IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.51   STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
935	 65.32	0	1064771..1065289	-	172	154244893	-	Xaut_0943	-	hypothetical protein
936	 67.26	0	1065240..1065917	-	225	154244894	-	Xaut_0944	-	hypothetical protein
937	 68.03	0	1066009..1066374	-	121	154244895	-	Xaut_0945	-	hypothetical protein
938	 68.53	0	1066568..1068013	+	481	154244896	-	Xaut_0946	-	phospholipase D/transphosphatidylase
939	 68.16	0	1068087..1068623	+	178	154244897	-	Xaut_0947	-	HPP family protein
940	 71.33	0	1068796..1069653	-	285	154244898	-	Xaut_0948	-	LysR family transcriptional regulator
941	 65.33	0	1069751..1070125	+	124	154244899	-	Xaut_0949	-	4-oxalocrotonate tautomerase
942	 69.83	0	1070198..1070671	-	157	154244900	-	Xaut_0950	-	cupin 2 domain-containing protein
943	 70.92	0	1070789..1071658	+	289	154244901	-	Xaut_0951	-	LysR family transcriptional regulator
944	 67.96	0	1071707..1072246	-	179	154244902	-	Xaut_0952	-	ECF subfamily RNA polymerase sigma-24 factor
945	 71.37	0	1072416..1073096	-	226	154244903	-	Xaut_0953	-	hypothetical protein
946	 69.37	0	1073249..1073803	-	184	154244904	-	Xaut_0954	-	hypothetical protein
947	 69.14	0	1074017..1074946	+	309	154244905	-	Xaut_0955	-	alpha/beta hydrolase fold
948	 67.06	0	1075036..1076049	+	337	154244906	-	Xaut_0956	-	alpha/beta hydrolase fold
949	 69.00	0	1076119..1076760	-	213	154244907	-	Xaut_0957	-	hypothetical protein
950	 66.85	0	1076757..1077314	-	185	154244908	-	Xaut_0958	-	RNA polymerase sigma factor
951	 67.03	0	1077579..1077857	+	92	154244909	-	Xaut_0959	-	hypothetical protein
952	 71.14	0	1077997..1080006	-	669	154244910	-	Xaut_0960	-	hypothetical protein
953	 63.13	-1	1080044..1080835	-	263	154244911	-	Xaut_0961	-	oxidoreductase molybdopterin binding
954	 62.78	-1	1080848..1081516	-	222	154244912	-	Xaut_0962	-	hypothetical protein
955	 72.04	+1	1081636..1082100	+	154	154244913	-	Xaut_0963	-	PRC-barrel domain-containing protein
956	 68.81	0	1082127..1083386	-	419	154244914	-	Xaut_0964	-	methylthioribose kinase
957	 71.10	0	1083403..1084281	-	292	154244915	-	Xaut_0965	-	purine phosphorylase family 1
958	 72.29	+1	1084290..1085018	-	242	154244916	-	Xaut_0966	-	glycosyl transferase family protein
959	 65.07	0	1085018..1086085	-	355	154244917	-	Xaut_0967	-	radical SAM domain-containing protein
960	 71.25	0	1086117..1086989	-	290	154244918	-	Xaut_0968	-	hypothetical protein
961	 67.85	0	1087113..1087790	-	225	154244919	-	Xaut_0969	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
962	 70.29	0	1087813..1088364	-	183	154244920	-	Xaut_0970	-	alkylhydroperoxidase
963	 70.97	0	1088541..1089470	+	309	154244921	-	Xaut_0971	-	LysR family transcriptional regulator
964	 70.44	0	1089482..1090381	-	299	154244922	-	Xaut_0972	-	LysR family transcriptional regulator
965	 67.62	0	1090477..1091103	+	208	154244923	-	Xaut_0973	-	NAD(P)H dehydrogenase (quinone)
966	 66.98	0	1091257..1092213	+	318	154244924	-	Xaut_0974	-	metallophosphoesterase
967	 64.74	0	1092271..1092633	+	120	154244925	-	Xaut_0975	-	blue (type1) copper domain-containing protein
968	 71.76	+1	1092868..1093476	+	202	154244926	-	Xaut_0976	-	ECF subfamily RNA polymerase sigma-24 factor
969	 69.41	0	1093473..1094309	+	278	154244927	-	Xaut_0977	-	putative transmembrane anti-sigma factor
970	 65.73	0	1094313..1095056	-	247	154244928	-	Xaut_0978	-	haloacid dehalogenase, type II
971	 68.36	0	1095118..1095708	-	196	154244929	-	Xaut_0979	-	TetR family transcriptional regulator
972	 63.03	-1	1095787..1096500	-	237	154244930	-	Xaut_0980	-	glutathione S-transferase domain-containing protein
973	 68.64	0	1096669..1097379	+	236	154244931	-	Xaut_0981	-	glutathione S-transferase domain-containing protein
974	 68.40	0	1097417..1098223	+	268	154244932	-	Xaut_0982	-	short-chain dehydrogenase/reductase SDR
975	 69.48	0	1098401..1099288	-	295	154244933	-	Xaut_0983	-	helix-turn-helix domain-containing protein
976	 68.90	0	1099575..1100738	+	387	154244934	-	Xaut_0984	-	NADH:flavin oxidoreductase/NADH oxidase
977	 68.04	0	1100779..1101069	+	96	154244935	-	Xaut_0985	-	hypothetical protein
978	 68.15	0	1101074..1102687	+	537	154244936	-	Xaut_0986	-	SSS family solute/sodium (Na+) symporter
979	 67.47	0	1103024..1105138	+	704	154244937	-	Xaut_0987	-	hypothetical protein
980	 67.90	0	1105151..1106041	+	296	154244938	-	Xaut_0988	-	OmpA/MotB domain-containing protein
981	 70.64	0	1106055..1107464	+	469	154244939	-	Xaut_0989	-	hypothetical protein
982	 69.30	0	1107568..1108515	-	315	154244940	-	Xaut_0990	-	aldo/keto reductase
983	 66.67	0	1108922..1109554	+	210	154244941	-	Xaut_0991	-	two component LuxR family transcriptional regulator
984	 67.37	0	1109547..1111535	-	662	154244942	-	Xaut_0992	-	integral membrane sensor hybrid histidine kinase
985	 64.75	0	1111668..1111928	+	86	154244943	-	Xaut_0993	-	hypothetical protein
986	 72.01	+1	1111941..1112258	-	105	154244944	-	Xaut_0994	-	hypothetical protein
987	 69.11	0	1112604..1114364	-	586	154244945	-	Xaut_0995	-	protein kinase
988	 70.70	0	1114372..1115289	-	305	154244946	-	Xaut_0996	-	protein phosphatase 2C-like protein
989	 67.27	0	1115303..1117114	-	603	154244947	-	Xaut_0997	-	FHA domain-containing protein
990	 64.78	0	1117513..1117884	-	123	154244948	-	Xaut_0998	-	anti-sigma-factor antagonist
991	 66.57	0	1118131..1119135	+	334	154244949	-	Xaut_0999	-	patatin
992	 71.24	0	1119130..1120725	-	531	154244950	-	Xaut_1000	-	major facilitator transporter
993	 71.05	0	1120722..1121543	-	273	154244951	-	Xaut_1001	-	hypothetical protein
994	 67.33	0	1121567..1122922	+	451	154244952	-	Xaut_1002	-	glycosyltransferase family 28 protein
995	 69.13	0	1122940..1124682	-	580	154244953	-	Xaut_1003	-	hypothetical protein
996	 68.88	0	1124682..1126217	-	511	154244954	-	Xaut_1004	-	histidine ammonia-lyase
997	 65.59	0	1126461..1127297	+	278	154244955	-	Xaut_1005	-	oleoyl-(acyl-carrier-protein) hydrolase
998	 70.25	0	1127556..1129313	+	585	154244956	-	Xaut_1006	-	AMP-dependent synthetase and ligase
999	 72.54	+1	1129234..1135158	+	1974	154244957	-	Xaut_1007	-	Beta-ketoacyl synthase
1000	 72.74	+1	1135169..1140667	+	1832	154244958	-	Xaut_1008	-	Beta-ketoacyl synthase
1001	 71.14	0	1140671..1148791	+	2706	154244959	-	Xaut_1009	-	amino acid adenylation domain-containing protein
1002	 71.29	0	1148788..1156602	+	2604	154244960	-	Xaut_1010	-	KR domain-containing protein
1003	 72.75	+1	1156613..1162543	+	1976	154244961	-	Xaut_1011	-	AMP-dependent synthetase and ligase
1004	 69.30	0	1162540..1163526	+	328	154244962	-	Xaut_1012	-	patatin
1005	 70.24	0	1163626..1164549	+	307	154244963	-	Xaut_1013	-	alpha/beta hydrolase fold
1006	 72.43	+1	1164582..1165379	+	265	154244964	-	Xaut_1014	-	4'-phosphopantetheinyl transferase
1007	 69.02	0	1165351..1166286	-	311	154244965	-	Xaut_1015	-	LysR family transcriptional regulator
1008	 69.10	0	1166369..1167109	+	246	154244966	-	Xaut_1016	-	short-chain dehydrogenase/reductase SDR
1009	 68.29	0	1167329..1168804	+	491	154244967	-	Xaut_1017	-	glucose-6-phosphate 1-dehydrogenase
1010	 70.59	0	1168975..1170834	+	619	154244968	-	Xaut_1018	-	phosphogluconate dehydratase
1011	 74.45	+1	1170831..1171472	+	213	154244969	-	Xaut_1019	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
1012	 70.60	0	1171527..1172594	-	355	154244970	-	Xaut_1020	-	aldose 1-epimerase
1013	 69.35	0	1172822..1173754	-	310	154244971	-	Xaut_1021	-	dihydrodipicolinate synthetase
1014	 69.11	0	1173764..1175566	-	600	154244972	-	Xaut_1022	-	dihydroxy-acid dehydratase
1015	 67.00	0	1175879..1176478	-	199	154244973	-	Xaut_1023	-	flavoprotein WrbA
1016	 68.67	0	1176527..1177225	-	232	154244974	-	Xaut_1024	-	pirin domain-containing protein
1017	 71.90	+1	1177546..1178826	-	426	154244975	-	Xaut_1025	-	type III effector Hrp-dependent outers
1018	 68.03	0	1178823..1179626	-	267	154244976	-	Xaut_1026	-	hydroxypyruvate isomerase
1019	 70.49	0	1179742..1180734	-	330	154244977	-	Xaut_1027	-	3-hydroxyisobutyrate dehydrogenase
1020	 63.70	0	1180775..1182088	-	437	154244978	-	Xaut_1028	-	major facilitator transporter
1021	 69.57	0	1182355..1183422	+	355	154244979	-	Xaut_1029	-	periplasmic binding protein/LacI transcriptional regulator
1022	 68.27	0	1183529..1184215	+	228	154244980	-	Xaut_1030	-	putative aldolase
1023	 70.07	0	1184212..1185033	-	273	154244981	-	Xaut_1031	-	MltA-interacting MipA family protein
1024	 68.69	0	1185026..1186411	-	461	154244982	-	Xaut_1032	-	two component, sigma54 specific, Fis family transcriptional regulator
1025	 69.82	0	1186420..1188165	-	581	154244983	-	Xaut_1033	-	integral membrane sensor signal transduction histidine kinase
1026	 70.81	0	1188172..1188678	-	168	154244984	-	Xaut_1034	-	hypothetical protein
1027	 69.03	0	1188666..1189088	-	140	154244985	-	Xaut_1035	-	hypothetical protein
1028	 72.14	+1	1189085..1190308	-	407	154244986	-	Xaut_1036	-	hypothetical protein
1029	 71.57	+1	1190298..1191194	-	298	154244987	-	Xaut_1037	-	alpha/beta hydrolase fold
1030	 69.92	0	1191203..1191571	-	122	154244988	-	Xaut_1038	-	hypothetical protein
1031	 69.37	0	1191568..1192491	-	307	154244989	-	Xaut_1039	-	hypothetical protein
1032	 65.32	0	1192497..1193906	-	469	154244990	-	Xaut_1040	-	aminotransferase class-III
1033	 69.57	0	1193899..1194588	-	229	154244991	-	Xaut_1041	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
1034	 63.55	0	1194832..1195377	+	181	154244992	-	Xaut_1042	-	hypothetical protein
67.51	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.