IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.51   STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
880	 68.39	0	991446..992201	-	251	154244838	-	Xaut_0888	-	glutamine amidotransferase class-I
881	 70.23	0	992496..993197	-	233	154244839	-	Xaut_0889	-	ABC transporter related
882	 69.58	0	993184..993972	-	262	154244840	-	Xaut_0890	-	ABC transporter related
883	 69.99	0	993969..994931	-	320	154244841	-	Xaut_0891	-	inner-membrane translocator
884	 68.04	0	994931..995803	-	290	154244842	-	Xaut_0892	-	inner-membrane translocator
885	 68.09	0	995886..997076	-	396	154244843	-	Xaut_0893	-	extracellular ligand-binding receptor
886	 69.86	0	997290..998072	+	260	154244844	-	Xaut_0894	-	TetR family transcriptional regulator
887	 70.37	0	998122..999039	+	305	154244845	-	Xaut_0895	-	PaaX family transcriptional regulator
888	 67.17	0	999162..1000157	+	331	154244846	-	Xaut_0896	-	phenylacetate-CoA oxygenase subunit PaaA
889	 67.71	0	1000186..1000473	+	95	154244847	-	Xaut_0897	-	phenylacetate-CoA oxygenase subunit PaaB
890	 67.95	0	1000543..1001319	+	258	154244848	-	Xaut_0898	-	phenylacetate-CoA oxygenase, PaaI subunit
891	 69.23	0	1001316..1001822	+	168	154244849	-	Xaut_0899	-	phenylacetate-CoA oxygenase, PaaJ subunit
892	 68.72	0	1001813..1002982	+	389	154244850	-	Xaut_0900	-	phenylacetate-CoA oxygenase/reductase, PaaK subunit
893	 67.79	0	1003322..1004659	-	445	154244851	-	Xaut_0901	-	phenylacetate-CoA ligase
894	 69.48	0	1004672..1005169	-	165	154244852	-	Xaut_0902	-	phenylacetic acid degradation protein PaaD
895	 72.08	+1	1005166..1005996	-	276	154244853	-	Xaut_0903	-	enoyl-CoA hydratase
896	 70.16	0	1006201..1007862	+	553	154244854	-	Xaut_0904	-	phenylacetic acid degradation protein paaN
897	 71.05	0	1007886..1009094	+	402	154244855	-	Xaut_0905	-	beta-ketoadipyl CoA thiolase
898	 72.20	+1	1009098..1011212	+	704	154244856	-	Xaut_0906	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
899	 69.77	0	1011209..1013272	+	687	154244857	-	Xaut_0907	-	bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase
900	 66.67	0	1019609..1020385	-	258	154244858	-	Xaut_0908	-	enoyl-CoA hydratase/isomerase
901	 67.01	0	1020975..1022141	+	388	154244859	-	Xaut_0909	-	acyl-CoA dehydrogenase domain-containing protein
902	 63.51	-1	1022107..1022676	-	189	154244860	-	Xaut_0910	-	MarR family transcriptional regulator
903	 65.89	0	1022889..1023659	+	256	154244861	-	Xaut_0911	-	short-chain dehydrogenase/reductase SDR
904	 66.03	0	1023670..1024452	+	260	154244862	-	Xaut_0912	-	naphthoate synthase
905	 65.13	0	1024789..1025961	+	390	154244863	-	Xaut_0913	-	acyl-CoA dehydrogenase domain-containing protein
906	 65.70	0	1025985..1027643	+	552	154244864	-	Xaut_0914	-	cyclohexanecarboxylate-CoA ligase
907	 70.11	0	1027725..1029785	+	686	154244865	-	Xaut_0915	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
908	 71.90	+1	1029782..1030984	+	400	154244866	-	Xaut_0916	-	beta-ketoadipyl CoA thiolase
909	 66.89	0	1031611..1033815	+	734	154244867	-	Xaut_0917	-	NADH:flavin oxidoreductase/NADH oxidase
910	 67.59	0	1033985..1036147	+	720	154244868	-	Xaut_0918	-	hypothetical protein
911	 74.16	+1	1036151..1037551	+	466	154244869	-	Xaut_0919	-	leucine-rich repeat-containing protein
912	 67.92	0	1037560..1038354	+	264	154244870	-	Xaut_0920	-	electron transfer flavoprotein alpha/beta-subunit
913	 70.16	0	1038354..1039325	+	323	154244871	-	Xaut_0921	-	electron transfer flavoprotein alpha subunit
914	 66.61	0	1039476..1041191	+	571	154244872	-	Xaut_0922	-	amino acid permease-associated region
915	 69.21	0	1041213..1042352	+	379	154244873	-	Xaut_0923	-	glycine cleavage T protein (aminomethyl transferase)
916	 66.67	0	1042627..1043706	+	359	154244874	-	Xaut_0924	-	response regulator receiver protein
917	 61.76	-1	1043874..1044260	+	128	154244875	-	Xaut_0925	-	hypothetical protein
918	 67.53	0	1044414..1045226	-	270	154244876	-	Xaut_0926	-	DNA-binding transcriptional activator MhpR
919	 66.43	0	1045374..1046219	-	281	154244877	-	Xaut_0927	-	5-carboxymethyl-2-hydroxymuconate Delta-isomerase
920	 70.78	0	1046296..1047825	-	509	154244878	-	Xaut_0928	-	3-(3-hydroxyphenyl)propionate hydroxylase
921	 66.77	0	1048059..1049027	-	322	154244879	-	Xaut_0929	-	glyoxalase/bleomycin resistance protein/dioxygenase
922	 65.92	0	1049131..1050477	-	448	154244880	-	Xaut_0930	-	major facilitator transporter
923	 65.17	0	1051117..1051917	-	266	154244881	-	Xaut_0931	-	DNA-binding transcriptional activator MhpR
924	 66.03	0	1052252..1053193	+	313	154244882	-	Xaut_0932	-	3-(2,3-dihydroxyphenyl)propionate dioxygenase
925	 65.75	0	1053238..1054431	+	397	154244883	-	Xaut_0933	-	acyl-CoA dehydrogenase type 2
926	 67.74	0	1054449..1055009	+	186	154244884	-	Xaut_0934	-	flavin reductase domain-containing protein
927	 64.01	0	1055011..1055877	+	288	154244885	-	Xaut_0935	-	alpha/beta hydrolase fold
928	 69.76	0	1055884..1056690	+	268	154244886	-	Xaut_0936	-	4-oxalocrotonate decarboxylase
929	 66.67	0	1056687..1057634	+	315	154244887	-	Xaut_0937	-	acetaldehyde dehydrogenase
930	 68.12	0	1057634..1058668	+	344	154244888	-	Xaut_0938	-	pyruvate carboxyltransferase
931	 68.34	0	1058763..1060016	+	417	154244889	-	Xaut_0939	-	major facilitator transporter
932	 66.08	0	1060097..1060945	+	282	154244890	-	Xaut_0940	-	5-carboxymethyl-2-hydroxymuconate Delta-isomerase
933	 66.74	0	1061143..1062579	+	478	154244891	-	Xaut_0941	-	Fmu (Sun) domain-containing protein
934	 67.55	0	1062627..1064666	-	679	154244892	-	Xaut_0942	-	radical SAM domain-containing protein
935	 65.32	0	1064771..1065289	-	172	154244893	-	Xaut_0943	-	hypothetical protein
936	 67.26	0	1065240..1065917	-	225	154244894	-	Xaut_0944	-	hypothetical protein
937	 68.03	0	1066009..1066374	-	121	154244895	-	Xaut_0945	-	hypothetical protein
938	 68.53	0	1066568..1068013	+	481	154244896	-	Xaut_0946	-	phospholipase D/transphosphatidylase
939	 68.16	0	1068087..1068623	+	178	154244897	-	Xaut_0947	-	HPP family protein
940	 71.33	0	1068796..1069653	-	285	154244898	-	Xaut_0948	-	LysR family transcriptional regulator
941	 65.33	0	1069751..1070125	+	124	154244899	-	Xaut_0949	-	4-oxalocrotonate tautomerase
942	 69.83	0	1070198..1070671	-	157	154244900	-	Xaut_0950	-	cupin 2 domain-containing protein
943	 70.92	0	1070789..1071658	+	289	154244901	-	Xaut_0951	-	LysR family transcriptional regulator
944	 67.96	0	1071707..1072246	-	179	154244902	-	Xaut_0952	-	ECF subfamily RNA polymerase sigma-24 factor
945	 71.37	0	1072416..1073096	-	226	154244903	-	Xaut_0953	-	hypothetical protein
946	 69.37	0	1073249..1073803	-	184	154244904	-	Xaut_0954	-	hypothetical protein
947	 69.14	0	1074017..1074946	+	309	154244905	-	Xaut_0955	-	alpha/beta hydrolase fold
948	 67.06	0	1075036..1076049	+	337	154244906	-	Xaut_0956	-	alpha/beta hydrolase fold
949	 69.00	0	1076119..1076760	-	213	154244907	-	Xaut_0957	-	hypothetical protein
950	 66.85	0	1076757..1077314	-	185	154244908	-	Xaut_0958	-	RNA polymerase sigma factor
951	 67.03	0	1077579..1077857	+	92	154244909	-	Xaut_0959	-	hypothetical protein
952	 71.14	0	1077997..1080006	-	669	154244910	-	Xaut_0960	-	hypothetical protein
953	 63.13	-1	1080044..1080835	-	263	154244911	-	Xaut_0961	-	oxidoreductase molybdopterin binding
954	 62.78	-1	1080848..1081516	-	222	154244912	-	Xaut_0962	-	hypothetical protein
955	 72.04	+1	1081636..1082100	+	154	154244913	-	Xaut_0963	-	PRC-barrel domain-containing protein
956	 68.81	0	1082127..1083386	-	419	154244914	-	Xaut_0964	-	methylthioribose kinase
957	 71.10	0	1083403..1084281	-	292	154244915	-	Xaut_0965	-	purine phosphorylase family 1
958	 72.29	+1	1084290..1085018	-	242	154244916	-	Xaut_0966	-	glycosyl transferase family protein
959	 65.07	0	1085018..1086085	-	355	154244917	-	Xaut_0967	-	radical SAM domain-containing protein
960	 71.25	0	1086117..1086989	-	290	154244918	-	Xaut_0968	-	hypothetical protein
961	 67.85	0	1087113..1087790	-	225	154244919	-	Xaut_0969	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
962	 70.29	0	1087813..1088364	-	183	154244920	-	Xaut_0970	-	alkylhydroperoxidase
963	 70.97	0	1088541..1089470	+	309	154244921	-	Xaut_0971	-	LysR family transcriptional regulator
964	 70.44	0	1089482..1090381	-	299	154244922	-	Xaut_0972	-	LysR family transcriptional regulator
965	 67.62	0	1090477..1091103	+	208	154244923	-	Xaut_0973	-	NAD(P)H dehydrogenase (quinone)
966	 66.98	0	1091257..1092213	+	318	154244924	-	Xaut_0974	-	metallophosphoesterase
967	 64.74	0	1092271..1092633	+	120	154244925	-	Xaut_0975	-	blue (type1) copper domain-containing protein
968	 71.76	+1	1092868..1093476	+	202	154244926	-	Xaut_0976	-	ECF subfamily RNA polymerase sigma-24 factor
969	 69.41	0	1093473..1094309	+	278	154244927	-	Xaut_0977	-	putative transmembrane anti-sigma factor
970	 65.73	0	1094313..1095056	-	247	154244928	-	Xaut_0978	-	haloacid dehalogenase, type II
971	 68.36	0	1095118..1095708	-	196	154244929	-	Xaut_0979	-	TetR family transcriptional regulator
972	 63.03	-1	1095787..1096500	-	237	154244930	-	Xaut_0980	-	glutathione S-transferase domain-containing protein
973	 68.64	0	1096669..1097379	+	236	154244931	-	Xaut_0981	-	glutathione S-transferase domain-containing protein
974	 68.40	0	1097417..1098223	+	268	154244932	-	Xaut_0982	-	short-chain dehydrogenase/reductase SDR
975	 69.48	0	1098401..1099288	-	295	154244933	-	Xaut_0983	-	helix-turn-helix domain-containing protein
976	 68.90	0	1099575..1100738	+	387	154244934	-	Xaut_0984	-	NADH:flavin oxidoreductase/NADH oxidase
977	 68.04	0	1100779..1101069	+	96	154244935	-	Xaut_0985	-	hypothetical protein
978	 68.15	0	1101074..1102687	+	537	154244936	-	Xaut_0986	-	SSS family solute/sodium (Na+) symporter
979	 67.47	0	1103024..1105138	+	704	154244937	-	Xaut_0987	-	hypothetical protein
67.51	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.