IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.51   STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
738	 65.75	0	831955..832716	-	253	154244696	-	Xaut_0745	-	P-type conjugative transfer protein TrbJ
739	 66.42	0	832713..835151	-	812	154244697	-	Xaut_0746	-	AAA ATPase
740	 70.57	0	835159..835440	-	93	154244698	-	Xaut_0747	-	conjugal transfer protein TrbB
741	 62.76	-1	835440..835772	-	110	154244699	-	Xaut_0748	-	conjugal transfer protein TrbC
742	 68.70	0	835769..836752	-	327	154244700	-	Xaut_0749	-	P-type conjugative transfer ATPase TrbB
743	 65.06	0	836922..837356	-	144	154244701	-	Xaut_0750	-	hypothetical protein
744	 65.01	0	837365..839350	-	661	154244702	-	Xaut_0751	-	TRAG family protein
745	 66.29	0	839381..841258	-	625	154244703	-	Xaut_0752	-	hypothetical protein
746	 66.76	0	841677..842765	-	362	154244704	-	Xaut_0753	-	transposase IS116/IS110/IS902 family protein
747	 66.01	0	842956..843717	-	253	154244705	-	Xaut_0754	-	lytic transglycosylase catalytic
748	 63.39	-1	843721..844056	-	111	154244706	-	Xaut_0755	-	hypothetical protein
749	 65.75	0	844102..844647	-	181	154244707	-	Xaut_0756	-	putative conjugal transfer protein precursor
750	 60.95	-1	844644..845150	-	168	154244708	-	Xaut_0757	-	hypothetical protein
751	 66.67	0	845147..845401	-	84	154244709	-	Xaut_0758	-	hypothetical protein
752	 65.73	0	845398..846036	-	212	154244710	-	Xaut_0759	-	cobyrinic acid ac-diamide synthase
753	 68.73	0	846033..846323	-	96	154244711	-	Xaut_0760	-	hypothetical protein
754	 65.29	0	846479..846988	-	169	154244712	-	Xaut_0761	-	hypothetical protein
755	 63.77	0	847386..847661	-	91	154244713	-	Xaut_0762	-	hypothetical protein
756	 66.06	0	848236..848562	-	108	154244714	-	Xaut_0764	-	hypothetical protein
757	 60.51	-1	849125..849676	-	183	154244715	-	Xaut_0765	-	hypothetical protein
758	 65.53	0	849720..850160	-	146	154244716	-	Xaut_0766	-	hypothetical protein
759	 63.48	-1	850305..850586	-	93	154244717	-	Xaut_0767	-	hypothetical protein
760	 58.72	-2	850825..851529	+	234	154244718	-	Xaut_0768	-	hypothetical protein
761	 63.54	0	851575..852501	-	308	154244719	-	Xaut_0769	-	hypothetical protein
762	 66.28	0	852820..853860	-	346	154244720	-	Xaut_0770	-	hypothetical protein
763	 65.96	0	853930..856056	-	708	154244721	-	Xaut_0771	-	nuclease
764	 64.85	0	856208..857419	-	403	154244722	-	Xaut_0772	-	hypothetical protein
765	 61.55	-1	857707..859152	+	481	154244723	-	Xaut_0773	-	peptidase C14 caspase catalytic subunit p20
766	 63.51	-1	859453..860244	+	263	154244724	-	Xaut_0774	-	ECF subfamily RNA polymerase sigma-24 factor
767	 64.40	0	860241..860903	+	220	154244725	-	Xaut_0775	-	hypothetical protein
768	 67.66	0	860907..864338	+	1143	154244726	-	Xaut_0776	-	UvrD/REP helicase
769	 68.04	0	864447..864956	+	169	154244727	-	Xaut_0777	-	hypothetical protein
770	 67.93	0	864953..865426	+	157	154244728	-	Xaut_0778	-	hypothetical protein
771	 67.05	0	865374..865892	+	172	154244729	-	Xaut_0779	-	hypothetical protein
772	 69.52	0	865906..867273	+	455	154244730	-	Xaut_0780	-	UBA/ThiF-type NAD/FAD binding fold containing protein
773	 70.39	0	867537..870197	+	886	154244731	-	Xaut_0781	-	hypothetical protein
774	 68.47	0	870194..873517	+	1107	154244732	-	Xaut_0782	-	UvrD/REP helicase
775	 66.37	0	873665..874342	+	225	154244733	-	Xaut_0783	-	hypothetical protein
776	 64.32	0	874339..875445	+	368	154244734	-	Xaut_0784	-	hypothetical protein
777	 63.13	-1	875442..877817	+	791	154244735	-	Xaut_0785	-	EcoEI R domain-containing protein
778	 57.81	-2	877832..879964	+	710	154244736	-	Xaut_0786	-	N-6 DNA methylase
779	 59.16	-2	880018..881562	+	514	154244737	-	Xaut_0787	-	hypothetical protein
780	 62.59	-1	881559..882245	+	228	154244738	-	Xaut_0788	-	hypothetical protein
781	 64.60	0	882242..883402	-	386	154244739	-	Xaut_0789	-	hypothetical protein
782	 58.74	-2	883476..884207	+	243	154244740	-	Xaut_0790	-	hypothetical protein
783	 63.33	-1	884233..884652	-	139	154244741	-	Xaut_0791	-	hypothetical protein
784	 61.16	-1	884649..885902	-	417	154244742	-	Xaut_0792	-	integrase family protein
785	 62.53	-1	886057..886443	-	128	154244743	-	Xaut_0793	-	DNA repair protein RadC
786	 67.65	0	886564..886968	-	134	154244744	-	Xaut_0794	-	hypothetical protein
787	 68.02	0	886965..887186	-	73	154244745	-	Xaut_0795	-	putative ArdC antirestriction protein
788	 62.81	-1	887428..888774	-	448	154244746	-	Xaut_0796	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
789	 67.36	0	888822..891125	-	767	154244747	-	Xaut_0797	-	mercuric reductase
790	 63.30	-1	891372..891668	-	98	154244748	-	Xaut_0798	-	heavy metal transport/detoxification protein
791	 66.88	0	891690..892148	-	152	154244749	-	Xaut_0799	-	mercuric transporter MerT
792	 68.53	0	892202..892630	+	142	154244750	-	Xaut_0800	-	MerR family transcriptional regulator
793	 68.82	0	892647..893573	-	308	154244751	-	Xaut_0801	-	hypothetical protein
794	 71.20	0	893790..894230	-	146	154244752	-	Xaut_0802	-	hypothetical protein
795	 68.93	0	894227..896392	-	721	154244753	-	Xaut_0803	-	hypothetical protein
796	 68.51	0	896389..898230	-	613	154244754	-	Xaut_0804	-	hypothetical protein
797	 66.95	0	898227..899645	-	472	154244755	-	Xaut_0805	-	integrase domain-containing protein
798	 66.67	0	899903..900646	-	247	154244756	-	Xaut_0806	-	hypothetical protein
799	 55.41	-2	900884..902065	-	393	154244757	-	Xaut_0807	-	hypothetical protein
800	 67.83	0	902168..905347	-	1059	154244758	-	Xaut_0808	-	DNA polymerase III, alpha subunit
801	 70.60	0	905344..906867	-	507	154244759	-	Xaut_0809	-	hypothetical protein
802	 73.10	+1	906782..907543	-	253	154244760	-	Xaut_0810	-	hypothetical protein
803	 64.93	0	907707..908396	+	229	154244761	-	Xaut_0811	-	hypothetical protein
804	 62.53	-1	908417..908779	+	120	154244762	-	Xaut_0812	-	hypothetical protein
805	 55.94	-2	908936..909457	+	173	154244763	-	Xaut_0813	-	hypothetical protein
806	 59.78	-1	909454..910731	+	425	154244764	-	Xaut_0814	-	helix-turn-helix domain-containing protein
807	 58.20	-2	910718..911803	+	361	154244765	-	Xaut_0815	-	hypothetical protein
808	 59.90	-1	911757..912362	-	201	154244766	-	Xaut_0816	-	putative phage-related protein
809	 61.02	-1	912575..913123	-	182	154244767	-	Xaut_0817	-	nuclease (SNase-like)
810	 65.69	0	913120..913629	-	169	154244768	-	Xaut_0818	-	GCN5-related N-acetyltransferase
811	 67.00	0	913634..913933	-	99	154244769	-	Xaut_0819	-	hypothetical protein
812	 61.18	-1	914173..914427	+	84	154244770	-	Xaut_0820	-	hypothetical protein
813	 63.00	-1	914447..916435	+	662	154244771	-	Xaut_0821	-	recombinase
814	 67.64	0	916488..918134	-	548	154244772	-	Xaut_0822	-	glucose-methanol-choline oxidoreductase
815	 67.85	0	918127..918465	-	112	154244773	-	Xaut_0823	-	hypothetical protein
816	 70.09	0	918479..919849	-	456	154244774	-	Xaut_0824	-	sugar transporter
817	 69.92	0	919974..921296	-	440	154244775	-	Xaut_0825	-	DegT/DnrJ/EryC1/StrS aminotransferase
818	 70.64	0	921455..922789	+	444	154244776	-	Xaut_0826	-	sugar transporter
819	 72.44	+1	922908..924032	+	374	154244777	-	Xaut_0827	-	RND family efflux transporter MFP subunit
820	 67.99	0	924029..927124	+	1031	154244778	-	Xaut_0828	-	acriflavin resistance protein
821	 65.30	0	927325..928350	+	341	154244779	-	Xaut_0829	-	patatin
822	 68.92	0	928354..929817	+	487	154244780	-	Xaut_0830	-	citrate transporter
823	 67.91	0	929973..931181	+	402	154244781	-	Xaut_0831	-	sodium/glutamate symporter
824	 61.49	-1	931556..932038	+	160	154244782	-	Xaut_0832	-	flavodoxin FldA
825	 70.27	0	932047..932490	+	147	154244783	-	Xaut_0833	-	hypothetical protein
826	 70.77	0	932518..932883	-	121	154244784	-	Xaut_0834	-	hypothetical protein
827	 67.47	0	933144..933893	+	249	154244785	-	Xaut_0835	-	putative translaldolase
828	 73.00	+1	934040..935365	+	441	154244786	-	Xaut_0836	-	Ppx/GppA phosphatase
829	 69.80	0	935362..936126	+	254	154244787	-	Xaut_0837	-	ribosomal RNA methyltransferase RrmJ/FtsJ
830	 68.12	0	936120..937559	-	479	154244788	-	Xaut_0838	-	major facilitator transporter
831	 65.87	0	937754..938005	+	83	154244789	-	Xaut_0839	-	hypothetical protein
832	 69.79	0	938073..939098	-	341	154244790	-	Xaut_0840	-	quinone oxidoreductase putative PIG3
833	 65.61	0	939349..939537	+	62	154244791	-	Xaut_0841	-	hypothetical protein
834	 72.51	+1	939856..940266	+	136	154244792	-	Xaut_0842	-	hypothetical protein
835	 63.11	-1	940377..940601	-	74	154244793	-	Xaut_0843	-	ribosomal protein L31
836	 72.39	+1	940692..942509	+	605	154244794	-	Xaut_0844	-	lipid ABC transporter ATPase/inner membrane protein
837	 70.21	0	942610..943089	-	159	154244795	-	Xaut_0845	-	GCN5-related N-acetyltransferase
67.51	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.