IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3341	 67.44	0	3757751..3758656	-	301	154247299	-	Xaut_3371	-	5-dehydro-4-deoxyglucarate dehydratase
3342	 70.44	0	3758724..3759623	-	299	154247300	-	Xaut_3372	-	GntR domain-containing protein
3343	 66.92	0	3759729..3760529	+	266	154247301	-	Xaut_3373	-	NAD-dependent epimerase/dehydratase
3344	 71.84	+1	3760531..3762057	+	508	154247302	-	Xaut_3374	-	aldehyde dehydrogenase
3345	 72.67	+1	3762077..3762592	-	171	154247303	-	Xaut_3375	-	ureidoglycolate hydrolase
3346	 68.24	0	3762576..3763844	-	422	154247304	-	Xaut_3376	-	allantoate amidohydrolase
3347	 68.09	0	3763844..3764824	-	326	154247305	-	Xaut_3377	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
3348	 69.17	0	3764821..3765900	-	359	154247306	-	Xaut_3378	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
3349	 68.02	0	3765897..3766784	-	295	154247307	-	Xaut_3379	-	binding-protein-dependent transport systems inner membrane component
3350	 66.24	0	3766789..3767733	-	314	154247308	-	Xaut_3380	-	binding-protein-dependent transport systems inner membrane component
3351	 65.95	0	3767802..3769484	-	560	154247309	-	Xaut_3381	-	4-phytase
3352	 71.45	0	3769859..3770548	+	229	154247310	-	Xaut_3382	-	hydantoin racemase
3353	 68.61	0	3770568..3771440	-	290	154247311	-	Xaut_3383	-	putative undecaprenol kinase
3354	 69.72	0	3771909..3772988	+	359	154247312	-	Xaut_3384	-	HflK protein
3355	 68.95	0	3772985..3773905	+	306	154247313	-	Xaut_3385	-	HflC protein
3356	 68.11	0	3773960..3775000	+	346	154247314	-	Xaut_3386	-	hypothetical protein
3357	 65.84	0	3775033..3775275	-	80	154247315	-	Xaut_3387	-	hypothetical protein
3358	 68.98	0	3775521..3777467	+	648	154247316	-	Xaut_3388	-	integral membrane sensor signal transduction histidine kinase
3359	 68.55	0	3777464..3778099	+	211	154247317	-	Xaut_3389	-	response regulator receiver protein
3360	 68.63	0	3778319..3778573	+	84	154247318	-	Xaut_3390	-	hypothetical protein
3361	 61.76	-1	3778869..3779174	-	101	154247319	-	Xaut_3391	-	hypothetical protein
3362	 63.87	0	3779250..3779714	-	154	154247320	-	Xaut_3392	-	hypothetical protein
3363	 68.70	0	3779842..3781071	-	409	154247321	-	Xaut_3393	-	lytic murein transglycosylase
3364	 72.05	+1	3781306..3782253	-	315	154247322	-	Xaut_3394	-	ApbE family lipoprotein
3365	 72.99	+1	3782243..3784441	-	732	154247323	-	Xaut_3395	-	oxidoreductase FAD/NAD(P)-binding subunit
3366	 66.24	0	3784457..3784927	-	156	154247324	-	Xaut_3396	-	hypothetical protein
3367	 71.07	0	3784973..3785335	-	120	154247325	-	Xaut_3397	-	hypothetical protein
3368	 73.82	+1	3785428..3786783	-	451	154247326	-	Xaut_3398	-	integral membrane sensor signal transduction histidine kinase
3369	 67.11	0	3786780..3787451	-	223	154247327	-	Xaut_3399	-	two component transcriptional regulator
3370	 68.07	0	3787589..3787873	+	94	154247328	-	Xaut_3400	-	hypothetical protein
3371	 67.03	0	3787991..3788269	+	92	154247329	-	Xaut_3401	-	hypothetical protein
3372	 68.12	0	3788282..3789454	+	390	154247330	-	Xaut_3402	-	high-affinity nickel-transporter
3373	 68.21	0	3789518..3790228	+	236	154247331	-	Xaut_3403	-	two component transcriptional regulator
3374	 72.13	+1	3790225..3791559	+	444	154247332	-	Xaut_3404	-	integral membrane sensor signal transduction histidine kinase
3375	 72.05	+1	3791641..3793275	+	544	154247333	-	Xaut_3405	-	hypothetical protein
3376	 69.60	0	3793285..3796416	+	1043	154247334	-	Xaut_3406	-	CzcA family heavy metal efflux protein
3377	 69.87	0	3796429..3796803	+	124	154247335	-	Xaut_3407	-	hypothetical protein
3378	 69.57	0	3796865..3798415	+	516	154247336	-	Xaut_3408	-	multicopper oxidase type 2
3379	 63.43	-1	3798743..3799453	+	236	154247337	-	Xaut_3409	-	ErfK/YbiS/YcfS/YnhG family protein
3380	 69.57	0	3799922..3802267	+	781	154247338	-	Xaut_3410	-	TPR repeat-containing protein
3381	 62.43	-1	3802405..3803985	-	526	154247339	-	Xaut_3411	-	sulfatase
3382	 65.88	0	3804326..3805336	-	336	154247340	-	Xaut_3412	-	NapD-like protein
3383	 64.64	0	3805549..3806535	-	328	154247341	-	Xaut_3413	-	hypothetical protein
3384	 63.80	0	3806593..3807534	-	313	154247342	-	Xaut_3414	-	RND family efflux transporter MFP subunit
3385	 67.86	0	3807531..3807782	-	83	154247343	-	Xaut_3415	-	hypothetical protein
3386	 59.23	-2	3808235..3809041	-	268	154247344	-	Xaut_3416	-	hypothetical protein
3387	 62.14	-1	3809122..3809364	-	80	154247345	-	Xaut_3417	-	hypothetical protein
3388	 66.33	0	3809382..3809681	+	99	154247346	-	Xaut_3418	-	regulatory protein ArsR
3389	 66.76	0	3809678..3810742	+	354	154247347	-	Xaut_3419	-	permease
3390	 69.20	0	3810761..3810997	+	78	154247348	-	Xaut_3420	-	thiol-disulfide isomerase and thioredoxin
3391	 62.59	-1	3811462..3811608	-	48	154247349	-	Xaut_3421	-	hypothetical protein
3392	 63.62	0	3811601..3812092	-	163	154247350	-	Xaut_3422	-	hypothetical protein
3393	 71.77	+1	3812089..3813381	-	430	154247351	-	Xaut_3423	-	NAD-dependent epimerase/dehydratase
3394	 68.97	0	3813584..3814060	-	158	154247352	-	Xaut_3424	-	hypothetical protein
3395	 66.67	0	3814057..3814410	-	117	154247353	-	Xaut_3425	-	hypothetical protein
3396	 65.45	0	3814403..3814975	-	190	154247354	-	Xaut_3426	-	hypothetical protein
3397	 71.09	0	3815034..3815621	-	195	154247355	-	Xaut_3427	-	hypothetical protein
3398	 68.99	0	3815715..3815972	+	85	154247356	-	Xaut_3428	-	hypothetical protein
3399	 67.02	0	3816169..3816453	+	94	154247357	-	Xaut_3429	-	hypothetical protein
3400	 44.70	-2	3816679..3818130	+	483	154247358	-	Xaut_3430	-	putative transcriptional regulator
3401	 69.25	0	3818623..3819087	-	154	154247359	-	Xaut_3431	-	hypothetical protein
3402	 70.34	0	3819090..3823505	-	1471	154247360	-	Xaut_3432	-	hypothetical protein
3403	 67.10	0	3823505..3824665	-	386	154247361	-	Xaut_3433	-	hypothetical protein
3404	 65.22	0	3824992..3825405	-	137	154247362	-	Xaut_3434	-	hypothetical protein
3405	 66.57	0	3825417..3826445	-	342	154247363	-	Xaut_3435	-	hypothetical protein
3406	 67.46	0	3826644..3826895	+	83	154247364	-	Xaut_3436	-	hypothetical protein
3407	 65.95	0	3827140..3828528	-	462	154247365	-	Xaut_3437	-	P4 family phage/plasmid primase
3408	 72.11	+1	3828528..3829427	-	299	154247366	-	Xaut_3438	-	virulence-associated protein E
3409	 65.84	0	3829427..3829669	-	80	154247367	-	Xaut_3439	-	hypothetical protein
3410	 65.62	0	3829666..3830049	-	127	154247368	-	Xaut_3440	-	hypothetical protein
3411	 65.70	0	3830046..3830459	-	137	154247369	-	Xaut_3441	-	hypothetical protein
3412	 68.04	0	3830456..3830746	-	96	154247370	-	Xaut_3442	-	hypothetical protein
3413	 55.15	-2	3831323..3832138	-	271	154247371	-	Xaut_3443	-	hypothetical protein
3414	 64.76	0	3832247..3833452	-	401	154247372	-	Xaut_3444	-	integrase family protein
3415	 71.83	+1	3833928..3834683	+	251	154247373	-	Xaut_3445	-	hypothetical protein
3416	 70.04	0	3834938..3836332	+	464	154247374	-	Xaut_3446	-	NUDIX hydrolase
3417	 66.42	0	3836514..3837311	-	265	154247375	-	Xaut_3447	-	hypothetical protein
3418	 64.54	0	3837423..3837893	-	156	154247376	-	Xaut_3448	-	AsnC family transcriptional regulator
3419	 72.70	+1	3838053..3841718	+	1221	154247377	-	Xaut_3449	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
3420	 71.38	0	3841740..3842015	-	91	154247378	-	Xaut_3450	-	hypothetical protein
3421	 71.00	0	3842148..3843071	-	307	154247379	-	Xaut_3451	-	3-hydroxyisobutyrate dehydrogenase
3422	 65.78	0	3843253..3844374	-	373	154247380	-	Xaut_3452	-	chitin deacetylase
3423	 70.37	0	3844439..3845329	-	296	154247381	-	Xaut_3453	-	binding-protein-dependent transport systems inner membrane component
3424	 71.14	0	3845322..3846170	-	282	154247382	-	Xaut_3454	-	ABC transporter related
3425	 65.61	0	3846181..3847224	-	347	154247383	-	Xaut_3455	-	putative ABC transporter (substrate-binding protein)
3426	 69.28	0	3847242..3848429	-	395	154247384	-	Xaut_3456	-	alkanesulfonate monooxygenase
3427	 67.97	0	3848544..3849002	-	152	154247385	-	Xaut_3457	-	TPR repeat-containing protein
3428	 67.82	0	3848999..3849781	-	260	154247386	-	Xaut_3458	-	ABC transporter related
3429	 64.79	0	3849806..3850657	-	283	154247387	-	Xaut_3459	-	binding-protein-dependent transport systems inner membrane component
3430	 67.41	0	3850728..3851807	-	359	154247388	-	Xaut_3460	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
3431	 72.03	+1	3852019..3852876	+	285	154247389	-	Xaut_3461	-	extracellular solute-binding protein
3432	 72.38	+1	3852867..3853952	+	361	154247390	-	Xaut_3462	-	di-haem cytochrome c peroxidase
3433	 69.52	0	3854022..3855107	+	361	154247391	-	Xaut_3463	-	alkanesulfonate monooxygenase
3434	 69.49	0	3855139..3856023	+	294	154247392	-	Xaut_3464	-	binding-protein-dependent transport systems inner membrane component
3435	 74.93	+1	3856020..3856745	+	241	154247393	-	Xaut_3465	-	ABC transporter related
3436	 66.47	0	3856767..3857759	+	330	154247394	-	Xaut_3466	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
3437	 70.57	0	3857817..3859046	+	409	154247395	-	Xaut_3467	-	acyl-CoA dehydrogenase type 2
3438	 70.37	0	3859089..3862439	-	1116	154247396	-	Xaut_3468	-	DNA polymerase III, alpha subunit
3439	 75.95	+2	3862451..3863893	-	480	154247397	-	Xaut_3469	-	hypothetical protein
3440	 77.82	+2	3863907..3864776	-	289	154247398	-	Xaut_3470	-	hypothetical protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.