IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1344	 66.67	0	1540847..1541050	+	67	121632071	-	XOO4763	-	hypothetical protein
1345	 61.97	0	1541140..1542267	-	375	58581131	-	XOO1508	-	IS1478 transposase
1346	 64.61	0	1542612..1543097	-	161	58581132	-	XOO1509	-	hypothetical protein
1347	 56.02	-2	1543325..1543540	+	71	58581133	cspA	XOO1510	-	major cold shock protein
1348	 66.10	0	1543791..1544321	-	176	58581134	pcp	XOO1511	-	peptidoglycan-associated outer membrane lipoprotein
1349	 66.28	0	1544402..1544914	-	170	58581135	-	XOO1512	-	hypothetical protein
1350	 64.86	0	1544903..1545733	+	276	58581136	moeB	XOO1513	-	molybdopterin biosynthesis protein
1351	 68.10	+1	1545795..1546562	-	255	58581137	-	XOO1514	-	hypothetical protein
1352	 63.89	0	1546562..1546777	-	71	58581138	-	XOO1515	-	hypothetical protein
1353	 64.01	0	1546848..1547714	+	288	58581139	-	XOO1516	-	hypothetical protein
1354	 65.90	0	1547860..1549035	+	391	58581140	gcdH	XOO1517	-	glutaryl-CoA dehydrogenase
1355	 66.18	0	1549050..1549256	+	68	58581141	-	XOO1518	-	hypothetical protein
1356	 67.00	0	1549735..1550328	+	197	121632072	-	XOO4764	-	hypothetical protein
1357	 69.52	+1	1550793..1551143	+	116	58581145	-	XOO1522	-	hypothetical protein
1358	 66.19	0	1551278..1551907	+	209	122879108	gst	XOO1521	-	glutathione S-transferase
1359	 67.44	+1	1552073..1554013	+	646	122879109	-	XOO1523	-	asparagine synthase
1360	 63.42	0	1554230..1554784	+	184	58581147	-	XOO1524	-	hypothetical protein
1361	 61.68	0	1554853..1556436	+	527	58581148	dnaB	XOO1525	-	replicative DNA helicase
1362	 64.33	0	1556503..1557957	+	484	58581149	phr	XOO1526	-	photolyase
1363	 63.09	0	1558374..1559099	+	241	58581150	-	XOO1527	-	OmpA family protein
1364	 58.15	-1	1559198..1559608	+	136	58581151	-	XOO1528	-	short chain dehydrogenase
1365	 63.26	0	1559648..1560616	+	322	58581152	-	XOO1529	-	hypothetical protein
1366	 63.32	0	1560860..1563280	-	806	58581153	fhuA	XOO1530	-	TonB-dependent receptor
1367	 71.57	+2	1565447..1565650	-	67	58581155	phuR	XOO1532	-	outer membrane hemin receptor
1368	 65.45	0	1565869..1566279	+	136	58581156	-	XOO1533	-	hypothetical protein
1369	 63.91	0	1566363..1566761	+	132	58581157	-	XOO1534	-	hypothetical protein
1370	 63.69	0	1566894..1567934	-	346	58581158	-	XOO1535	-	alcohol dehydrogenase
1371	 66.53	0	1568007..1569452	-	481	58581159	yadQ	XOO1536	-	chloride channel
1372	 63.03	0	1570728..1570892	+	54	121632073	-	XOO4766	-	hypothetical protein
1373	 67.77	+1	1571142..1571687	-	181	58581161	ogt	XOO1538	-	6-O-methylguanine-DNA methyltransferase
1374	 70.49	+1	1571684..1573147	-	487	58581162	ada	XOO1539	-	DNA methylation and regulatory protein
1375	 67.15	0	1573159..1574202	+	347	58581163	-	XOO1540	-	hypothetical protein
1376	 69.54	+1	1574171..1574518	+	115	58581164	-	XOO1541	-	hypothetical protein
1377	 66.67	0	1574597..1574851	+	84	58581165	-	XOO1542	-	hypothetical protein
1378	 69.10	+1	1575254..1575787	+	177	58581166	-	XOO1543	-	hypothetical protein
1379	 64.43	0	1575813..1576214	+	133	58581167	-	XOO1544	-	inner membrane protein
1380	 63.79	0	1576560..1576802	-	80	58581168	-	XOO1545	-	hypothetical protein
1381	 66.67	0	1576831..1577490	-	219	122879110	-	XOO1546	-	hypothetical protein
1382	 63.35	0	1577520..1578062	-	180	58581171	rfaY	XOO1548	-	RNA polymerase ECF-type sigma factor
1383	 65.87	0	1577798..1577923	-	41	58581172	rfaY	XOO1549	-	RNA polymerase ECF-type sigma factor
1384	 67.03	0	1578167..1580071	+	634	58581173	deaD	XOO1550	-	ATP-dependent RNA helicase
1385	 64.17	0	1580209..1582731	+	840	58581174	-	XOO1551	-	hypothetical protein
1386	 63.07	0	1582881..1583603	+	240	58581175	-	XOO1552	-	pseudouridylate synthase
1387	 65.85	0	1585117..1585728	-	203	58581177	-	XOO1554	-	hypothetical protein
1388	 65.66	0	1585852..1585950	-	32	121632074	-	XOO4768	-	hypothetical protein
1389	 67.86	+1	1586523..1587023	+	166	122879111	menG	XOO1555	-	ribonuclease activity regulator protein RraA
1390	 63.77	0	1586953..1588641	+	562	58581179	-	XOO1556	-	beta-lactamase
1391	 63.27	0	1588788..1590053	+	421	58581180	yjl094C	XOO1557	-	cation:proton antiporter
1392	 66.83	0	1590112..1591305	-	397	58581181	baeS	XOO1558	-	two-component system sensor protein
1393	 65.12	0	1591302..1593635	-	777	58581182	baeR	XOO1559	-	two-component system regulatory protein
1394	 65.71	0	1591995..1593566	+	523	58581183	ttgF	XOO1560	-	outer membrane channel protein
1395	 66.43	0	1593586..1594422	+	278	58581184	-	XOO1561	-	hypothetical protein
1396	 69.66	+1	1594448..1595551	+	367	58581185	mexC	XOO1562	-	RND efflux membrane fusion protein
1397	 66.27	0	1595548..1598607	+	1019	58581186	acr	XOO1563	-	acriflavin resistance protein
1398	 65.14	0	1598673..1599263	+	196	58581187	-	XOO1564	-	hypothetical protein
1399	 62.68	0	1599395..1601227	+	610	58581188	bapA	XOO1565	-	ABC transporter ATP-binding protein
1400	 56.99	-1	1601303..1601881	-	192	122879112	-	XOO1566	-	transposase
1401	 65.51	0	1601913..1602950	-	345	58581191	-	XOO1568	-	putative transposase
1402	 52.78	-2	1602994..1603209	-	71	58581192	-	XOO1569	-	transposase
1403	 63.11	0	1604285..1605520	+	411	58581195	-	XOO1572	-	transposase
1404	 60.80	0	1605358..1605783	-	141	121632075	-	XOO4769	-	putative ISXo8 transposase
1405	 63.48	0	1605788..1607011	-	407	58581196	-	XOO1573	-	ISxac1 transposase
1406	 54.02	-2	1607027..1607287	-	86	58581197	-	XOO1574	-	putative ISXo8 transposase
1407	 56.05	-2	1608522..1613012	+	1496	58581200	-	XOO1577	-	RhsD protein precursor
1408	 61.20	0	1613552..1614520	+	322	58581201	-	XOO1578	-	putative transposase
1409	 61.62	0	1614733..1614831	-	32	58581202	-	XOO1579	-	putative ISXo8 transposase
1410	 57.14	-1	1614785..1615120	+	111	121632076	-	XOO4770	-	putative ISXo8 transposase
1411	 59.18	-1	1615622..1617130	-	502	58581203	rhsD	XOO1580	-	RhsD protein
1412	 62.23	0	1617736..1618704	+	322	58581204	-	XOO1581	-	transposase
1413	 62.62	0	1619550..1620932	-	460	58581205	-	XOO1582	-	putative ISXo8 transposase
1414	 66.50	0	1620940..1621548	-	202	58581206	coaE	XOO1583	-	dephospho-CoA kinase
1415	 62.50	0	1621562..1622425	-	287	58581207	pilD	XOO1584	-	type IV pre-pilin leader peptidase
1416	 53.23	-2	1622432..1623637	-	401	122879113	pilC	XOO1585	-	fimbrial assembly protein
1417	 58.97	-1	1623965..1624471	+	168	58581209	pilE	XOO1586	-	pilin
1418	 61.54	0	1624537..1626195	+	552	58581210	-	XOO1587	-	putative integral membrane protein
1419	 61.23	0	1626805..1628331	+	508	58581211	-	XOO1588	-	putative integral membrane protein
1420	 61.07	0	1628312..1630099	+	595	58581212	pilB	XOO1589	-	pilus biogenesis protein
1421	 54.12	-2	1630108..1630362	-	84	58581213	fic	XOO1590	-	cell filamentation protein Fic
1422	 65.22	0	1630958..1632409	-	483	58581214	pilR	XOO1591	-	two-component system regulatory protein
1423	 66.23	0	1632680..1634293	-	537	122879114	pilS	XOO1592	-	two-component system sensor protein
1424	 61.62	0	1634527..1635696	+	389	58581216	sucC	XOO1593	-	succinyl-CoA synthetase subunit beta
1425	 64.27	0	1635721..1636596	+	291	58581217	sucD	XOO1594	-	succinyl-CoA synthetase subunit alpha
1426	 66.31	0	1637641..1639299	+	552	58581218	nadE	XOO1595	-	NAD synthetase
1427	 62.93	0	1639457..1640338