IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.51   STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
783	 63.33	-1	884233..884652	-	139	154244741	-	Xaut_0791	-	hypothetical protein
784	 61.16	-1	884649..885902	-	417	154244742	-	Xaut_0792	-	integrase family protein
785	 62.53	-1	886057..886443	-	128	154244743	-	Xaut_0793	-	DNA repair protein RadC
786	 67.65	0	886564..886968	-	134	154244744	-	Xaut_0794	-	hypothetical protein
787	 68.02	0	886965..887186	-	73	154244745	-	Xaut_0795	-	putative ArdC antirestriction protein
788	 62.81	-1	887428..888774	-	448	154244746	-	Xaut_0796	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
789	 67.36	0	888822..891125	-	767	154244747	-	Xaut_0797	-	mercuric reductase
790	 63.30	-1	891372..891668	-	98	154244748	-	Xaut_0798	-	heavy metal transport/detoxification protein
791	 66.88	0	891690..892148	-	152	154244749	-	Xaut_0799	-	mercuric transporter MerT
792	 68.53	0	892202..892630	+	142	154244750	-	Xaut_0800	-	MerR family transcriptional regulator
793	 68.82	0	892647..893573	-	308	154244751	-	Xaut_0801	-	hypothetical protein
794	 71.20	0	893790..894230	-	146	154244752	-	Xaut_0802	-	hypothetical protein
795	 68.93	0	894227..896392	-	721	154244753	-	Xaut_0803	-	hypothetical protein
796	 68.51	0	896389..898230	-	613	154244754	-	Xaut_0804	-	hypothetical protein
797	 66.95	0	898227..899645	-	472	154244755	-	Xaut_0805	-	integrase domain-containing protein
798	 66.67	0	899903..900646	-	247	154244756	-	Xaut_0806	-	hypothetical protein
799	 55.41	-2	900884..902065	-	393	154244757	-	Xaut_0807	-	hypothetical protein
800	 67.83	0	902168..905347	-	1059	154244758	-	Xaut_0808	-	DNA polymerase III, alpha subunit
801	 70.60	0	905344..906867	-	507	154244759	-	Xaut_0809	-	hypothetical protein
802	 73.10	+1	906782..907543	-	253	154244760	-	Xaut_0810	-	hypothetical protein
803	 64.93	0	907707..908396	+	229	154244761	-	Xaut_0811	-	hypothetical protein
804	 62.53	-1	908417..908779	+	120	154244762	-	Xaut_0812	-	hypothetical protein
805	 55.94	-2	908936..909457	+	173	154244763	-	Xaut_0813	-	hypothetical protein
806	 59.78	-1	909454..910731	+	425	154244764	-	Xaut_0814	-	helix-turn-helix domain-containing protein
807	 58.20	-2	910718..911803	+	361	154244765	-	Xaut_0815	-	hypothetical protein
808	 59.90	-1	911757..912362	-	201	154244766	-	Xaut_0816	-	putative phage-related protein
809	 61.02	-1	912575..913123	-	182	154244767	-	Xaut_0817	-	nuclease (SNase-like)
810	 65.69	0	913120..913629	-	169	154244768	-	Xaut_0818	-	GCN5-related N-acetyltransferase
811	 67.00	0	913634..913933	-	99	154244769	-	Xaut_0819	-	hypothetical protein
812	 61.18	-1	914173..914427	+	84	154244770	-	Xaut_0820	-	hypothetical protein
813	 63.00	-1	914447..916435	+	662	154244771	-	Xaut_0821	-	recombinase
814	 67.64	0	916488..918134	-	548	154244772	-	Xaut_0822	-	glucose-methanol-choline oxidoreductase
815	 67.85	0	918127..918465	-	112	154244773	-	Xaut_0823	-	hypothetical protein
816	 70.09	0	918479..919849	-	456	154244774	-	Xaut_0824	-	sugar transporter
817	 69.92	0	919974..921296	-	440	154244775	-	Xaut_0825	-	DegT/DnrJ/EryC1/StrS aminotransferase
818	 70.64	0	921455..922789	+	444	154244776	-	Xaut_0826	-	sugar transporter
819	 72.44	+1	922908..924032	+	374	154244777	-	Xaut_0827	-	RND family efflux transporter MFP subunit
820	 67.99	0	924029..927124	+	1031	154244778	-	Xaut_0828	-	acriflavin resistance protein
821	 65.30	0	927325..928350	+	341	154244779	-	Xaut_0829	-	patatin
822	 68.92	0	928354..929817	+	487	154244780	-	Xaut_0830	-	citrate transporter
823	 67.91	0	929973..931181	+	402	154244781	-	Xaut_0831	-	sodium/glutamate symporter
824	 61.49	-1	931556..932038	+	160	154244782	-	Xaut_0832	-	flavodoxin FldA
825	 70.27	0	932047..932490	+	147	154244783	-	Xaut_0833	-	hypothetical protein
826	 70.77	0	932518..932883	-	121	154244784	-	Xaut_0834	-	hypothetical protein
827	 67.47	0	933144..933893	+	249	154244785	-	Xaut_0835	-	putative translaldolase
828	 73.00	+1	934040..935365	+	441	154244786	-	Xaut_0836	-	Ppx/GppA phosphatase
829	 69.80	0	935362..936126	+	254	154244787	-	Xaut_0837	-	ribosomal RNA methyltransferase RrmJ/FtsJ
830	 68.12	0	936120..937559	-	479	154244788	-	Xaut_0838	-	major facilitator transporter
831	 65.87	0	937754..938005	+	83	154244789	-	Xaut_0839	-	hypothetical protein
832	 69.79	0	938073..939098	-	341	154244790	-	Xaut_0840	-	quinone oxidoreductase putative PIG3
833	 65.61	0	939349..939537	+	62	154244791	-	Xaut_0841	-	hypothetical protein
834	 72.51	+1	939856..940266	+	136	154244792	-	Xaut_0842	-	hypothetical protein
835	 63.11	-1	940377..940601	-	74	154244793	-	Xaut_0843	-	ribosomal protein L31
836	 72.39	+1	940692..942509	+	605	154244794	-	Xaut_0844	-	lipid ABC transporter ATPase/inner membrane protein
837	 70.21	0	942610..943089	-	159	154244795	-	Xaut_0845	-	GCN5-related N-acetyltransferase
838	 68.62	0	943258..944280	-	340	154244796	-	Xaut_0846	-	OmpA/MotB domain-containing protein
839	 68.43	0	944319..945398	-	359	154244797	-	Xaut_0847	-	hypothetical protein
840	 70.79	0	945526..946422	-	298	154244798	-	Xaut_0848	-	hypothetical protein
841	 69.44	0	946530..947504	+	324	154244799	-	Xaut_0849	-	ATPase
842	 72.72	+1	947519..948493	+	324	154244800	-	Xaut_0850	-	hypothetical protein
843	 72.73	+1	948490..949083	+	197	154244801	-	Xaut_0851	-	hypothetical protein
844	 70.42	0	949080..950117	+	345	154244802	-	Xaut_0852	-	von Willebrand factor type A
845	 73.42	+1	950117..952159	+	680	154244803	-	Xaut_0853	-	TPR repeat-containing protein
846	 72.26	+1	952156..953925	+	589	154244804	-	Xaut_0854	-	hypothetical protein
847	 67.10	0	953968..954894	-	308	154244805	-	Xaut_0855	-	LysR family transcriptional regulator
848	 66.39	0	954990..955700	+	236	154244806	-	Xaut_0856	-	isochorismatase hydrolase
849	 63.95	0	955818..956885	+	355	154244807	-	Xaut_0857	-	extracellular solute-binding protein
850	 66.99	0	956912..957838	+	308	154244808	-	Xaut_0858	-	binding-protein-dependent transport systems inner membrane component
851	 66.42	0	957847..958653	+	268	154244809	-	Xaut_0859	-	binding-protein-dependent transport systems inner membrane component
852	 69.68	0	958679..959740	+	353	154244810	-	Xaut_0860	-	ABC transporter related
853	 62.46	-1	959845..960819	+	324	154244811	-	Xaut_0861	-	membrane dipeptidase
854	 66.86	0	960861..961388	+	175	154244812	-	Xaut_0862	-	4-vinyl reductase 4VR
855	 64.33	0	961471..962538	+	355	154244813	-	Xaut_0863	-	extracellular solute-binding protein
856	 67.31	0	962566..963492	+	308	154244814	-	Xaut_0864	-	binding-protein-dependent transport systems inner membrane component
857	 66.92	0	963492..964286	+	264	154244815	-	Xaut_0865	-	binding-protein-dependent transport systems inner membrane component
858	 71.67	+1	964501..965040	-	179	154244816	-	Xaut_0866	-	sarcosine oxidase gamma subunit
859	 69.56	0	965033..968044	-	1003	154244817	-	Xaut_0867	-	sarcosine oxidase alpha subunit family protein
860	 68.71	0	968046..968339	-	97	154244818	-	Xaut_0868	-	sarcosine oxidase delta subunit family protein
861	 65.95	0	968351..969604	-	417	154244819	-	Xaut_0869	-	sarcosine oxidase beta subunit family protein
862	 69.80	0	969928..971202	-	424	154244820	-	Xaut_0870	-	glycine hydroxymethyltransferase
863	 69.86	0	971246..972592	-	448	154244821	-	Xaut_0871	-	L-serine dehydratase 1
864	 71.71	+1	972763..973911	+	382	154244822	-	Xaut_0872	-	AraC family transcriptional regulator
865	 66.67	0	973951..974274	+	107	154244823	-	Xaut_0873	-	antibiotic biosynthesis monooxygenase
866	 72.22	+1	974422..974781	+	119	154244824	-	Xaut_0874	-	regulatory protein ArsR
867	 69.12	0	974774..975343	+	189	154244825	-	Xaut_0875	-	protein tyrosine phosphatase
868	 69.86	0	975340..975777	+	145	154244826	-	Xaut_0876	-	arsenate reductase
869	 67.52	0	975801..976856	+	351	154244827	-	Xaut_0877	-	arsenical-resistance protein
870	 68.74	0	976853..977575	+	240	154244828	-	Xaut_0878	-	arsenate resistance ArsH
871	 66.80	0	977955..980210	+	751	154244829	-	Xaut_0879	-	fibronectin type III domain-containing protein
872	 69.06	0	980371..981747	-	458	154244830	-	Xaut_0880	-	SAF domain-containing protein
873	 68.35	0	981832..982782	+	316	154244831	-	Xaut_0881	-	LysR family transcriptional regulator
874	 67.87	0	983081..984820	-	579	154244832	-	Xaut_0882	-	amidohydrolase 3
875	 49.61	-2	985078..985335	+	85	154244833	-	Xaut_0883	-	putative acyl carrier protein
876	 66.72	0	985399..987312	+	637	154244834	-	Xaut_0884	-	FkbH like protein
877	 63.33	-1	987316..988752	+	478	154244835	-	Xaut_0885	-	membrane bound O-acyl transferase MBOAT family protein
878	 67.92	0	988807..989925	+	372	154244836	-	Xaut_0886	-	hypothetical protein
879	 70.00	0	990085..991464	+	459	154244837	-	Xaut_0887	-	glutamine synthetase catalytic region
880	 68.39	0	991446..992201	-	251	154244838	-	Xaut_0888	-	glutamine amidotransferase class-I
881	 70.23	0	992496..993197	-	233	154244839	-	Xaut_0889	-	ABC transporter related
882	 69.58	0	993184..993972	-	262	154244840	-	Xaut_0890	-	ABC transporter related
67.51	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.