IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1294	 61.33	0	1476412..1476636	-	74	58581069	-	XOO1446	-	hypothetical protein
1295	 65.06	0	1476636..1478816	-	726	58581070	cstA	XOO1447	-	carbon starvation protein A
1296	 64.71	0	1478775..1479797	+	340	58581071	-	XOO1448	-	pirin
1297	 67.38	+1	1479968..1480246	+	92	58581072	-	XOO1449	-	hypothetical protein
1298	 72.70	+2	1480248..1483232	+	994	58581073	-	XOO1450	-	hypothetical protein
1299	 56.86	-1	1483229..1484176	+	315	58581074	-	XOO1451	-	hypothetical protein
1300	 62.91	0	1486540..1488828	+	762	58581075	-	XOO1452	-	hypothetical protein
1301	 72.98	+2	1488850..1490751	+	633	58581076	-	XOO1453	-	VGR-related protein
1302	 59.40	-1	1492778..1493011	+	77	58581077	-	XOO1454	-	hypothetical protein
1303	 60.78	0	1493008..1493160	+	50	121632067	-	XOO4758	-	hypothetical protein
1304	 61.44	0	1493646..1493798	+	50	121632068	-	XOO4759	-	hypothetical protein
1305	 59.73	-1	1493779..1494585	+	268	122879104	-	XOO1455	-	hypothetical protein
1306	 65.26	0	1494582..1496990	+	802	58581079	-	XOO1456	-	hypothetical protein
1307	 65.35	0	1497335..1497790	-	151	122879105	-	XOO1457	-	hypothetical protein
1308	 68.69	+1	1498037..1498927	-	296	58581081	-	XOO1458	-	pirin-related protein
1309	 67.51	+1	1499689..1500402	-	237	122879106	nfi	XOO1459	-	endonuclease V
1310	 64.40	0	1500506..1501255	+	249	58581083	gpm	XOO1460	-	phosphoglyceromutase
1311	 69.88	+1	1501517..1501858	+	113	58581084	-	XOO1461	-	hypothetical protein
1312	 62.23	0	1502020..1504248	+	742	58581085	-	XOO1462	-	metallopeptidase
1313	 66.84	0	1506196..1507317	-	373	161899005	cheB	XOO1465	-	chemotaxis-specific methylesterase
1314	 61.35	0	1507332..1508159	-	275	58581089	cheR	XOO1466	-	response regulator for chemotaxis
1315	 66.21	0	1508143..1509444	-	433	58581090	vieA	XOO1467	-	response regulator
1316	 63.57	0	1509453..1509968	-	171	58581091	cheW	XOO1468	-	chemotaxis protein
1317	 63.99	0	1509979..1512147	-	722	58581092	mcp	XOO1469	-	chemotaxis protein
1318	 64.19	0	1512216..1514237	-	673	58581093	cheA	XOO1470	-	chemotaxis histidine protein kinase
1319	 61.21	0	1514256..1514585	-	109	58581094	-	XOO1471	-	hypothetical protein
1320	 65.69	0	1515075..1518539	-	1154	58581095	mfd	XOO1472	-	transcription-repair coupling factor
1321	 66.67	0	1518943..1519485	-	180	58581096	-	XOO1473	-	hypothetical protein
1322	 68.14	+1	1519897..1520985	-	362	58581097	-	XOO1474	-	hypothetical protein
1323	 58.91	-1	1521151..1521627	-	158	58581098	-	XOO1475	-	putative transposase
1324	 58.06	-1	1521593..1521964	-	123	58581099	-	XOO1476	-	putative transposase
1325	 63.84	0	1522250..1522816	+	188	58581100	creC	XOO1477	-	two-component system sensor protein
1326	 66.19	0	1522972..1523601	+	209	58581101	-	XOO1478	-	putative transposase
1327	 58.06	-1	1523636..1524007	+	123	58581102	-	XOO1479	-	putative transposase
1328	 58.18	-1	1524029..1524841	-	270	58581103	-	XOO1480	-	cysteine protease
1329	 64.22	0	1525256..1525828	+	190	58581104	creD	XOO1481	-	inner membrane protein
1330	 48.39	-2	1527038..1527130	-	30	58581108	-	XOO1485	-	putative transposase
1331	 64.56	0	1527183..1528082	-	299	58581109	-	XOO1486	-	putative transposase
1332	 57.93	-1	1528170..1528982	-	270	122879107	-	XOO1487	-	cysteine protease
1333	 56.99	-1	1532429..1532521	+	30	58581117	-	XOO1494	-	IS1479 transposase
1334	 57.84	-1	1533035..1533340	-	101	58581120	-	XOO1497	-	cysteine protease
1335	 62.37	0	1533445..1534002	+	185	58581121	-	XOO1498	-	hypothetical protein
1336	 59.77	-1	1534095..1534355	+	86	58581123	nthA	XOO1500	-	nitrilase
1337	 60.57	0	1534101..1534346	-	81	121632069	-	XOO4761	-	hypothetical protein
1338	 62.33	0	1534330..1535298	-	322	58581124	-	XOO1501	-	transposase
1339	 65.84	0	1535367..1536092	+	241	58581125	nthA	XOO1502	-	nitrilase
1340	 65.60	0	1536114..1536674	+	186	121632070	-	XOO4762	-	hypothetical protein
1341	 65.81	0	1536398..1537213	+	271	58581126	-	XOO1503	-	hypothetical protein
1342	 64.67	0	1537282..1538685	+	467	58581127	gltX	XOO1504	-	glutamyl-tRNA synthetase
1343	 66.10	0	1538672..1539205	+	177	58581128	-	XOO1505	-	FUR family transcriptional regulator
1344	 66.67	0	1540847..1541050	+	67	121632071	-	XOO4763	-	hypothetical protein
1345	 61.97	0	1541140..1542267	-	375	58581131	-	XOO1508	-	IS1478 transposase
1346	 64.61	0	1542612..1543097	-	161	58581132	-	XOO1509	-	hypothetical protein
1347	 56.02	-2	1543325..1543540	+	71	58581133	cspA	XOO1510	-	major cold shock protein
1348	 66.10	0	1543791..1544321	-	176	58581134	pcp	XOO1511	-	peptidoglycan-associated outer membrane lipoprotein
1349	 66.28	0	1544402..1544914	-	170	58581135	-	XOO1512	-	hypothetical protein
1350	 64.86	0	1544903..1545733	+	276	58581136	moeB	XOO1513	-	molybdopterin biosynthesis protein
1351	 68.10	+1	1545795..1546562	-	255	58581137	-	XOO1514	-	hypothetical protein
1352	 63.89	0	1546562..1546777	-	71	58581138	-	XOO1515	-	hypothetical protein
1353	 64.01	0	1546848..1547714	+	288	58581139	-	XOO1516	-	hypothetical protein
1354	 65.90	0	1547860..1549035	+	391	58581140	gcdH	XOO1517	-	glutaryl-CoA dehydrogenase
1355	 66.18	0	1549050..1549256	+	68	58581141	-	XOO1518	-	hypothetical protein
1356	 67.00	0	1549735..1550328	+	197	121632072	-	XOO4764	-	hypothetical protein
1357	 69.52	+1	1550793..1551143	+	116	58581145	-	XOO1522	-	hypothetical protein
1358	 66.19	0	1551278..1551907	+	209	122879108	gst	XOO1521	-	glutathione S-transferase
1359	 67.44	+1	1552073..1554013	+	646	122879109	-	XOO1523	-	asparagine synthase
1360	 63.42	0	1554230..1554784	+	184	58581147	-	XOO1524	-	hypothetical protein
1361	 61.68	0	1554853..1556436	+	527	58581148	dnaB	XOO1525	-	replicative DNA helicase
1362	 64.33	0	1556503..1557957	+	484	58581149	phr	XOO1526	-	photolyase
1363	 63.09	0	1558374..1559099	+	241	58581150	-	XOO1527	-	OmpA family protein
1364	 58.15	-1	1559198..1559608	+	136	58581151	-	XOO1528	-	short chain dehydrogenase
1365	 63.26	0	1559648..1560616	+	322	58581152	-	XOO1529	-	hypothetical protein
1366	 63.32	0	1560860..1563280	-	806	58581153	fhuA	XOO1530	-	TonB-dependent receptor
1367	 71.57	+2	1565447..1565650	-	67	58581155	phuR	XOO1532	-	outer membrane hemin receptor
1368	 65.45	0	1565869..1566279	+	136	58581156	-	XOO1533	-	hypothetical protein
1369	 63.91	0	1566363..1566761	+	132	58581157	-	XOO1534	-	hypothetical protein
1370	 63.69	0	1566894..1567934	-	346	58581158	-	XOO1535	-	alcohol dehydrogenase
1371	 66.53	0	1568007..1569452	-	481	58581159	yadQ	XOO1536	-	chloride channel
1372	 63.03	0	1570728..1570892	+	54	121632073	-	XOO4766	-	hypothetical protein
1373	 67.77	+1	1571142..1571687	-	181	58581161	ogt	XOO1538	-	6-O-methylguanine-DNA methyltransferase
1374	 70.49	+1	1571684..1573147	-	487	58581162	ada	XOO1539	-	DNA methylation and regulatory protein
1375	 67.15	0	1573159..1574202	+	347	58581163	-	XOO1540	-	hypothetical protein
1376	 69.54	+1	1574171..1574518	+	115	58581164	-	XOO1541	-	hypothetical protein
1377	 66.67	0	1574597..1574851	+	84	58581165	-	XOO1542	-	hypothetical protein
1378	 69.10	+1	1575254..1575787	+	177	58581166	-	XOO1543	-	hypothetical protein
1379	 64.43	0	1575813..1576214	+	133	58581167	-	XOO1544	-	inner membrane protein
1380	 63.79	0	1576560..1576802	-	80	58581168	-	XOO1545	-	hypothetical protein
1381	 66.67	0	1576831..1577490	-	219	122879110	-	XOO1546	-	hypothetical protein
1382	 63.35	0	1577520..1578062	-	180	58581171	rfaY	XOO1548	-	RNA polymerase ECF-type sigma factor
1383	 65.87	0	1577798..1577923	-	41	58581172	rfaY	XOO1549	-	RNA polymerase ECF-type sigma factor
1384	 67.03	0	1578167..1580071	+	634	58581173	deaD	XOO1550	-	ATP-dependent RNA helicase
1385	 64.17	0	1580209..1582731	+	840	58581174	-	XOO1551	-	hypothetical protein
1386	 63.07	0	1582881..1583603	+	240	58581175	-	XOO1552	-	pseudouridylate synthase
1387	 65.85	0	1585117..1585728	-	203	58581177	-	XOO1554	-	hypothetical protein
1388	 65.66	0	1585852..1585950	-	32	121632074	-	XOO4768	-	hypothetical protein
1389	 67.86	+1	1586523..1587023	+	166	122879111	menG	XOO1555	-	ribonuclease activity regulator protein RraA
1390	 63.77	0	1586953..1588641	+	562	58581179	-	XOO1556	-	beta-lactamase
1391	 63.27	0	1588788..1590053	+	421	58581180	yjl094C	XOO1557	-	cation:proton antiporter
1392	 66.83	0	1590112..1591305	-	397	58581181	baeS	XOO1558	-	two-component system sensor protein
1393	 65.12	0	1591302..1593635	-	777	58581182	baeR	XOO1559	-	two-component system regulatory protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.