IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1262	 65.19	0	1442934..1443476	-	180	58581034	-	XOO1411	-	hypothetical protein
1263	 65.67	0	1443534..1443734	-	66	58581035	-	XOO1412	-	hypothetical protein
1264	 66.80	0	1443933..1444664	-	243	58581036	-	XOO1413	-	peptidase
1265	 62.21	0	1444680..1445105	-	141	122879099	hup	XOO1414	-	histone-like protein
1266	 62.33	0	1445750..1447132	-	460	122879100	-	XOO1415	-	putative ISXo8 transposase
1267	 66.67	0	1447140..1448036	-	298	58581039	proC	XOO1416	-	pyrroline-5-carboxylate reductase
1268	 65.16	0	1448044..1448574	-	176	58581040	-	XOO1417	-	hypothetical protein
1269	 61.85	0	1449100..1450137	+	345	58581041	pilT	XOO1418	-	twitching motility protein
1270	 60.58	0	1450200..1451381	+	393	58581042	pilU	XOO1419	-	twitching motility protein
1271	 59.26	-1	1452555..1452797	-	80	58581045	-	XOO1422	-	hypothetical protein
1272	 64.17	0	1452951..1453712	-	253	58581046	tag	XOO1423	-	DNA-3-methyladenine glycosylase I
1273	 63.70	0	1453983..1454825	-	280	58581047	-	XOO1424	-	hypothetical protein
1274	 63.49	0	1454793..1455359	+	188	58581048	algH	XOO1425	-	hypothetical protein
1275	 69.64	+1	1455316..1455819	+	167	58581049	-	XOO1426	-	Holliday junction resolvase-like protein
1276	 66.77	0	1455833..1456780	+	315	58581050	pyrB	XOO1427	-	aspartate carbamoyltransferase catalytic subunit
1277	 61.84	0	1457227..1457661	+	144	58581051	osmC	XOO1428	-	osmotically inducible protein
1278	 62.03	0	1457745..1458413	+	222	58581052	-	XOO1429	-	hypothetical protein
1279	 66.45	0	1458699..1459607	-	302	58581053	-	XOO1430	-	hypothetical protein
1280	 65.93	0	1459612..1459881	-	89	58581054	-	XOO1431	-	hypothetical protein
1281	 68.33	+1	1459809..1460588	-	259	58581055	-	XOO1432	-	hypothetical protein
1282	 65.48	0	1460678..1463287	+	869	58581056	lysA	XOO1433	-	bifunctional aspartate kinase/diaminopimelate decarboxylase protein
1283	 64.49	0	1463271..1463729	+	152	58581057	-	XOO1434	-	hypothetical protein
1284	 64.09	0	1463726..1465081	+	451	58581058	-	XOO1435	-	hypothetical protein
1285	 66.45	0	1465062..1466468	+	468	58581059	murD	XOO1436	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1286	 66.04	0	1466785..1467579	+	264	58581060	-	XOO1437	-	hypothetical protein
1287	 66.67	0	1467764..1468762	-	332	122879101	ispB	XOO1438	-	octaprenyl-diphosphate synthase
1288	 65.74	0	1469038..1469574	+	178	58581062	ssb	XOO1439	-	single-strand DNA-binding protein
1289	 64.24	0	1469857..1471341	-	494	122879102	-	XOO1440	-	response regulator
1290	 63.91	0	1472270..1472632	+	120	58581065	-	XOO1442	-	alcohol dehydrogenase
1291	 62.93	0	1472598..1473773	+	391	58581066	-	XOO1443	-	putative ISXo8 transposase
1292	 62.96	0	1473819..1474817	+	332	58581067	-	XOO1444	-	transposase
1293	 63.86	0	1475197..1475874	+	225	122879103	-	XOO1445	-	hydrolase
1294	 61.33	0	1476412..1476636	-	74	58581069	-	XOO1446	-	hypothetical protein
1295	 65.06	0	1476636..1478816	-	726	58581070	cstA	XOO1447	-	carbon starvation protein A
1296	 64.71	0	1478775..1479797	+	340	58581071	-	XOO1448	-	pirin
1297	 67.38	+1	1479968..1480246	+	92	58581072	-	XOO1449	-	hypothetical protein
1298	 72.70	+2	1480248..1483232	+	994	58581073	-	XOO1450	-	hypothetical protein
1299	 56.86	-1	1483229..1484176	+	315	58581074	-	XOO1451	-	hypothetical protein
1300	 62.91	0	1486540..1488828	+	762	58581075	-	XOO1452	-	hypothetical protein
1301	 72.98	+2	1488850..1490751	+	633	58581076	-	XOO1453	-	VGR-related protein
1302	 59.40	-1	1492778..1493011	+	77	58581077	-	XOO1454	-	hypothetical protein
1303	 60.78	0	1493008..1493160	+	50	121632067	-	XOO4758	-	hypothetical protein
1304	 61.44	0	1493646..1493798	+	50	121632068	-	XOO4759	-	hypothetical protein
1305	 59.73	-1	1493779..1494585	+	268	122879104	-	XOO1455	-	hypothetical protein
1306	 65.26	0	1494582..1496990	+	802	58581079	-	XOO1456	-	hypothetical protein
1307	 65.35	0	1497335..1497790	-	151	122879105	-	XOO1457	-	hypothetical protein
1308	 68.69	+1	1498037..1498927	-	296	58581081	-	XOO1458	-	pirin-related protein
1309	 67.51	+1	1499689..1500402	-	237	122879106	nfi	XOO1459	-	endonuclease V
1310	 64.40	0	1500506..1501255	+	249	58581083	gpm	XOO1460	-	phosphoglyceromutase
1311	 69.88	+1	1501517..1501858	+	113	58581084	-	XOO1461	-	hypothetical protein
1312	 62.23	0	1502020..1504248	+	742	58581085	-	XOO1462	-	metallopeptidase
1313	 66.84	0	1506196..1507317	-	373	161899005	cheB	XOO1465	-	chemotaxis-specific methylesterase
1314	 61.35	0	1507332..1508159	-	275	58581089	cheR	XOO1466	-	response regulator for chemotaxis
1315	 66.21	0	1508143..1509444	-	433	58581090	vieA	XOO1467	-	response regulator
1316	 63.57	0	1509453..1509968	-	171	58581091	cheW	XOO1468	-	chemotaxis protein
1317	 63.99	0	1509979..1512147	-	722	58581092	mcp	XOO1469	-	chemotaxis protein
1318	 64.19	0	1512216..1514237	-	673	58581093	cheA	XOO1470	-	chemotaxis histidine protein kinase
1319	 61.21	0	1514256..1514585	-	109	58581094	-	XOO1471	-	hypothetical protein
1320	 65.69	0	1515075..1518539	-	1154	58581095	mfd	XOO1472	-	transcription-repair coupling factor
1321	 66.67	0	1518943..1519485	-	180	58581096	-	XOO1473	-	hypothetical protein
1322	 68.14	+1	1519897..1520985	-	362	58581097	-	XOO1474	-	hypothetical protein
1323	 58.91	-1	1521151..1521627	-	158	58581098	-	XOO1475	-	putative transposase
1324	 58.06	-1	1521593..1521964	-	123	58581099	-	XOO1476	-	putative transposase
1325	 63.84	0	1522250..1522816	+	188	58581100	creC	XOO1477	-	two-component system sensor protein
1326	 66.19	0	1522972..1523601	+	209	58581101	-	XOO1478	-	putative transposase
1327	 58.06	-1	1523636..1524007	+	123	58581102	-	XOO1479	-	putative transposase
1328	 58.18	-1	1524029..1524841	-	270	58581103	-	XOO1480	-	cysteine protease
1329	 64.22	0	1525256..1525828	+	190	58581104	creD	XOO1481	-	inner membrane protein
1330	 48.39	-2	1527038..1527130	-	30	58581108	-	XOO1485	-	putative transposase
1331	 64.56	0	1527183..1528082	-	299	58581109	-	XOO1486	-	putative transposase
1332	 57.93	-1	1528170..1528982	-	270	122879107	-	XOO1487	-	cysteine protease
1333	 56.99	-1	1532429..1532521	+	30	58581117	-	XOO1494	-	IS1479 transposase
1334	 57.84	-1	1533035..1533340	-	101	58581120	-	XOO1497	-	cysteine protease
1335	 62.37	0	1533445..1534002	+	185	58581121	-	XOO1498	-	hypothetical protein
1336	 59.77	-1	1534095..1534355	+	86	58581123	nthA	XOO1500	-	nitrilase
1337	 60.57	0	1534101..1534346	-	81	121632069	-	XOO4761	-	hypothetical protein
1338	 62.33	0	1534330..1535298	-	322	58581124	-	XOO1501	-	transposase
1339	 65.84	0	1535367..1536092	+	241	58581125	nthA	XOO1502	-	nitrilase
1340	 65.60	0	1536114..1536674	+	186	121632070	-	XOO4762	-	hypothetical protein
1341	 65.81	0	1536398..1537213	+	271	58581126	-	XOO1503	-	hypothetical protein
1342	 64.67	0	1537282..1538685	+	467	58581127	gltX	XOO1504	-	glutamyl-tRNA synthetase
1343	 66.10	0	1538672..1539205	+	177	58581128	-	XOO1505	-	FUR family transcriptional regulator
1344	 66.67	0	1540847..1541050	+	67	121632071	-	XOO4763	-	hypothetical protein
1345	 61.97	0	1541140..1542267	-	375	58581131	-	XOO1508	-	IS1478 transposase
1346	 64.61	0	1542612..1543097	-	161	58581132	-	XOO1509	-	hypothetical protein
1347	 56.02	-2	1543325..1543540	+	71	58581133	cspA	XOO1510	-	major cold shock protein
1348	 66.10	0	1543791..1544321	-	176	58581134	pcp	XOO1511	-	peptidoglycan-associated outer membrane lipoprotein
1349	 66.28	0	1544402..1544914	-	170	58581135	-	XOO1512	-	hypothetical protein
1350	 64.86	0	1544903..1545733	+	276	58581136	moeB	XOO1513	-	molybdopterin biosynthesis protein
1351	 68.10	+1	1545795..1546562	-	255	58581137	-	XOO1514	-	hypothetical protein
1352	 63.89	0	1546562..1546777	-	71	58581138	-	XOO1515	-	hypothetical protein
1353	 64.01	0	1546848..1547714	+	288	58581139	-	XOO1516	-	hypothetical protein
1354	 65.90	0	1547860..1549035	+	391	58581140	gcdH	XOO1517	-	glutaryl-CoA dehydrogenase
1355	 66.18	0	1549050..1549256	+	68	58581141	-	XOO1518	-	hypothetical protein
1356	 67.00	0	1549735..1550328	+	197	121632072	-	XOO4764	-	hypothetical protein
1357	 69.52	+1	1550793..1551143	+	116	58581145	-	XOO1522	-	hypothetical protein
1358	 66.19	0	1551278..1551907	+	209	122879108	gst	XOO1521	-	glutathione S-transferase
1359	 67.44	+1	1552073..1554013	+	646	122879109	-	XOO1523	-	asparagine synthase
1360	 63.42	0	1554230..1554784	+	184	58581147	-	XOO1524	-	hypothetical protein
1361	 61.68	0	1554853..1556436	+	527	58581148	dnaB	XOO1525	-	replicative DNA helicase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.