IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1316	 63.57	0	1509453..1509968	-	171	58581091	cheW	XOO1468	-	chemotaxis protein
1317	 63.99	0	1509979..1512147	-	722	58581092	mcp	XOO1469	-	chemotaxis protein
1318	 64.19	0	1512216..1514237	-	673	58581093	cheA	XOO1470	-	chemotaxis histidine protein kinase
1319	 61.21	0	1514256..1514585	-	109	58581094	-	XOO1471	-	hypothetical protein
1320	 65.69	0	1515075..1518539	-	1154	58581095	mfd	XOO1472	-	transcription-repair coupling factor
1321	 66.67	0	1518943..1519485	-	180	58581096	-	XOO1473	-	hypothetical protein
1322	 68.14	+1	1519897..1520985	-	362	58581097	-	XOO1474	-	hypothetical protein
1323	 58.91	-1	1521151..1521627	-	158	58581098	-	XOO1475	-	putative transposase
1324	 58.06	-1	1521593..1521964	-	123	58581099	-	XOO1476	-	putative transposase
1325	 63.84	0	1522250..1522816	+	188	58581100	creC	XOO1477	-	two-component system sensor protein
1326	 66.19	0	1522972..1523601	+	209	58581101	-	XOO1478	-	putative transposase
1327	 58.06	-1	1523636..1524007	+	123	58581102	-	XOO1479	-	putative transposase
1328	 58.18	-1	1524029..1524841	-	270	58581103	-	XOO1480	-	cysteine protease
1329	 64.22	0	1525256..1525828	+	190	58581104	creD	XOO1481	-	inner membrane protein
1330	 48.39	-2	1527038..1527130	-	30	58581108	-	XOO1485	-	putative transposase
1331	 64.56	0	1527183..1528082	-	299	58581109	-	XOO1486	-	putative transposase
1332	 57.93	-1	1528170..1528982	-	270	122879107	-	XOO1487	-	cysteine protease
1333	 56.99	-1	1532429..1532521	+	30	58581117	-	XOO1494	-	IS1479 transposase
1334	 57.84	-1	1533035..1533340	-	101	58581120	-	XOO1497	-	cysteine protease
1335	 62.37	0	1533445..1534002	+	185	58581121	-	XOO1498	-	hypothetical protein
1336	 59.77	-1	1534095..1534355	+	86	58581123	nthA	XOO1500	-	nitrilase
1337	 60.57	0	1534101..1534346	-	81	121632069	-	XOO4761	-	hypothetical protein
1338	 62.33	0	1534330..1535298	-	322	58581124	-	XOO1501	-	transposase
1339	 65.84	0	1535367..1536092	+	241	58581125	nthA	XOO1502	-	nitrilase
1340	 65.60	0	1536114..1536674	+	186	121632070	-	XOO4762	-	hypothetical protein
1341	 65.81	0	1536398..1537213	+	271	58581126	-	XOO1503	-	hypothetical protein
1342	 64.67	0	1537282..1538685	+	467	58581127	gltX	XOO1504	-	glutamyl-tRNA synthetase
1343	 66.10	0	1538672..1539205	+	177	58581128	-	XOO1505	-	FUR family transcriptional regulator
1344	 66.67	0	1540847..1541050	+	67	121632071	-	XOO4763	-	hypothetical protein
1345	 61.97	0	1541140..1542267	-	375	58581131	-	XOO1508	-	IS1478 transposase
1346	 64.61	0	1542612..1543097	-	161	58581132	-	XOO1509	-	hypothetical protein
1347	 56.02	-2	1543325..1543540	+	71	58581133	cspA	XOO1510	-	major cold shock protein
1348	 66.10	0	1543791..1544321	-	176	58581134	pcp	XOO1511	-	peptidoglycan-associated outer membrane lipoprotein
1349	 66.28	0	1544402..1544914	-	170	58581135	-	XOO1512	-	hypothetical protein
1350	 64.86	0	1544903..1545733	+	276	58581136	moeB	XOO1513	-	molybdopterin biosynthesis protein
1351	 68.10	+1	1545795..1546562	-	255	58581137	-	XOO1514	-	hypothetical protein
1352	 63.89	0	1546562..1546777	-	71	58581138	-	XOO1515	-	hypothetical protein
1353	 64.01	0	1546848..1547714	+	288	58581139	-	XOO1516	-	hypothetical protein
1354	 65.90	0	1547860..1549035	+	391	58581140	gcdH	XOO1517	-	glutaryl-CoA dehydrogenase
1355	 66.18	0	1549050..1549256	+	68	58581141	-	XOO1518	-	hypothetical protein
1356	 67.00	0	1549735..1550328	+	197	121632072	-	XOO4764	-	hypothetical protein
1357	 69.52	+1	1550793..1551143	+	116	58581145	-	XOO1522	-	hypothetical protein
1358	 66.19	0	1551278..1551907	+	209	122879108	gst	XOO1521	-	glutathione S-transferase
1359	 67.44	+1	1552073..1554013	+	646	122879109	-	XOO1523	-	asparagine synthase
1360	 63.42	0	1554230..1554784	+	184	58581147	-	XOO1524	-	hypothetical protein
1361	 61.68	0	1554853..1556436	+	527	58581148	dnaB	XOO1525	-	replicative DNA helicase
1362	 64.33	0	1556503..1557957	+	484	58581149	phr	XOO1526	-	photolyase
1363	 63.09	0	1558374..1559099	+	241	58581150	-	XOO1527	-	OmpA family protein
1364	 58.15	-1	1559198..1559608	+	136	58581151	-	XOO1528	-	short chain dehydrogenase
1365	 63.26	0	1559648..1560616	+	322	58581152	-	XOO1529	-	hypothetical protein
1366	 63.32	0	1560860..1563280	-	806	58581153	fhuA	XOO1530	-	TonB-dependent receptor
1367	 71.57	+2	1565447..1565650	-	67	58581155	phuR	XOO1532	-	outer membrane hemin receptor
1368	 65.45	0	1565869..1566279	+	136	58581156	-	XOO1533	-	hypothetical protein
1369	 63.91	0	1566363..1566761	+	132	58581157	-	XOO1534	-	hypothetical protein
1370	 63.69	0	1566894..1567934	-	346	58581158	-	XOO1535	-	alcohol dehydrogenase
1371	 66.53	0	1568007..1569452	-	481	58581159	yadQ	XOO1536	-	chloride channel
1372	 63.03	0	1570728..1570892	+	54	121632073	-	XOO4766	-	hypothetical protein
1373	 67.77	+1	1571142..1571687	-	181	58581161	ogt	XOO1538	-	6-O-methylguanine-DNA methyltransferase
1374	 70.49	+1	1571684..1573147	-	487	58581162	ada	XOO1539	-	DNA methylation and regulatory protein
1375	 67.15	0	1573159..1574202	+	347	58581163	-	XOO1540	-	hypothetical protein
1376	 69.54	+1	1574171..1574518	+	115	58581164	-	XOO1541	-	hypothetical protein
1377	 66.67	0	1574597..1574851	+	84	58581165	-	XOO1542	-	hypothetical protein
1378	 69.10	+1	1575254..1575787	+	177	58581166	-	XOO1543	-	hypothetical protein
1379	 64.43	0	1575813..1576214	+	133	58581167	-	XOO1544	-	inner membrane protein
1380	 63.79	0	1576560..1576802	-	80	58581168	-	XOO1545	-	hypothetical protein
1381	 66.67	0	1576831..1577490	-	219	122879110	-	XOO1546	-	hypothetical protein
1382	 63.35	0	1577520..1578062	-	180	58581171	rfaY	XOO1548	-	RNA polymerase ECF-type sigma factor
1383	 65.87	0	1577798..1577923	-	41	58581172	rfaY	XOO1549	-	RNA polymerase ECF-type sigma factor
1384	 67.03	0	1578167..1580071	+	634	58581173	deaD	XOO1550	-	ATP-dependent RNA helicase
1385	 64.17	0	1580209..1582731	+	840	58581174	-	XOO1551	-	hypothetical protein
1386	 63.07	0	1582881..1583603	+	240	58581175	-	XOO1552	-	pseudouridylate synthase
1387	 65.85	0	1585117..1585728	-	203	58581177	-	XOO1554	-	hypothetical protein
1388	 65.66	0	1585852..1585950	-	32	121632074	-	XOO4768	-	hypothetical protein
1389	 67.86	+1	1586523..1587023	+	166	122879111	menG	XOO1555	-	ribonuclease activity regulator protein RraA
1390	 63.77	0	1586953..1588641	+	562	58581179	-	XOO1556	-	beta-lactamase
1391	 63.27	0	1588788..1590053	+	421	58581180	yjl094C	XOO1557	-	cation:proton antiporter
1392	 66.83	0	1590112..1591305	-	397	58581181	baeS	XOO1558	-	two-component system sensor protein
1393	 65.12	0	1591302..1593635	-	777	58581182	baeR	XOO1559	-	two-component system regulatory protein
1394	 65.71	0	1591995..1593566	+	523	58581183	ttgF	XOO1560	-	outer membrane channel protein
1395	 66.43	0	1593586..1594422	+	278	58581184	-	XOO1561	-	hypothetical protein
1396	 69.66	+1	1594448..1595551	+	367	58581185	mexC	XOO1562	-	RND efflux membrane fusion protein
1397	 66.27	0	1595548..1598607	+	1019	58581186	acr	XOO1563	-	acriflavin resistance protein
1398	 65.14	0	1598673..1599263	+	196	58581187	-	XOO1564	-	hypothetical protein
1399	 62.68	0	1599395..1601227	+	610