IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
597	 67.82	0	674023..674283	+	86	154244555	-	Xaut_0600	-	hypothetical protein
598	 68.38	0	674280..675503	+	407	154244556	-	Xaut_0601	-	P-type conjugative transfer protein TrbL
599	 68.55	0	675500..676189	+	229	154244557	-	Xaut_0602	-	conjugal transfer protein
600	 66.38	0	676186..677238	+	350	154244558	-	Xaut_0603	-	P-type conjugative transfer protein TrbG
601	 67.71	0	677235..678482	+	415	154244559	-	Xaut_0604	-	conjugation TrbI family protein
602	 61.71	-1	678484..678705	+	73	154244560	-	Xaut_0605	-	hypothetical protein
603	 55.88	-2	678728..679645	-	305	154244561	-	Xaut_0606	-	LysR family transcriptional regulator
604	 63.32	-1	679764..682271	-	835	154244562	-	Xaut_0607	-	heavy metal translocating P-type ATPase
605	 58.97	-2	683621..684166	-	181	154244563	-	Xaut_0610	-	hypothetical protein
606	 60.13	-1	684177..684482	-	101	154244564	-	Xaut_0611	-	hypothetical protein
607	 63.37	-1	684850..685152	-	100	154244565	-	Xaut_0612	-	hypothetical protein
608	 71.97	+1	685164..685559	-	131	154244566	-	Xaut_0613	-	hypothetical protein
609	 67.29	0	685584..688793	-	1069	154244567	-	Xaut_0614	-	CzcA family heavy metal efflux protein
610	 70.40	0	688790..689191	-	133	154244568	-	Xaut_0615	-	nitrogen regulatory protein P-II
611	 69.70	0	689181..690170	-	329	154244569	-	Xaut_0616	-	RND family efflux transporter MFP subunit
612	 70.24	0	690167..691483	-	438	154244570	-	Xaut_0617	-	outer membrane efflux protein
613	 67.84	0	691549..691974	-	141	154244571	-	Xaut_0618	-	hypothetical protein
614	 62.18	-1	693196..694554	-	452	154244572	-	Xaut_0620	-	integrase family protein
615	 59.92	-1	695055..695306	+	83	154244573	-	Xaut_0621	-	hypothetical protein
616	 66.73	0	695423..697075	-	550	154244574	-	Xaut_0622	-	AMP-dependent synthetase and ligase
617	 70.02	0	697132..698889	-	585	154244575	-	Xaut_0623	-	acyl-CoA dehydrogenase domain-containing protein
618	 69.93	0	698923..701220	-	765	154244576	-	Xaut_0624	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
619	 71.33	0	701220..702356	-	378	154244577	-	Xaut_0625	-	acetyl-CoA acetyltransferase
620	 62.35	-1	702675..703322	+	215	154244578	-	Xaut_0626	-	TetR family transcriptional regulator
621	 49.84	-2	703505..705400	-	631	154244579	-	Xaut_0627	-	FkbH like protein
622	 68.05	0	706291..706797	+	168	154244580	-	Xaut_0628	-	peptide deformylase
623	 66.89	0	706834..707271	-	145	154244581	-	Xaut_0629	-	glyoxalase/bleomycin resistance protein/dioxygenase
624	 70.76	0	707363..708241	+	292	154244582	-	Xaut_0630	-	LysR family transcriptional regulator
625	 70.86	0	708266..710842	-	858	154244583	-	Xaut_0631	-	magnesium-translocating P-type ATPase
626	 70.26	0	711187..713274	+	695	154244584	-	Xaut_0632	-	PAS/PAC sensor hybrid histidine kinase
627	 67.72	0	713331..713804	+	157	154244585	-	Xaut_0633	-	globin
628	 70.44	0	713896..714663	-	255	154244586	-	Xaut_0634	-	two component transcriptional regulator
629	 71.89	+1	714779..715792	-	337	154244587	-	Xaut_0635	-	hypothetical protein
630	 69.57	0	715789..716202	-	137	154244588	-	Xaut_0636	-	hypothetical protein
631	 71.34	0	716364..717197	-	277	154244589	-	Xaut_0637	-	aspartate/glutamate/uridylate kinase
632	 68.76	0	717210..718022	-	270	154244590	-	Xaut_0638	-	aspartate/glutamate/uridylate kinase
633	 67.91	0	718354..718914	-	186	154244591	-	Xaut_0639	-	GCN5-related N-acetyltransferase
634	 66.12	0	718948..721305	-	785	154244592	-	Xaut_0640	-	ornithine decarboxylase
635	 70.21	0	721437..722141	-	234	154244593	-	Xaut_0641	-	ABC transporter related
636	 67.86	0	722134..722970	-	278	154244594	-	Xaut_0642	-	ABC transporter related
637	 68.01	0	722967..724010	-	347	154244595	-	Xaut_0643	-	inner-membrane translocator
638	 67.12	0	724007..724879	-	290	154244596	-	Xaut_0644	-	inner-membrane translocator
639	 65.37	0	725062..726222	-	386	154244597	-	Xaut_0645	-	extracellular ligand-binding receptor
640	 72.41	+1	726254..727471	-	405	154244598	-	Xaut_0646	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
641	 73.26	+1	727468..728331	-	287	154244599	-	Xaut_0647	-	molybdopterin dehydrogenase FAD-binding
642	 69.21	0	728328..730685	-	785	154244600	-	Xaut_0648	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
643	 72.05	+1	730682..731536	-	284	154244601	-	Xaut_0649	-	esterase/lipase-like protein
644	 68.00	0	731533..732810	-	425	154244602	-	Xaut_0650	-	dihydroorotase
645	 65.90	0	732950..733468	+	172	154244603	-	Xaut_0651	-	MarR family transcriptional regulator
646	 69.59	0	733543..734295	-	250	154244604	-	Xaut_0652	-	hypothetical protein
647	 68.92	0	734510..735307	+	265	154244605	-	Xaut_0653	-	peptidase M15D vanX D-ala-D-ala dipeptidase
648	 68.43	0	735328..735723	-	131	154244606	-	Xaut_0654	-	hypothetical protein
649	 73.37	+1	735773..736279	-	168	154244607	-	Xaut_0655	-	hypothetical protein
650	 74.47	+1	738404..739723	-	439	154244608	-	Xaut_0657	-	Sel1 domain-containing protein
651	 71.40	0	739710..741167	-	485	154244609	-	Xaut_0658	-	selenocysteine synthase
652	 72.12	+1	741177..742130	-	317	154244610	-	Xaut_0659	-	formate dehydrogenase accessory protein FdhE
653	 65.54	0	742303..743010	-	235	154244611	-	Xaut_0660	-	formate dehydrogenase, gamma subunit
654	 65.43	0	743007..743978	-	323	154244612	-	Xaut_0661	-	formate dehydrogenase, beta subunit
655	 63.02	-1	743996..746434	-	812	154244613	-	Xaut_0662	-	formate dehydrogenase, alpha subunit
656	 63.00	-1	746483..747082	-	199	154244614	-	Xaut_0663	-	molybdopterin oxidoreductase Fe4S4 region
657	 73.08	+1	747414..748130	+	238	154244615	-	Xaut_0664	-	redoxin domain-containing protein
658	 68.28	0	748132..749247	+	371	154244616	-	Xaut_0665	-	transglutaminase domain-containing protein
659	 71.23	0	749475..750527	+	350	154244617	-	Xaut_0666	-	selenide, water dikinase
660	 73.88	+1	750612..751013	+	133	154244618	-	Xaut_0667	-	hypothetical protein
661	 69.17	0	750967..752601	-	544	154244619	-	Xaut_0668	-	hypothetical protein
662	 68.80	0	752695..753819	-	374	154244620	-	Xaut_0669	-	alcohol dehydrogenase
663	 66.39	0	754174..754536	+	120	154244621	-	Xaut_0670	-	hypothetical protein
664	 68.40	0	754592..755227	+	211	154244622	-	Xaut_0671	-	hypothetical protein
665	 61.24	-1	755313..757100	-	595	154244623	-	Xaut_0672	-	UvrD/REP helicase
666	 61.88	-1	757117..758976	-	619	154244624	-	Xaut_0673	-	ATP-dependent endonuclease family protein
667	 56.93	-2	759100..760875	-	591	154244625	-	Xaut_0674	-	hypothetical protein
668	 67.42	0	761052..761315	+	87	154244626	-	Xaut_0675	-	5-dehydro-4-deoxyglucarate dehydratase
669	 69.47	0	761408..762511	-	367	154244627	-	Xaut_0676	-	alcohol dehydrogenase
670	 63.57	0	762809..764164	-	451	154244628	-	Xaut_0677	-	transposase IS4 family protein
671	 65.49	0	764358..764612	+	84	154244629	-	Xaut_0678	-	hypothetical protein
672	 55.67	-2	764693..765556	+	287	154244630	-	Xaut_0679	-	hypothetical protein
673	 61.33	-1	765582..769085	+	1167	154244631	-	Xaut_0680	-	helicase domain-containing protein
674	 60.46	-1	769085..770356	+	423	154244632	-	Xaut_0681	-	hypothetical protein
675	 58.93	-2	770353..772899	+	848	154244633	-	Xaut_0682	-	hypothetical protein
676	 64.38	0	772896..773771	-	291	154244634	-	Xaut_0683	-	integrase catalytic region
677	 61.96	-1	773768..774043	-	91	154244635	-	Xaut_0684	-	transposase IS3/IS911 family protein
678	 59.41	-2	774054..774494	+	146	154244636	-	Xaut_0685	-	hypothetical protein
679	 62.63	-1	774507..777803	+	1098	154244637	-	Xaut_0686	-	AAA family ATPase
680	 62.41	-1	777841..778827	-	328	154244638	-	Xaut_0687	-	LysR family transcriptional regulator
681	 63.12	-1	779158..779778	+	206	154244639	-	Xaut_0688	-	TetR family transcriptional regulator
682	 64.10	0	779785..780018	-	77	154244640	-	Xaut_0689	-	hypothetical protein
683	 67.36	0	780021..781172	-	383	154244641	-	Xaut_0690	-	conjugation TrbI family protein
684	 68.44	0	781169..782185	-	338	154244642	-	Xaut_0691	-	P-type conjugative transfer protein TrbG
685	 64.78	0	782182..782871	-	229	154244643	-	Xaut_0692	-	conjugal transfer protein
686	 67.18	0	782868..784223	-	451	154244644	-	Xaut_0693	-	P-type conjugative transfer protein TrbL
687	 69.10	0	784227..784514	-	95	154244645	-	Xaut_0694	-	hypothetical protein
688	 64.05	0	784532..785296	-	254	154244646	-	Xaut_0695	-	P-type conjugative transfer protein TrbJ
689	 65.45	0	785308..787851	-	847	154244647	-	Xaut_0696	-	AAA ATPase
690	 66.31	0	787862..788143	-	93	154244648	-	Xaut_0697	-	conjugal transfer protein TrbB
691	 63.06	-1	788143..788475	-	110	154244649	-	Xaut_0698	-	conjugal transfer protein TrbC
692	 68.81	0	788472..789452	-	326	154244650	-	Xaut_0699	-	P-type conjugative transfer ATPase TrbB
693	 66.21	0	789619..790056	-	145	154244651	-	Xaut_0700	-	hypothetical protein
694	 63.04	-1	790062..792047	-	661	154244652	-	Xaut_0701	-	TRAG family protein
695	 68.10	0	792069..793808	-	579	154244653	-	Xaut_0702	-	hypothetical protein
696	 66.76	0	794364..795452	-	362	154244654	-	Xaut_0703	-	transposase IS116/IS110/IS902 family protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.