581185	mexC	XOO1562	-	RND efflux membrane fusion protein
1397	 66.27	0	1595548..1598607	+	1019	58581186	acr	XOO1563	-	acriflavin resistance protein
1398	 65.14	0	1598673..1599263	+	196	58581187	-	XOO1564	-	hypothetical protein
1399	 62.68	0	1599395..1601227	+	610	58581188	bapA	XOO1565	-	ABC transporter ATP-binding protein
1400	 56.99	-1	1601303..1601881	-	192	122879112	-	XOO1566	-	transposase
1401	 65.51	0	1601913..1602950	-	345	58581191	-	XOO1568	-	putative transposase
1402	 52.78	-2	1602994..1603209	-	71	58581192	-	XOO1569	-	transposase
1403	 63.11	0	1604285..1605520	+	411	58581195	-	XOO1572	-	transposase
1404	 60.80	0	1605358..1605783	-	141	121632075	-	XOO4769	-	putative ISXo8 transposase
1405	 63.48	0	1605788..1607011	-	407	58581196	-	XOO1573	-	ISxac1 transposase
1406	 54.02	-2	1607027..1607287	-	86	58581197	-	XOO1574	-	putative ISXo8 transposase
1407	 56.05	-2	1608522..1613012	+	1496	58581200	-	XOO1577	-	RhsD protein precursor
1408	 61.20	0	1613552..1614520	+	322	58581201	-	XOO1578	-	putative transposase
1409	 61.62	0	1614733..1614831	-	32	58581202	-	XOO1579	-	putative ISXo8 transposase
1410	 57.14	-1	1614785..1615120	+	111	121632076	-	XOO4770	-	putative ISXo8 transposase
1411	 59.18	-1	1615622..1617130	-	502	58581203	rhsD	XOO1580	-	RhsD protein
1412	 62.23	0	1617736..1618704	+	322	58581204	-	XOO1581	-	transposase
1413	 62.62	0	1619550..1620932	-	460	58581205	-	XOO1582	-	putative ISXo8 transposase
1414	 66.50	0	1620940..1621548	-	202	58581206	coaE	XOO1583	-	dephospho-CoA kinase
1415	 62.50	0	1621562..1622425	-	287	58581207	pilD	XOO1584	-	type IV pre-pilin leader peptidase
1416	 53.23	-2	1622432..1623637	-	401	122879113	pilC	XOO1585	-	fimbrial assembly protein
1417	 58.97	-1	1623965..1624471	+	168	58581209	pilE	XOO1586	-	pilin
1418	 61.54	0	1624537..1626195	+	552	58581210	-	XOO1587	-	putative integral membrane protein
1419	 61.23	0	1626805..1628331	+	508	58581211	-	XOO1588	-	putative integral membrane protein
1420	 61.07	0	1628312..1630099	+	595	58581212	pilB	XOO1589	-	pilus biogenesis protein
1421	 54.12	-2	1630108..1630362	-	84	58581213	fic	XOO1590	-	cell filamentation protein Fic
1422	 65.22	0	1630958..1632409	-	483	58581214	pilR	XOO1591	-	two-component system regulatory protein
1423	 66.23	0	1632680..1634293	-	537	122879114	pilS	XOO1592	-	two-component system sensor protein
1424	 61.62	0	1634527..1635696	+	389	58581216	sucC	XOO1593	-	succinyl-CoA synthetase subunit beta
1425	 64.27	0	1635721..1636596	+	291	58581217	sucD	XOO1594	-	succinyl-CoA synthetase subunit alpha
1426	 66.31	0	1637641..1639299	+	552	58581218	nadE	XOO1595	-	NAD synthetase
1427	 62.93	0	1639457..1640338	-	293	58581219	comL	XOO1596	-	competence lipoprotein
1428	 69.84	+1	1640447..1641454	+	335	58581220	rluD	XOO1597	-	ribosomal large subunit pseudouridine synthase D
1429	 70.76	+1	1641462..1642268	+	268	58581221	-	XOO1598	-	hypothetical protein
1430	 64.50	0	1642289..1642795	+	168	122879115	-	XOO1599	-	hypothetical protein
1431	 64.04	0	1642770..1643150	+	126	58581223	-	XOO1600	-	hypothetical protein
1432	 59.80	-1	1643074..1643175	+	33	121632077	-	XOO4771	-	hypothetical protein
1433	 60.53	0	1643400..1644767	-	455	58581224	ostA	XOO1601	-	trehalose-6-phosphate synthase
1434	 62.24	0	1644764..1646617	-	617	58581225	-	XOO1602	-	hypothetical protein
1435	 66.67	0	1646587..1647351	-	254	58581226	ostB	XOO1603	-	trehalose-6-phosphate phosphatase
1436	 64.46	0	1648663..1651197	-	844	58581227	bfeA	XOO1604	-	ferric enterobactin receptor
1437	 67.61	+1	1651280..1651807	+	175	58581228	-	XOO1605	-	hypothetical protein
1438	 62.90	0	1651903..1653150	-	415	58581229	-	XOO1606	-	hypothetical protein
1439	 66.54	0	1653426..1655027	+	533	122879116	-	XOO1607	-	hypothetical protein
1440	 55.10	-2	1655179..1655325	+	48	58581231	-	XOO1608	-	transposase
1441	 65.56	0	1655332..1656594	-	420	58581232	-	XOO1609	-	hypothetical protein
1442	 65.61	0	1656617..1657372	-	251	161899004	ate1	XOO1611	-	arginyl-tRNA-protein transferase
1443	 66.49	0	1657592..1658173	+	193	122879117	-	XOO1610	-	hypothetical protein
1444	 55.14	-2	1658307..1658792	-	161	58581235	-	XOO1612	-	hypothetical protein
1445	 66.79	0	1659017..1659796	-	259	58581236	rfaY	XOO1613	-	RNA polymerase sigma factor
1446	 65.56	0	1659872..1660414	-	180	58581237	pthX	XOO1614	-	pathogenicity-related protein
1447	 65.59	0	1660603..1661628	-	341	58581238	tesB	XOO1615	-	acyl-CoA thiolesterase II
1448	 69.26	+1	1661579..1662349	-	256	58581239	-	XOO1616	-	hypothetical protein
1449	 63.66	0	1662373..1662837	+	154	58581240	-	XOO1617	-	hypothetical protein
1450	 61.73	0	1662951..1663355	-	134	58581241	-	XOO1618	-	hypothetical protein
1451	 60.75	0	1666618..1666938	+	106	58581243	rplU	XOO1620	-	50S ribosomal protein L21
1452	 62.45	0	1666951..1667211	+	86	58581244	rpmA	XOO1621	-	50S ribosomal protein L27
1453	 65.05	0	1667444..1668496	+	350	58581245	obgE	XOO1622	-	GTPase ObgE
1454	 60.37	0	1668588..1668857	-	89	58581246	rpsT	XOO1623	-	30S ribosomal protein S20
1455	 64.38	0	1668959..1670578	+	539	58581247	mviN	XOO1624	-	virulence factor
1456	 65.33	0	1670597..1671793	+	398	58581248	ribF	XOO1625	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1457	 65.32	0	1671800..1674631	+	943	58581249	ileS	XOO1626	-	isoleucyl-tRNA synthetase
1458	 63.45	0	1674826..1675446	+	206	58581250	lspA	XOO1627	-	lipoprotein signal peptidase
1459	 65.51	0	1675535..1676485	+	316	161899003	ispH	XOO1628	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1460	 59.19	-1	1676999..1677934	+	311	122879118	cyoA	XOO1629	-	cytochrome O ubiquinol oxidase subunit II
1461	 60.53	0	1677913..1679934	+	673	58581253	cyoB	XOO1630	-	cytochrome O ubiquinol oxidase subunit I
1462	 61.77	0	1679931..1680563	+	210	58581254	cyoC	XOO1631	-	cytochrome O ubiquinol oxidase subunit III
1463	 59.23	-1	1680563..1680898	+	111	58581255	cyoD	XOO1632	-	cytochrome O ubiquinol oxidase subunit IV
1464	 62.25	0	1681248..1682945	+	565	122879119	-	XOO1633	-	hypothetical protein
1465	 60.37	0	1683146..1685416	+	756	58581257	vrgS	XOO1634	-	hypothetical protein
1466	 65.33	0	1685410..1687059	+	549	58581258	-	XOO1635	-	hypothetical protein
1467	 63.99	0	1687203..1691342	+	1379	58581259	-	XOO1636	-	hypothetical protein
1468	 65.51	0	1691386..1692423	+	345	58581260	-	XOO1637	-	putative transposase
1469	 63.04	0	1693525..1696419	+	964	58581261	-	XOO1638	-	hypothetical protein
1470	 63.57	0	1697689..1697817	+	42	121632078	-	XOO4774	-	hypothetical protein
1471	 66.73	0	1697836..1700841	+	1001	58581262	-	XOO1639	-	hypothetical protein
1472	 63.93	0	1700857..1701843	+	328	58581263	-	XOO1640	-	IS1404 transposase
1473	 66.54	0	1701840..1703468	-	542	58581264	-	XOO1641	-	hypothetical protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.