IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3195	 66.89	0	3573577..3574467	-	296	154247153	-	Xaut_3225	-	hypothetical protein
3196	 67.99	0	3574641..3575927	-	428	154247154	-	Xaut_3226	-	Bcr/CflA subfamily drug resistance transporter
3197	 67.99	0	3576204..3577640	+	478	154247155	-	Xaut_3227	-	phospho-2-dehydro-3-deoxyheptonate aldolase
3198	 67.13	0	3577768..3578844	-	358	154247156	-	Xaut_3228	-	hypothetical protein
3199	 67.72	0	3579006..3580244	-	412	154247157	-	Xaut_3229	-	putative ABC branched-chain amino transporter, periplasmic binding protein
3200	 73.54	+1	3580401..3580895	-	164	154247158	-	Xaut_3230	-	GCN5-related N-acetyltransferase
3201	 74.15	+1	3581141..3582343	-	400	154247159	-	Xaut_3231	-	monooxygenase FAD-binding
3202	 68.22	0	3582389..3582646	-	85	154247160	-	Xaut_3232	-	hypothetical protein
3203	 69.83	0	3583209..3585008	+	599	154247161	-	Xaut_3233	-	ABC transporter related
3204	 71.11	0	3585052..3586785	-	577	154247162	-	Xaut_3234	-	xanthine/uracil/vitamin C permease
3205	 67.39	0	3586979..3587665	-	228	154247163	-	Xaut_3235	-	two component transcriptional regulator
3206	 70.51	0	3587690..3590392	-	900	154247164	-	Xaut_3236	-	osmosensitive K+ channel signal transduction histidine kinase
3207	 71.78	+1	3590477..3591082	-	201	154247165	-	Xaut_3237	-	potassium-transporting ATPase, C subunit
3208	 68.53	0	3591093..3593186	-	697	154247166	-	Xaut_3238	-	K+-transporting ATPase, B subunit
3209	 75.44	+1	3593212..3593382	-	56	154247167	-	Xaut_3239	-	hypothetical protein
3210	 66.14	0	3593384..3595099	-	571	154247168	-	Xaut_3240	-	potassium-transporting ATPase subunit A
3211	 66.01	0	3595215..3595520	+	101	154247169	-	Xaut_3241	-	hypothetical protein
3212	 71.82	+1	3595800..3596168	+	122	154247170	-	Xaut_3242	-	hypothetical protein
3213	 71.93	+1	3596165..3597589	+	474	154247171	-	Xaut_3243	-	amidase
3214	 69.76	0	3597768..3599288	+	506	154247172	-	Xaut_3244	-	AMP-dependent synthetase and ligase
3215	 68.46	0	3599359..3601029	-	556	154247173	-	Xaut_3245	-	glucose-methanol-choline oxidoreductase
3216	 68.24	0	3601149..3602039	+	296	154247174	-	Xaut_3246	-	LysR family transcriptional regulator
3217	 71.30	0	3602029..3602934	-	301	154247175	-	Xaut_3247	-	LysR family transcriptional regulator
3218	 68.76	0	3603036..3604565	+	509	154247176	-	Xaut_3248	-	methylmalonate-semialdehyde dehydrogenase
3219	 65.66	0	3604612..3605010	-	132	154247177	-	Xaut_3249	-	VanZ family protein
3220	 70.23	0	3605478..3607187	+	569	154247178	-	Xaut_3250	-	sulphate transporter
3221	 69.11	0	3607366..3608349	+	327	154247179	-	Xaut_3251	-	phosphate acetyltransferase
3222	 69.55	0	3608352..3609563	+	403	154247180	-	Xaut_3252	-	acetate kinase
3223	 66.18	0	3609635..3611266	+	543	154247181	-	Xaut_3253	-	hypothetical protein
3224	 63.79	0	3611321..3612676	+	451	154247182	-	Xaut_3254	-	transposase IS4 family protein
3225	 67.63	0	3612667..3613596	+	309	154247183	-	Xaut_3255	-	hypothetical protein
3226	 66.55	0	3613593..3614414	+	273	154247184	-	Xaut_3256	-	enoyl-(acyl carrier protein) reductase
3227	 57.14	-2	3614543..3614731	+	62	154247185	-	Xaut_3257	-	hypothetical protein
3228	 69.34	0	3614884..3615519	+	211	154247186	-	Xaut_3258	-	glycosyl transferase family protein
3229	 71.45	0	3615905..3621253	+	1782	154247187	-	Xaut_3259	-	alpha-2-macroglobulin domain-containing protein
3230	 74.18	+1	3621250..3623340	+	696	154247188	-	Xaut_3260	-	penicillin-binding protein 1C
3231	 62.21	-1	3623381..3623896	+	171	154247189	-	Xaut_3261	-	hypothetical protein
3232	 66.23	0	3624210..3624899	-	229	154247190	-	Xaut_3262	-	fumarylacetoacetate (FAA) hydrolase
3233	 69.61	0	3625059..3626042	+	327	154247191	-	Xaut_3263	-	luciferase family protein
3234	 72.19	+1	3626059..3626511	-	150	154247192	-	Xaut_3264	-	putative acetyltransferase
3235	 74.28	+1	3626508..3627545	-	345	154247193	-	Xaut_3265	-	Sua5/YciO/YrdC/YwlC family protein
3236	 69.57	0	3627696..3629486	+	596	154247194	-	Xaut_3266	-	acyl-CoA dehydrogenase domain-containing protein
3237	 69.16	0	3629493..3630536	-	347	154247195	-	Xaut_3267	-	hypothetical protein
3238	 72.19	+1	3630702..3631679	+	325	154247196	-	Xaut_3268	-	import inner membrane translocase subunit Tim44
3239	 66.16	0	3631755..3632744	+	329	154247197	-	Xaut_3269	-	ABC transporter related
3240	 65.35	0	3632741..3633502	+	253	154247198	-	Xaut_3270	-	ABC-2 type transporter
3241	 67.95	0	3633505..3633972	-	155	154247199	-	Xaut_3271	-	MarR family transcriptional regulator
3242	 67.76	0	3634037..3634495	+	152	154247200	-	Xaut_3272	-	alkylhydroperoxidase
3243	 67.95	0	3634541..3636019	-	492	154247201	-	Xaut_3273	-	succinic semialdehyde dehydrogenase
3244	 60.81	-1	3636166..3636387	-	73	154247202	-	Xaut_3274	-	hypothetical protein
3245	 65.22	0	3636588..3636794	+	68	154247203	-	Xaut_3275	-	hypothetical protein
3246	 72.17	+1	3636911..3638236	-	441	154247204	-	Xaut_3276	-	cobyrinic acid a,c-diamide synthase
3247	 73.39	+1	3638287..3639417	+	376	154247205	-	Xaut_3277	-	cobalt-precorrin-6A synthase
3248	 71.00	0	3639426..3640187	-	253	154247206	-	Xaut_3278	-	precorrin-4 C11-methyltransferase
3249	 75.38	+1	3640184..3640573	-	129	154247207	-	Xaut_3279	-	cobalamin biosynthesis protein G cbiG
3250	 73.08	+1	3640570..3641832	-	420	154247208	-	Xaut_3280	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
3251	 73.84	+1	3641870..3642733	+	287	154247209	-	Xaut_3281	-	precorrin-6x reductase
3252	 74.09	+1	3642628..3643476	-	282	154247210	-	Xaut_3282	-	precorrin-3B C17-methyltransferase
3253	 70.11	0	3643473..3644198	-	241	154247211	-	Xaut_3283	-	precorrin-2 C(20)-methyltransferase
3254	 72.48	+1	3644195..3644830	-	211	154247212	-	Xaut_3284	-	precorrin-8X methylmutase
3255	 74.26	+1	3644844..3646160	-	438	154247213	-	Xaut_3285	-	precorrin-3B synthase
3256	 74.59	+1	3646157..3649537	-	1126	154247214	-	Xaut_3286	-	cobaltochelatase
3257	 69.86	0	3649553..3650587	-	344	154247215	-	Xaut_3287	-	cobalamin biosynthesis protein CobW
3258	 73.04	+1	3650587..3651057	-	156	154247216	-	Xaut_3288	-	hypothetical protein
3259	 70.49	0	3651490..3652770	-	426	154247217	-	Xaut_3289	-	amidase
3260	 67.91	0	3652767..3654215	-	482	154247218	-	Xaut_3290	-	chitin deacetylase
3261	 66.95	0	3654219..3654572	-	117	154247219	-	Xaut_3291	-	hydroxyisourate hydrolase
3262	 64.80	0	3654833..3656224	+	463	154247220	-	Xaut_3292	-	uracil-xanthine permease
3263	 69.13	0	3656295..3657308	-	337	154247221	-	Xaut_3293	-	LysR family transcriptional regulator
3264	 63.89	0	3657414..3658637	+	407	154247222	-	Xaut_3294	-	hypothetical protein
3265	 68.94	0	3658750..3659979	+	409	154247223	-	Xaut_3295	-	acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
3266	 72.20	+1	3660205..3662718	+	837	154247224	-	Xaut_3296	-	histidine kinase
3267	 69.72	0	3662715..3664286	+	523	154247225	-	Xaut_3297	-	hypothetical protein
3268	 68.36	0	3664283..3665050	+	255	154247226	-	Xaut_3298	-	nucleotidyl transferase
3269	 74.28	+1	3665138..3668185	+	1015	154247227	-	Xaut_3299	-	double-strand break repair protein AddB
3270	 73.06	+1	3668182..3671685	+	1167	154247228	-	Xaut_3300	-	double-strand break repair helicase AddA
3271	 61.99	-1	3671772..3672092	+	106	154247229	-	Xaut_3301	-	thioredoxin
3272	 68.68	0	3672186..3672533	-	115	154247230	-	Xaut_3302	-	hypothetical protein
3273	 68.97	0	3672682..3673419	-	245	154247231	-	Xaut_3303	-	tRNA pseudouridine synthase A
3274	 71.54	+1	3673439..3674362	-	307	154247232	-	Xaut_3304	-	methionyl-tRNA formyltransferase
3275	 63.39	-1	3674481..3674999	-	172	154247233	-	Xaut_3305	-	peptide deformylase
3276	 69.15	0	3675080..3676246	+	388	154247234	-	Xaut_3306	-	hypothetical protein
3277	 69.39	0	3676359..3677240	+	293	154247235	-	Xaut_3307	-	formamidopyrimidine-DNA glycosylase
3278	 66.54	0	3677448..3678218	+	256	154247236	-	Xaut_3308	-	enoyl-CoA hydratase/isomerase
3279	 62.37	-1	3679299..3680789	-	496	154247237	-	Xaut_3309	-	hypothetical protein
3280	 65.74	0	3680958..3682142	+	394	154247238	-	Xaut_3310	-	dolichyl-phosphate beta-D-mannosyltransferase
3281	 62.99	-1	3682677..3683084	-	135	154247239	-	Xaut_3311	-	molybdenum cofactor biosynthesis protein
3282	 69.55	0	3683166..3683546	-	126	154247240	-	Xaut_3312	-	hypothetical protein
3283	 69.08	0	3683835..3685532	+	565	154247241	-	Xaut_3313	-	protein of unknown function DUF853 NPT hydrolase putative
3284	 67.13	0	3685739..3686173	+	144	154247242	-	Xaut_3314	-	hypothetical protein
3285	 70.08	0	3686486..3687892	+	468	154247243	-	Xaut_3315	-	hypothetical protein
3286	 67.77	0	3688043..3689038	+	331	154247244	-	Xaut_3316	-	Mg2 transporter protein CorA family protein
3287	 65.33	0	3689247..3690668	+	473	154247245	-	Xaut_3317	-	periplasmic protein
3288	 66.67	0	3690756..3692384	-	542	154247246	-	Xaut_3318	-	hypothetical protein
3289	 60.64	-1	3692744..3693340	-	198	154247247	-	Xaut_3319	-	superoxide dismutase
3290	 74.62	+1	3693546..3694337	+	263	154247248	-	Xaut_3320	-	hypothetical protein
3291	 70.78	0	3694517..3695611	+	364	154247249	-	Xaut_3321	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
3292	 72.76	+1	3695616..3696452	-	278	154247250	-	Xaut_3322	-	histidine kinase
3293	 72.36	+1	3696812..3697303	+	163	154247251	-	Xaut_3323	-	nuclease
3294	 62.27	-1	3697382..3698041	+	219	154247252	-	Xaut_3324	-	glutathione S-transferase domain-containing protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.