IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3934	 71.05	0	4391467..4392765	+	432	154247892	-	Xaut_3969	-	major facilitator transporter
3935	 62.54	-1	4393072..4394283	-	403	154247893	-	Xaut_3970	-	putative metal cation transporter
3936	 55.48	-2	4394280..4395218	-	312	154247894	-	Xaut_3971	-	multicopper oxidase type 3
3937	 65.69	0	4395993..4399166	-	1057	154247895	-	Xaut_3972	-	CzcA family heavy metal efflux protein
3938	 67.16	0	4399163..4400584	-	473	154247896	-	Xaut_3973	-	RND family efflux transporter MFP subunit
3939	 64.95	0	4400581..4400988	-	135	154247897	-	Xaut_3974	-	hypothetical protein
3940	 64.23	0	4401120..4401488	-	122	154247898	-	Xaut_3975	-	hypothetical protein
3941	 62.64	-1	4401575..4402642	-	355	154247899	-	Xaut_3976	-	hypothetical protein
3942	 62.31	-1	4402646..4403287	-	213	154247900	-	Xaut_3977	-	hypothetical protein
3943	 72.81	+1	4403581..4405860	-	759	154247901	-	Xaut_3978	-	heavy metal translocating P-type ATPase
3944	 64.76	0	4405898..4406422	+	174	154247902	-	Xaut_3979	-	MerR family transcriptional regulator
3945	 69.48	0	4406464..4406925	+	153	154247903	-	Xaut_3980	-	hypothetical protein
3946	 71.31	0	4406991..4408262	+	423	154247904	-	Xaut_3981	-	outer membrane efflux protein
3947	 71.11	0	4408259..4409248	+	329	154247905	-	Xaut_3982	-	RND family efflux transporter MFP subunit
3948	 71.50	+1	4409238..4409630	+	130	154247906	-	Xaut_3983	-	nitrogen regulatory protein P-II
3949	 68.54	0	4409627..4412836	+	1069	154247907	-	Xaut_3984	-	CzcA family heavy metal efflux protein
3950	 64.81	0	4412859..4413236	+	125	154247908	-	Xaut_3985	-	hypothetical protein
3951	 62.67	-1	4415104..4417608	+	834	154247909	-	Xaut_3987	-	heavy metal translocating P-type ATPase
3952	 39.70	-2	4417610..4418143	+	177	154247910	-	Xaut_3988	-	hypothetical protein
3953	 53.71	-2	4418696..4419706	+	336	154247911	-	Xaut_3989	-	LysR family transcriptional regulator
3954	 62.81	-1	4419594..4419878	-	94	154247912	-	Xaut_3990	-	hypothetical protein
3955	 69.00	0	4419880..4421124	-	414	154247913	-	Xaut_3991	-	conjugation TrbI family protein
3956	 66.86	0	4421121..4422173	-	350	154247914	-	Xaut_3992	-	P-type conjugative transfer protein TrbG
3957	 68.99	0	4422170..4422859	-	229	154247915	-	Xaut_3993	-	conjugal transfer protein
3958	 69.61	0	4422856..4424145	-	429	154247916	-	Xaut_3994	-	P-type conjugative transfer protein TrbL
3959	 67.05	0	4424142..4424405	-	87	154247917	-	Xaut_3995	-	hypothetical protein
3960	 67.07	0	4424415..4425149	-	244	154247918	-	Xaut_3996	-	P-type conjugative transfer protein TrbJ
3961	 67.73	0	4425146..4427584	-	812	154247919	-	Xaut_3997	-	AAA ATPase
3962	 71.06	0	4427595..4427867	-	90	154247920	-	Xaut_3998	-	conjugal transfer protein TrbB
3963	 64.26	0	4427867..4428199	-	110	154247921	-	Xaut_3999	-	conjugal transfer protein TrbC
3964	 68.59	0	4428196..4429182	-	328	154247922	-	Xaut_4000	-	P-type conjugative transfer ATPase TrbB
3965	 57.81	-2	4429663..4430961	+	432	154247923	-	Xaut_4001	-	hypothetical protein
3966	 55.64	-2	4430986..4431774	+	262	154247924	-	Xaut_4002	-	hypothetical protein
3967	 63.93	0	4431978..4433000	+	340	154247925	-	Xaut_4003	-	transposase IS116/IS110/IS902 family protein
3968	 65.61	0	4433438..4434292	+	284	154247926	-	Xaut_4005	-	integrase catalytic region
3969	 65.29	0	4434460..4434894	-	144	154247927	-	Xaut_4006	-	hypothetical protein
3970	 66.21	0	4434900..4436879	-	659	154247928	-	Xaut_4007	-	TRAG family protein
3971	 69.31	0	4436904..4438643	-	579	154247929	-	Xaut_4008	-	hypothetical protein
3972	 66.76	0	4439199..4440287	-	362	154247930	-	Xaut_4009	-	transposase IS116/IS110/IS902 family protein
3973	 68.17	0	4440478..4441275	-	265	154247931	-	Xaut_4010	-	lytic transglycosylase catalytic
3974	 68.50	0	4441320..4441865	-	181	154247932	-	Xaut_4011	-	peptidase S26C conjugative transfer signal peptidase TraF
3975	 66.67	0	4441862..4442383	-	173	154247933	-	Xaut_4012	-	hypothetical protein
3976	 69.02	0	4442380..4442634	-	84	154247934	-	Xaut_4013	-	hypothetical protein
3977	 71.87	+1	4442631..4443284	-	217	154247935	-	Xaut_4014	-	cobyrinic acid ac-diamide synthase
3978	 64.76	0	4443281..4444435	-	384	154247936	-	Xaut_4015	-	replication protein A
3979	 71.28	0	4444451..4444732	-	93	154247937	-	Xaut_4016	-	hypothetical protein
3980	 68.11	0	4444873..4445496	-	207	154247938	-	Xaut_4017	-	hypothetical protein
3981	 68.22	0	4445769..4446026	-	85	154247939	-	Xaut_4018	-	hypothetical protein
3982	 65.30	0	4446233..4446451	+	72	154247940	-	Xaut_4019	-	XRE family transcriptional regulator
3983	 66.42	0	4446498..4446908	-	136	154247941	-	Xaut_4020	-	hypothetical protein
3984	 66.21	0	4447479..4447916	-	145	154247942	-	Xaut_4021	-	hypothetical protein
3985	 63.10	-1	4448052..4448219	-	55	154247943	-	Xaut_4022	-	hypothetical protein
3986	 67.53	0	4448605..4449528	-	307	154247944	-	Xaut_4023	-	hypothetical protein
3987	 65.81	0	4449853..4450905	-	350	154247945	-	Xaut_4024	-	hypothetical protein
3988	 67.54	0	4450998..4453061	-	687	154247946	-	Xaut_4025	-	parB-like partition protein
3989	 65.08	0	4453235..4454428	-	397	154247947	-	Xaut_4026	-	hypothetical protein
3990	 59.86	-1	4455077..4455517	+	146	154247948	-	Xaut_4027	-	hypothetical protein
3991	 63.46	-1	4456134..4456445	+	103	154247949	-	Xaut_4028	-	hypothetical protein
3992	 62.68	-1	4457011..4458414	-	467	154247950	-	Xaut_4029	-	integrase family protein
3993	 65.28	0	4458732..4459091	-	119	154247951	-	Xaut_4030	-	hypothetical protein
3994	 64.72	0	4459335..4459796	+	153	154247952	-	Xaut_4031	-	hypothetical protein
3995	 66.20	0	4459837..4461339	-	500	154247953	-	Xaut_4032	-	amino acid permease-associated region
3996	 71.43	0	4461454..4462230	-	258	154247954	-	Xaut_4033	-	ethanolamine ammonia-lyase
3997	 66.74	0	4462227..4463615	-	462	154247955	-	Xaut_4034	-	ethanolamine ammonia lyase large subunit
3998	 67.90	0	4463703..4464593	-	296	154247956	-	Xaut_4035	-	extracellular solute-binding protein
3999	 67.27	0	4464890..4465885	+	331	154247957	-	Xaut_4036	-	ABC sulfate transport system, periplasmic binding protein
4000	 74.24	+1	4465893..4466684	+	263	154247958	-	Xaut_4037	-	binding-protein-dependent transport systems inner membrane component
4001	 74.31	+1	4466687..4467484	+	265	154247959	-	Xaut_4038	-	ABC transporter related
4002	 68.30	0	4467494..4468414	-	306	154247960	-	Xaut_4039	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
4003	 67.13	0	4468702..4469772	-	356	154247961	-	Xaut_4040	-	alcohol dehydrogenase
4004	 62.39	-1	4469786..4470136	-	116	154247962	-	Xaut_4041	-	alkylhydroperoxidase
4005	 69.72	0	4470151..4470936	-	261	154247963	-	Xaut_4042	-	short-chain dehydrogenase/reductase SDR
4006	 68.63	0	4471027..4472145	-	372	154247964	-	Xaut_4043	-	branched-chain alpha-keto acid dehydrogenase subunit E2
4007	 67.16	0	4472400..4473422	-	340	154247965	-	Xaut_4044	-	transketolase central region
4008	 67.16	0	4473452..4474459	-	335	154247966	-	Xaut_4045	-	pyruvate dehydrogenase (acetyl-transferring)
4009	 71.45	0	4474858..4476864	+	668	154247967	-	Xaut_4046	-	Fis family GAF modulated sigma54 specific transcriptional regulator
4010	 71.91	+1	4477014..4477871	-	285	154247968	-	Xaut_4047	-	hypothetical protein
4011	 70.51	0	4478018..4479397	-	459	154247969	-	Xaut_4048	-	two component, sigma54 specific, Fis family transcriptional regulator
4012	 70.79	0	4479387..4481279	-	630	154247970	-	Xaut_4049	-	histidine kinase
4013	 67.13	0	4481380..4482249	-	289	154247971	-	Xaut_4050	-	ABC transporter related
4014	 67.27	0	4482258..4483079	-	273	154247972	-	Xaut_4051	-	binding-protein-dependent transport systems inner membrane component
4015	 67.04	0	4483090..4484154	-	354	154247973	-	Xaut_4052	-	NMT1/THI5-like domain-containing protein
4016	 65.52	0	4484531..4485751	+	406	154247974	-	Xaut_4053	-	extracellular ligand-binding receptor
4017	 66.56	0	4485901..4486800	+	299	154247975	-	Xaut_4054	-	inner-membrane translocator
4018	 66.37	0	4486805..4488796	+	663	154247976	-	Xaut_4055	-	ABC transporter related
4019	 69.29	0	4488806..4489528	+	240	154247977	-	Xaut_4056	-	ABC transporter related
4020	 74.53	+1	4489820..4491001	-	393	154247978	-	Xaut_4057	-	amidase
4021	 67.55	0	4490998..4492239	-	413	154247979	-	Xaut_4058	-	amidohydrolase 3
4022	 67.51	0	4492266..4493213	-	315	154247980	-	Xaut_4059	-	LysR family transcriptional regulator
4023	 67.41	0	4493511..4494713	+	400	154247981	-	Xaut_4060	-	extracellular ligand-binding receptor
4024	 68.38	0	4494826..4495701	+	291	154247982	-	Xaut_4061	-	inner-membrane translocator
4025	 68.48	0	4495698..4497518	+	606	154247983	-	Xaut_4062	-	ABC transporter related
4026	 66.92	0	4497515..4498291	+	258	154247984	-	Xaut_4063	-	ABC transporter related
4027	 63.65	0	4498332..4499027	+	231	154247985	-	Xaut_4064	-	cyclase family protein
4028	 71.64	+1	4499154..4500560	+	468	154247986	-	Xaut_4065	-	amidase
4029	 66.17	0	4500945..4501145	-	66	154247987	-	Xaut_4066	-	hypothetical protein
4030	 66.88	0	4501295..4502254	-	319	154247988	-	Xaut_4067	-	ferredoxin
4031	 67.15	0	4502559..4503383	-	274	154247989	-	Xaut_4068	-	short-chain dehydrogenase/reductase SDR
4032	 69.48	0	4503395..4503820	-	141	154247990	-	Xaut_4069	-	dehydratase
4033	 67.12	0	4503833..4504276	-	147	154247991	-	Xaut_4070	-	hypothetical protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.