IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.51   STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
694	 63.04	-1	790062..792047	-	661	154244652	-	Xaut_0701	-	TRAG family protein
695	 68.10	0	792069..793808	-	579	154244653	-	Xaut_0702	-	hypothetical protein
696	 66.76	0	794364..795452	-	362	154244654	-	Xaut_0703	-	transposase IS116/IS110/IS902 family protein
697	 67.59	0	795643..796398	-	251	154244655	-	Xaut_0704	-	lytic transglycosylase catalytic
698	 66.67	0	796402..796788	-	128	154244656	-	Xaut_0705	-	hypothetical protein
699	 68.86	0	796809..797354	-	181	154244657	-	Xaut_0706	-	conjugal transfer protein precursor
700	 65.10	0	797351..797860	-	169	154244658	-	Xaut_0707	-	hypothetical protein
701	 67.87	0	797857..798105	-	82	154244659	-	Xaut_0708	-	hypothetical protein
702	 67.74	0	798102..798755	-	217	154244660	-	Xaut_0709	-	cobyrinic acid ac-diamide synthase
703	 62.88	-1	798752..799912	-	386	154244661	-	Xaut_0710	-	replication protein A
704	 67.73	0	799912..800193	-	93	154244662	-	Xaut_0711	-	putative transcriptional regulator
705	 66.18	0	800333..800950	-	205	154244663	-	Xaut_0712	-	hypothetical protein
706	 66.67	0	801219..801494	-	91	154244664	-	Xaut_0713	-	hypothetical protein
707	 62.88	-1	801594..801857	-	87	154244665	-	Xaut_0714	-	XRE family transcriptional regulator
708	 66.36	0	802076..802402	-	108	154244666	-	Xaut_0715	-	hypothetical protein
709	 64.27	0	802404..802778	-	124	154244667	-	Xaut_0716	-	hypothetical protein
710	 65.99	0	802988..803428	-	146	154244668	-	Xaut_0717	-	hypothetical protein
711	 63.43	-1	803580..804506	-	308	154244669	-	Xaut_0718	-	hypothetical protein
712	 66.76	0	804811..805851	-	346	154244670	-	Xaut_0719	-	hypothetical protein
713	 66.57	0	805851..810173	-	1440	154244671	-	Xaut_0720	-	putative methylase/helicase
714	 56.72	-2	810386..810757	+	123	154244672	-	Xaut_0721	-	hypothetical protein
715	 58.36	-2	810767..811741	+	324	154244673	-	Xaut_0722	-	peptidase C14 caspase catalytic subunit p20
716	 60.62	-1	812037..812681	-	214	154244674	-	Xaut_0723	-	hypothetical protein
717	 64.75	0	812674..813090	-	138	154244675	-	Xaut_0724	-	hypothetical protein
718	 67.92	0	813157..813714	-	185	154244676	-	Xaut_0725	-	hypothetical protein
719	 66.26	0	813915..814157	-	80	154244677	-	Xaut_0726	-	hypothetical protein
720	 65.36	0	814499..814804	-	101	154244678	-	Xaut_0727	-	hypothetical protein
721	 66.19	0	814867..815286	-	139	154244679	-	Xaut_0728	-	hypothetical protein
722	 62.71	-1	815298..815777	-	159	154244680	-	Xaut_0729	-	hypothetical protein
723	 66.71	0	815878..818082	-	734	154244681	-	Xaut_0730	-	nuclease
724	 59.62	-1	818131..818343	-	70	154244682	-	Xaut_0731	-	DNA repair protein RadC
725	 51.35	-2	818411..818632	-	73	154244683	-	Xaut_0732	-	hypothetical protein
726	 55.28	-2	819336..819458	-	40	154244684	-	Xaut_0733	-	hypothetical protein
727	 61.80	-1	819561..820505	-	314	154244685	-	Xaut_0734	-	LysR family transcriptional regulator
728	 59.22	-2	820615..821151	+	178	154244686	-	Xaut_0735	-	cupin 2 domain-containing protein
729	 60.82	-1	821224..822387	+	387	154244687	-	Xaut_0736	-	RND family efflux transporter MFP subunit
730	 59.49	-2	822384..825548	+	1054	154244688	-	Xaut_0737	-	acriflavin resistance protein
731	 60.95	-1	825822..826766	+	314	154244689	-	Xaut_0738	-	LysR family transcriptional regulator
732	 61.47	-1	827145..827375	-	76	154244690	-	Xaut_0739	-	hypothetical protein
733	 67.58	0	827379..828584	-	401	154244691	-	Xaut_0740	-	conjugation TrbI family protein
734	 65.50	0	828581..829606	-	341	154244692	-	Xaut_0741	-	P-type conjugative transfer protein TrbG
735	 66.81	0	829603..830286	-	227	154244693	-	Xaut_0742	-	conjugal transfer protein
736	 68.74	0	830286..831638	-	450	154244694	-	Xaut_0743	-	P-type conjugative transfer protein TrbL
737	 69.42	0	831642..831932	-	96	154244695	-	Xaut_0744	-	hypothetical protein
738	 65.75	0	831955..832716	-	253	154244696	-	Xaut_0745	-	P-type conjugative transfer protein TrbJ
739	 66.42	0	832713..835151	-	812	154244697	-	Xaut_0746	-	AAA ATPase
740	 70.57	0	835159..835440	-	93	154244698	-	Xaut_0747	-	conjugal transfer protein TrbB
741	 62.76	-1	835440..835772	-	110	154244699	-	Xaut_0748	-	conjugal transfer protein TrbC
742	 68.70	0	835769..836752	-	327	154244700	-	Xaut_0749	-	P-type conjugative transfer ATPase TrbB
743	 65.06	0	836922..837356	-	144	154244701	-	Xaut_0750	-	hypothetical protein
744	 65.01	0	837365..839350	-	661	154244702	-	Xaut_0751	-	TRAG family protein
745	 66.29	0	839381..841258	-	625	154244703	-	Xaut_0752	-	hypothetical protein
746	 66.76	0	841677..842765	-	362	154244704	-	Xaut_0753	-	transposase IS116/IS110/IS902 family protein
747	 66.01	0	842956..843717	-	253	154244705	-	Xaut_0754	-	lytic transglycosylase catalytic
748	 63.39	-1	843721..844056	-	111	154244706	-	Xaut_0755	-	hypothetical protein
749	 65.75	0	844102..844647	-	181	154244707	-	Xaut_0756	-	putative conjugal transfer protein precursor
750	 60.95	-1	844644..845150	-	168	154244708	-	Xaut_0757	-	hypothetical protein
751	 66.67	0	845147..845401	-	84	154244709	-	Xaut_0758	-	hypothetical protein
752	 65.73	0	845398..846036	-	212	154244710	-	Xaut_0759	-	cobyrinic acid ac-diamide synthase
753	 68.73	0	846033..846323	-	96	154244711	-	Xaut_0760	-	hypothetical protein
754	 65.29	0	846479..846988	-	169	154244712	-	Xaut_0761	-	hypothetical protein
755	 63.77	0	847386..847661	-	91	154244713	-	Xaut_0762	-	hypothetical protein
756	 66.06	0	848236..848562	-	108	154244714	-	Xaut_0764	-	hypothetical protein
757	 60.51	-1	849125..849676	-	183	154244715	-	Xaut_0765	-	hypothetical protein
758	 65.53	0	849720..850160	-	146	154244716	-	Xaut_0766	-	hypothetical protein
759	 63.48	-1	850305..850586	-	93	154244717	-	Xaut_0767	-	hypothetical protein
760	 58.72	-2	850825..851529	+	234	154244718	-	Xaut_0768	-	hypothetical protein
761	 63.54	0	851575..852501	-	308	154244719	-	Xaut_0769	-	hypothetical protein
762	 66.28	0	852820..853860	-	346	154244720	-	Xaut_0770	-	hypothetical protein
763	 65.96	0	853930..856056	-	708	154244721	-	Xaut_0771	-	nuclease
764	 64.85	0	856208..857419	-	403	154244722	-	Xaut_0772	-	hypothetical protein
765	 61.55	-1	857707..859152	+	481	154244723	-	Xaut_0773	-	peptidase C14 caspase catalytic subunit p20
766	 63.51	-1	859453..860244	+	263	154244724	-	Xaut_0774	-	ECF subfamily RNA polymerase sigma-24 factor
767	 64.40	0	860241..860903	+	220	154244725	-	Xaut_0775	-	hypothetical protein
768	 67.66	0	860907..864338	+	1143	154244726	-	Xaut_0776	-	UvrD/REP helicase
769	 68.04	0	864447..864956	+	169	154244727	-	Xaut_0777	-	hypothetical protein
770	 67.93	0	864953..865426	+	157	154244728	-	Xaut_0778	-	hypothetical protein
771	 67.05	0	865374..865892	+	172	154244729	-	Xaut_0779	-	hypothetical protein
772	 69.52	0	865906..867273	+	455	154244730	-	Xaut_0780	-	UBA/ThiF-type NAD/FAD binding fold containing protein
773	 70.39	0	867537..870197	+	886	154244731	-	Xaut_0781	-	hypothetical protein
774	 68.47	0	870194..873517	+	1107	154244732	-	Xaut_0782	-	UvrD/REP helicase
775	 66.37	0	873665..874342	+	225	154244733	-	Xaut_0783	-	hypothetical protein
776	 64.32	0	874339..875445	+	368	154244734	-	Xaut_0784	-	hypothetical protein
777	 63.13	-1	875442..877817	+	791	154244735	-	Xaut_0785	-	EcoEI R domain-containing protein
778	 57.81	-2	877832..879964	+	710	154244736	-	Xaut_0786	-	N-6 DNA methylase
779	 59.16	-2	880018..881562	+	514	154244737	-	Xaut_0787	-	hypothetical protein
780	 62.59	-1	881559..882245	+	228	154244738	-	Xaut_0788	-	hypothetical protein
781	 64.60	0	882242..883402	-	386	154244739	-	Xaut_0789	-	hypothetical protein
782	 58.74	-2	883476..884207	+	243	154244740	-	Xaut_0790	-	hypothetical protein
783	 63.33	-1	884233..884652	-	139	154244741	-	Xaut_0791	-	hypothetical protein
784	 61.16	-1	884649..885902	-	417	154244742	-	Xaut_0792	-	integrase family protein
785	 62.53	-1	886057..886443	-	128	154244743	-	Xaut_0793	-	DNA repair protein RadC
786	 67.65	0	886564..886968	-	134	154244744	-	Xaut_0794	-	hypothetical protein
787	 68.02	0	886965..887186	-	73	154244745	-	Xaut_0795	-	putative ArdC antirestriction protein
788	 62.81	-1	887428..888774	-	448	154244746	-	Xaut_0796	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
789	 67.36	0	888822..891125	-	767	154244747	-	Xaut_0797	-	mercuric reductase
790	 63.30	-1	891372..891668	-	98	154244748	-	Xaut_0798	-	heavy metal transport/detoxification protein
791	 66.88	0	891690..892148	-	152	154244749	-	Xaut_0799	-	mercuric transporter MerT
792	 68.53	0	892202..892630	+	142	154244750	-	Xaut_0800	-	MerR family transcriptional regulator
793	 68.82	0	892647..893573	-	308	154244751	-	Xaut_0801	-	hypothetical protein
67.51	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.