IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.51   STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
29	 68.06	0	29268..29843	+	191	154243987	-	Xaut_0029	-	hypothetical protein
30	 64.62	0	29922..30458	+	178	154243988	-	Xaut_0030	-	hypothetical protein
31	 70.82	0	30458..31444	+	328	154243989	-	Xaut_0031	-	YVTN beta-propeller repeat-containing protein
32	 64.51	0	31646..32155	-	169	154243990	-	Xaut_0032	-	formaldehyde-activating protein
33	 65.22	0	32664..32939	+	91	154243991	-	Xaut_0033	-	hypothetical protein
34	 68.03	0	33093..34046	+	317	154243992	-	Xaut_0034	-	peptidase M48 Ste24p
35	 72.09	+1	34202..36967	+	921	154243993	-	Xaut_0035	-	DNA mismatch repair protein
36	 72.96	+1	37170..38552	-	460	154243994	-	Xaut_0036	-	hypothetical protein
37	 68.75	0	38706..40052	-	448	154243995	-	Xaut_0037	-	adenylosuccinate synthetase
38	 70.90	0	40184..41599	+	471	154243996	-	Xaut_0038	-	sun protein
39	 71.06	0	41667..43511	+	614	154243997	-	Xaut_0039	-	heparinase II/III family protein
40	 70.91	0	43520..44203	-	227	154243998	-	Xaut_0040	-	GntR family transcriptional regulator
41	 68.12	0	44236..44922	-	228	154243999	-	Xaut_0041	-	putative alcohol dehydrogenase class III
42	 66.75	0	45014..46186	-	390	154244000	-	Xaut_0042	-	extracellular ligand-binding receptor
43	 68.74	0	46275..46997	-	240	154244001	-	Xaut_0043	-	ABC transporter related
44	 68.37	0	46999..47760	-	253	154244002	-	Xaut_0044	-	ABC transporter related
45	 67.62	0	47757..48599	-	280	154244003	-	Xaut_0045	-	inner-membrane translocator
46	 68.61	0	48599..49471	-	290	154244004	-	Xaut_0046	-	inner-membrane translocator
47	 64.81	0	49805..51631	+	608	154244005	-	Xaut_0047	-	ATPase central domain-containing protein
48	 70.59	0	51711..52601	-	296	154244006	-	Xaut_0048	-	DNA binding domain-containing protein
49	 69.99	0	52721..53443	+	240	154244007	-	Xaut_0049	-	molybdenum cofactor synthesis domain-containing protein
50	 68.76	0	53475..54428	-	317	154244008	-	Xaut_0050	-	cation diffusion facilitator family transporter
51	 62.32	-1	54663..55421	-	252	154244009	-	Xaut_0051	-	hypothetical protein
52	 66.20	0	55577..56425	-	282	154244010	-	Xaut_0052	-	enoyl-(acyl carrier protein) reductase
53	 67.65	0	56652..57875	-	407	154244011	-	Xaut_0053	-	3-oxoacyl-(acyl carrier protein) synthase I
54	 65.95	0	57930..58487	-	185	154244012	-	Xaut_0054	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
55	 62.41	-1	58831..59253	+	140	154244013	-	Xaut_0055	-	large conductance mechanosensitive channel protein
56	 69.55	0	59274..60347	-	357	154244014	-	Xaut_0056	-	dihydroorotate dehydrogenase 2
57	 66.24	0	60356..61054	-	232	154244015	-	Xaut_0057	-	orotate phosphoribosyltransferase
58	 69.54	0	61785..65297	-	1170	154244016	-	Xaut_0058	-	integral membrane sensor hybrid histidine kinase
59	 54.24	-2	65598..66410	+	270	154244017	-	Xaut_0059	-	hypothetical protein
60	 68.72	0	66525..67205	-	226	154244018	-	Xaut_0060	-	phospholipase/carboxylesterase
61	 67.25	0	67298..67813	-	171	154244019	-	Xaut_0061	-	MarR family transcriptional regulator
62	 68.07	0	67965..68393	+	142	154244020	-	Xaut_0062	-	OsmC family protein
63	 65.17	0	68632..69234	+	200	154244021	-	Xaut_0063	-	hypothetical protein
64	 68.39	0	69302..70864	-	520	154244022	-	Xaut_0064	-	RNA polymerase, sigma 54 subunit, RpoN
65	 68.27	0	70926..71858	-	310	154244023	-	Xaut_0065	-	ABC transporter related
66	 68.40	0	72102..72794	-	230	154244024	-	Xaut_0066	-	OstA family protein
67	 68.84	0	72791..73711	-	306	154244025	-	Xaut_0067	-	hypothetical protein
68	 68.12	0	73947..74567	-	206	154244026	-	Xaut_0068	-	3'-5' exonuclease
69	 69.34	0	74724..75209	+	161	154244027	-	Xaut_0069	-	cyanovirin containing protein
70	 69.26	0	75294..77147	-	617	154244028	-	Xaut_0070	-	dihydroxy-acid dehydratase
71	 69.82	0	77388..78812	+	474	154244029	-	Xaut_0071	-	aromatic-L-amino-acid decarboxylase
72	 75.51	+2	78818..79360	-	180	154244030	-	Xaut_0072	-	hypothetical protein
73	 73.28	+1	79363..79755	-	130	154244031	-	Xaut_0073	-	chromosomal replication initiator DnaA domain-containing protein
74	 73.41	+1	79981..80247	+	88	154244032	-	Xaut_0074	-	hypothetical protein
75	 69.20	0	80313..81299	-	328	154244033	-	Xaut_0075	-	cysteine synthase A
76	 70.52	0	81349..81789	-	146	154244034	-	Xaut_0076	-	BadM/Rrf2 family transcriptional regulator
77	 66.88	0	81800..82276	-	158	154244035	-	Xaut_0077	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
78	 70.28	0	82273..83490	-	405	154244036	-	Xaut_0078	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
79	 69.48	0	83713..84921	+	402	154244037	-	Xaut_0079	-	putative diguanylate cyclase
80	 63.79	0	84976..86331	+	451	154244038	-	Xaut_0080	-	transposase IS4 family protein
81	 67.99	0	86322..87755	+	477	154244039	-	Xaut_0081	-	diguanylate cyclase/phosphodiesterase
82	 66.11	0	88123..89916	+	597	154244040	-	Xaut_0082	-	transcriptional regulator NifA
83	 61.03	-1	90310..90504	+	64	154244041	-	Xaut_0083	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
84	 61.89	-1	90834..92318	+	494	154244042	-	Xaut_0084	-	FeS assembly protein SufB
85	 65.22	0	92375..93136	+	253	154244043	-	Xaut_0085	-	FeS assembly ATPase SufC
86	 69.80	0	93141..94481	+	446	154244044	-	Xaut_0086	-	FeS assembly protein SufD
87	 65.00	0	94482..95744	+	420	154244045	-	Xaut_0087	-	SufS subfamily cysteine desulfurase
88	 62.83	-1	96387..97298	+	303	154244046	-	Xaut_0088	-	nitrogenase reductase
89	 61.82	-1	97375..98880	+	501	154244047	-	Xaut_0089	-	nitrogenase molybdenum-iron protein alpha chain
90	 62.24	-1	98968..100527	+	519	154244048	-	Xaut_0090	-	nitrogenase molybdenum-iron protein beta chain
91	 64.77	0	100648..102549	+	633	154244049	-	Xaut_0091	-	nitrogenase MoFe cofactor biosynthesis protein NifE
92	 64.92	0	102559..103986	+	475	154244050	-	Xaut_0092	-	nitrogenase molybdenum-iron cofactor biosynthesis protein NifN
93	 59.60	-1	104011..104406	+	131	154244051	-	Xaut_0093	-	nitrogen fixation protein NifX
94	 59.45	-2	104415..104885	+	156	154244052	-	Xaut_0094	-	hypothetical protein
95	 59.20	-2	104901..105101	+	66	154244053	-	Xaut_0095	-	hypothetical protein
96	 61.62	-1	105120..105416	+	98	154244054	-	Xaut_0096	-	ferredoxin III 4(4Fe-4S) nif-specific
97	 65.77	0	105560..106228	+	222	154244055	-	Xaut_0097	-	NifQ family protein
98	 61.64	-1	106468..106785	-	105	154244056	-	Xaut_0098	-	hypothetical protein
99	 59.92	-1	106791..107042	-	83	154244057	-	Xaut_0099	-	hypothetical protein
100	 65.51	0	107055..107915	-	286	154244058	-	Xaut_0100	-	rhodanese domain-containing protein
101	 69.26	0	108034..108495	-	153	154244059	-	Xaut_0101	-	hypothetical protein
102	 70.92	0	108815..110458	+	547	154244060	-	Xaut_0102	-	amine oxidase
103	 64.50	0	110470..110931	+	153	154244061	-	Xaut_0103	-	Rieske (2Fe-2S) domain-containing protein
104	 65.61	0	110897..111181	-	94	154244062	-	Xaut_0104	-	hypothetical protein
105	 60.71	-1	111282..111869	-	195	154244063	-	Xaut_0105	-	hypothetical protein
106	 64.80	0	112347..112667	+	106	154244064	-	Xaut_0106	-	iron-sulfur cluster assembly accessory protein
107	 66.67	0	112733..113098	+	121	154244065	-	Xaut_0107	-	NifU domain-containing protein
108	 66.75	0	113138..114340	+	400	154244066	-	Xaut_0108	-	aminotransferase class V
109	 60.65	-1	114527..114742	+	71	154244067	-	Xaut_0109	-	NifT/FixU family protein
110	 67.12	0	114749..115621	+	290	154244068	-	Xaut_0110	-	hypothetical protein
111	 64.75	0	115938..117500	+	520	154244069	-	Xaut_0111	-	nitrogenase cofactor biosynthesis protein NifB
112	 61.78	-1	117621..117845	+	74	154244070	-	Xaut_0112	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
113	 66.67	0	117857..118171	+	104	154244071	-	Xaut_0113	-	HesB/YadR/YfhF-family protein
114	 65.45	0	118238..118813	+	191	154244072	-	Xaut_0114	-	hypothetical protein
115	 67.44	0	118803..119582	+	259	154244073	-	Xaut_0115	-	LRV FeS4 cluster domain-containing protein
116	 56.57	-2	119579..119905	+	108	154244074	-	Xaut_0116	-	NifZ family protein
117	 61.79	-1	119902..120147	+	81	154244075	-	Xaut_0117	-	NifZ family protein
118	 62.73	-1	120195..120524	+	109	154244076	-	Xaut_0118	-	hypothetical protein
119	 67.42	0	120613..120876	+	87	154244077	-	Xaut_0119	-	hypothetical protein
120	 64.84	0	120876..122078	+	400	154244078	-	Xaut_0120	-	DegT/DnrJ/EryC1/StrS aminotransferase
121	 64.13	0	122130..122444	+	104	154244079	-	Xaut_0121	-	putative ferredoxin, 2Fe-2S
122	 64.44	0	122670..122894	+	74	154244080	-	Xaut_0122	-	hypothetical protein
123	 64.56	0	123228..123560	-	110	154244081	-	Xaut_0123	-	glutaredoxin-like protein
124	 64.10	0	123633..123866	-	77	154244082	-	Xaut_0124	-	BolA family protein
125	 67.08	0	124028..124987	+	319	154244083	-	Xaut_0125	-	hypothetical protein
126	 65.62	0	125030..125509	+	159	154244084	-	Xaut_0126	-	hypothetical protein
127	 59.60	-1	125612..126007	+	131	154244085	-	Xaut_0127	-	hypothetical protein
128	 64.21	0	126108..126392	-	94	154244086	-	Xaut_0128	-	hypothetical protein
67.51	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.