IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1260	 60.30	-1	1441835..1442164	+	109	58581032	pfpI	XOO1409	-	protease
1261	 62.31	0	1442282..1442878	-	198	58581033	-	XOO1410	-	hypothetical protein
1262	 65.19	0	1442934..1443476	-	180	58581034	-	XOO1411	-	hypothetical protein
1263	 65.67	0	1443534..1443734	-	66	58581035	-	XOO1412	-	hypothetical protein
1264	 66.80	0	1443933..1444664	-	243	58581036	-	XOO1413	-	peptidase
1265	 62.21	0	1444680..1445105	-	141	122879099	hup	XOO1414	-	histone-like protein
1266	 62.33	0	1445750..1447132	-	460	122879100	-	XOO1415	-	putative ISXo8 transposase
1267	 66.67	0	1447140..1448036	-	298	58581039	proC	XOO1416	-	pyrroline-5-carboxylate reductase
1268	 65.16	0	1448044..1448574	-	176	58581040	-	XOO1417	-	hypothetical protein
1269	 61.85	0	1449100..1450137	+	345	58581041	pilT	XOO1418	-	twitching motility protein
1270	 60.58	0	1450200..1451381	+	393	58581042	pilU	XOO1419	-	twitching motility protein
1271	 59.26	-1	1452555..1452797	-	80	58581045	-	XOO1422	-	hypothetical protein
1272	 64.17	0	1452951..1453712	-	253	58581046	tag	XOO1423	-	DNA-3-methyladenine glycosylase I
1273	 63.70	0	1453983..1454825	-	280	58581047	-	XOO1424	-	hypothetical protein
1274	 63.49	0	1454793..1455359	+	188	58581048	algH	XOO1425	-	hypothetical protein
1275	 69.64	+1	1455316..1455819	+	167	58581049	-	XOO1426	-	Holliday junction resolvase-like protein
1276	 66.77	0	1455833..1456780	+	315	58581050	pyrB	XOO1427	-	aspartate carbamoyltransferase catalytic subunit
1277	 61.84	0	1457227..1457661	+	144	58581051	osmC	XOO1428	-	osmotically inducible protein
1278	 62.03	0	1457745..1458413	+	222	58581052	-	XOO1429	-	hypothetical protein
1279	 66.45	0	1458699..1459607	-	302	58581053	-	XOO1430	-	hypothetical protein
1280	 65.93	0	1459612..1459881	-	89	58581054	-	XOO1431	-	hypothetical protein
1281	 68.33	+1	1459809..1460588	-	259	58581055	-	XOO1432	-	hypothetical protein
1282	 65.48	0	1460678..1463287	+	869	58581056	lysA	XOO1433	-	bifunctional aspartate kinase/diaminopimelate decarboxylase protein
1283	 64.49	0	1463271..1463729	+	152	58581057	-	XOO1434	-	hypothetical protein
1284	 64.09	0	1463726..1465081	+	451	58581058	-	XOO1435	-	hypothetical protein
1285	 66.45	0	1465062..1466468	+	468	58581059	murD	XOO1436	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1286	 66.04	0	1466785..1467579	+	264	58581060	-	XOO1437	-	hypothetical protein
1287	 66.67	0	1467764..1468762	-	332	122879101	ispB	XOO1438	-	octaprenyl-diphosphate synthase
1288	 65.74	0	1469038..1469574	+	178	58581062	ssb	XOO1439	-	single-strand DNA-binding protein
1289	 64.24	0	1469857..1471341	-	494	122879102	-	XOO1440	-	response regulator
1290	 63.91	0	1472270..1472632	+	120	58581065	-	XOO1442	-	alcohol dehydrogenase
1291	 62.93	0	1472598..1473773	+	391	58581066	-	XOO1443	-	putative ISXo8 transposase
1292	 62.96	0	1473819..1474817	+	332	58581067	-	XOO1444	-	transposase
1293	 63.86	0	1475197..1475874	+	225	122879103	-	XOO1445	-	hydrolase
1294	 61.33	0	1476412..1476636	-	74	58581069	-	XOO1446	-	hypothetical protein
1295	 65.06	0	1476636..1478816	-	726	58581070	cstA	XOO1447	-	carbon starvation protein A
1296	 64.71	0	1478775..1479797	+	340	58581071	-	XOO1448	-	pirin
1297	 67.38	+1	1479968..1480246	+	92	58581072	-	XOO1449	-	hypothetical protein
1298	 72.70	+2	1480248..1483232	+	994	58581073	-	XOO1450	-	hypothetical protein
1299	 56.86	-1	1483229..1484176	+	315	58581074	-	XOO1451	-	hypothetical protein
1300	 62.91	0	1486540..1488828	+	762	58581075	-	XOO1452	-	hypothetical protein
1301	 72.98	+2	1488850..1490751	+	633	58581076	-	XOO1453	-	VGR-related protein
1302	 59.40	-1	1492778..1493011	+	77	58581077	-	XOO1454	-	hypothetical protein
1303	 60.78	0	1493008..1493160	+	50	121632067	-	XOO4758	-	hypothetical protein
1304	 61.44	0	1493646..1493798	+	50	121632068	-	XOO4759	-	hypothetical protein
1305	 59.73	-1	1493779..1494585	+	268	122879104	-	XOO1455	-	hypothetical protein
1306	 65.26	0	1494582..1496990	+	802	58581079	-	XOO1456	-	hypothetical protein
1307	 65.35	0	1497335..1497790	-	151	122879105	-	XOO1457	-	hypothetical protein
1308	 68.69	+1	1498037..1498927	-	296	58581081	-	XOO1458	-	pirin-related protein
1309	 67.51	+1	1499689..1500402	-	237	122879106	nfi	XOO1459	-	endonuclease V
1310	 64.40	0	1500506..1501255	+	249	58581083	gpm	XOO1460	-	phosphoglyceromutase
1311	 69.88	+1	1501517..1501858	+	113	58581084	-	XOO1461	-	hypothetical protein
1312	 62.23	0	1502020..1504248	+	742	58581085	-	XOO1462	-	metallopeptidase
1313	 66.84	0	1506196..1507317	-	373	161899005	cheB	XOO1465	-	chemotaxis-specific methylesterase
1314	 61.35	0	1507332..1508159	-	275	58581089	cheR	XOO1466	-	response regulator for chemotaxis
1315	 66.21	0	1508143..1509444	-	433	58581090	vieA	XOO1467	-	response regulator
1316	 63.57	0	1509453..1509968	-	171	58581091	cheW	XOO1468	-	chemotaxis protein
1317	 63.99	0	1509979..1512147	-	722	58581092	mcp	XOO1469	-	chemotaxis protein
1318	 64.19	0	1512216..1514237	-	673	58581093	cheA	XOO1470	-	chemotaxis histidine protein kinase
1319	 61.21	0	1514256..1514585	-	109	58581094	-	XOO1471	-	hypothetical protein
1320	 65.69	0	1515075..1518539	-	1154	58581095	mfd	XOO1472	-	transcription-repair coupling factor
1321	 66.67	0	1518943..1519485	-	180	58581096	-	XOO1473	-	hypothetical protein
1322	 68.14	+1	1519897..1520985	-	362	58581097	-	XOO1474	-	hypothetical protein
1323	 58.91	-1	1521151..1521627	-	158	58581098	-	XOO1475	-	putative transposase
1324	 58.06	-1	1521593..1521964	-	123	58581099	-	XOO1476	-	putative transposase
1325	 63.84	0	1522250..1522816	+	188	58581100	creC	XOO1477	-	two-component system sensor protein
1326	 66.19	0	1522972..1523601	+	209	58581101	-	XOO1478	-	putative transposase
1327	 58.06	-1	1523636..1524007	+	123	58581102	-	XOO1479	-	putative transposase
1328	 58.18	-1	1524029..1524841	-	270	58581103	-	XOO1480	-	cysteine protease
1329	 64.22	0	1525256..1525828	+	190	58581104	creD	XOO1481	-	inner membrane protein
1330	 48.39	-2	1527038..1527130	-	30	58581108	-	XOO1485	-	putative transposase
1331	 64.56	0	1527183..1528082	-	299	58581109	-	XOO1486	-	putative transposase
1332	 57.93	-1	1528170..1528982	-	270	122879107	-	XOO1487	-	cysteine protease
1333	 56.99	-1	1532429..1532521	+	30	58581117	-	XOO1494	-	IS1479 transposase
1334	 57.84	-1	1533035..1533340	-	101	58581120	-	XOO1497	-	cysteine protease
1335	 62.37	0	1533445..1534002	+	185	58581121	-	XOO1498	-	hypothetical protein
1336	 59.77	-1	1534095..1534355	+	86	58581123	nthA	XOO1500	-	nitrilase
1337	 60.57	0	1534101..1534346	-	81	121632069	-	XOO4761	-	hypothetical protein
1338	 62.33	0	1534330..1535298	-	322	58581124	-	XOO1501	-	transposase
1339	 65.84	0	1535367..1536092	+	241	58581125	nthA	XOO1502	-	nitrilase
1340	 65.60	0	1536114..1536674	+	186	121632070	-	XOO4762	-	hypothetical protein
1341	 65.81	0	1536398..1537213	+	271	58581126	-	XOO1503	-	hypothetical protein
1342	 64.67	0	1537282..1538685	+	467	58581127	gltX	XOO1504	-	glutamyl-tRNA synthetase
1343	 66.10	0	1538672..1539205	+	177