IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3134	 73.33	+1	3508480..3508689	+	69	154247092	-	Xaut_3163	-	hypothetical protein
3135	 72.25	+1	3508699..3509271	+	190	154247093	-	Xaut_3164	-	gene transfer agent (GTA) orfg11
3136	 75.11	+1	3509300..3509737	-	145	154247094	-	Xaut_3165	-	hypothetical protein
3137	 65.85	0	3510043..3510288	-	81	154247095	-	Xaut_3166	-	hypothetical protein
3138	 72.87	+1	3510451..3511143	-	230	154247096	-	Xaut_3167	-	alginate regulatory protein AlgP
3139	 66.67	0	3511253..3511894	+	213	154247097	-	Xaut_3168	-	hypothetical protein
3140	 69.14	0	3511901..3512791	+	296	154247098	-	Xaut_3169	-	phage protein
3141	 72.11	+1	3512788..3513228	+	146	154247099	-	Xaut_3170	-	NlpC/P60 family phage cell wall peptidase
3142	 71.89	+1	3513260..3517162	+	1300	154247100	-	Xaut_3171	-	gene transfer agent (GTA) orfg15, like protein
3143	 71.65	+1	3517525..3518226	+	233	154247101	-	Xaut_3172	-	hypothetical protein
3144	 73.83	+1	3518260..3518580	+	106	154247102	-	Xaut_3173	-	hypothetical protein
3145	 68.43	0	3518760..3520010	+	416	154247103	-	Xaut_3174	-	hypothetical protein
3146	 75.49	+2	3520049..3520921	+	290	154247104	-	Xaut_3175	-	hypothetical protein
3147	 68.15	0	3521523..3522194	+	223	154247105	-	Xaut_3176	-	two component transcriptional regulator
3148	 70.59	0	3522209..3523636	+	475	154247106	-	Xaut_3177	-	integral membrane sensor signal transduction histidine kinase
3149	 72.60	+1	3523791..3524228	+	145	154247107	-	Xaut_3178	-	LipA a lipoprotein
3150	 68.21	0	3524307..3525146	-	279	154247108	-	Xaut_3179	-	UspA domain-containing protein
3151	 66.20	0	3525248..3526309	-	353	154247109	-	Xaut_3180	-	hypothetical protein
3152	 71.37	0	3526330..3527286	-	318	154247110	-	Xaut_3181	-	ferredoxin
3153	 70.58	0	3527283..3527870	-	195	154247111	-	Xaut_3182	-	hypothetical protein
3154	 66.31	0	3527882..3529564	-	560	154247112	-	Xaut_3183	-	amino acid permease-associated region
3155	 69.56	0	3529805..3532123	-	772	154247113	-	Xaut_3184	-	glycine cleavage T protein (aminomethyl transferase)
3156	 63.21	-1	3532137..3532685	-	182	154247114	-	Xaut_3185	-	flavin reductase domain-containing protein
3157	 64.43	0	3532793..3534355	-	520	154247115	-	Xaut_3186	-	acyl-CoA dehydrogenase domain-containing protein
3158	 67.73	0	3534582..3535712	+	376	154247116	-	Xaut_3187	-	glycine cleavage T protein (aminomethyl transferase)
3159	 68.58	0	3535760..3536701	-	313	154247117	-	Xaut_3188	-	glyoxalase/bleomycin resistance protein/dioxygenase
3160	 68.15	0	3536968..3538251	+	427	154247118	-	Xaut_3189	-	protein of unknown function DUF900 hydrolase family protein
3161	 68.08	0	3538318..3538953	+	211	154247119	-	Xaut_3190	-	hypothetical protein
3162	 66.67	0	3538950..3539339	+	129	154247120	-	Xaut_3191	-	putative 6-pyruvoyl tetrahydropterin synthase
3163	 67.39	0	3539346..3539897	-	183	154247121	-	Xaut_3192	-	NADPH-dependent FMN reductase
3164	 74.23	+1	3539990..3541126	-	378	154247122	-	Xaut_3193	-	hypothetical protein
3165	 71.03	0	3541129..3542250	-	373	154247123	-	Xaut_3194	-	hypothetical protein
3166	 74.72	+1	3542253..3543518	-	421	154247124	-	Xaut_3195	-	hypothetical protein
3167	 68.02	0	3543518..3544990	-	490	154247125	-	Xaut_3196	-	multicopper oxidase type 2
3168	 62.39	-1	3544998..3546284	-	428	154247126	-	Xaut_3197	-	putative iron-regulated protein
3169	 67.50	0	3546846..3547688	+	280	154247127	-	Xaut_3198	-	iron permease FTR1
3170	 66.26	0	3547806..3548294	+	162	154247128	-	Xaut_3199	-	ModE family transcriptional regulator
3171	 66.67	0	3549396..3550085	-	229	154247129	-	Xaut_3201	-	molybdate ABC transporter, inner membrane subunit
3172	 67.65	0	3550287..3551099	-	270	154247130	-	Xaut_3202	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
3173	 66.29	0	3551326..3551850	-	174	154247131	-	Xaut_3203	-	SNARE associated Golgi protein
3174	 70.36	0	3552116..3553795	+	559	154247132	-	Xaut_3204	-	DEAD/DEAH box helicase domain-containing protein
3175	 64.13	0	3553934..3554209	+	91	154247133	-	Xaut_3205	-	translation initiation factor IF-1
3176	 66.48	0	3554436..3554957	+	173	154247134	-	Xaut_3206	-	hypothetical protein
3177	 59.05	-2	3555231..3555440	-	69	154247135	-	Xaut_3207	-	hypothetical protein
3178	 70.57	0	3555519..3556415	-	298	154247136	-	Xaut_3208	-	serine O-acetyltransferase
3179	 67.86	0	3556495..3557247	-	250	154247137	-	Xaut_3209	-	alpha/beta hydrolase fold
3180	 72.27	+1	3557175..3558548	-	457	154247138	-	Xaut_3210	-	hypothetical protein
3181	 69.14	0	3558740..3559588	+	282	154247139	-	Xaut_3211	-	ABC transporter related
3182	 65.93	0	3559585..3560400	+	271	154247140	-	Xaut_3212	-	binding-protein-dependent transport systems inner membrane component
3183	 64.50	0	3560435..3561451	+	338	154247141	-	Xaut_3213	-	NMT1/THI5-like domain-containing protein
3184	 59.42	-2	3561830..3562036	+	68	154247142	-	Xaut_3214	-	cold-shock DNA-binding domain-containing protein
3185	 66.67	0	3562124..3562717	-	197	154247143	-	Xaut_3215	-	ErfK/YbiS/YcfS/YnhG family protein
3186	 68.20	0	3562892..3563737	-	281	154247144	-	Xaut_3216	-	alpha/beta hydrolase fold
3187	 71.64	+1	3563903..3565189	+	428	154247145	-	Xaut_3217	-	hypothetical protein
3188	 66.47	0	3565732..3566235	+	167	154247146	-	Xaut_3218	-	hypothetical protein
3189	 70.10	0	3566700..3567398	-	232	154247147	-	Xaut_3219	-	phosphoglycolate phosphatase
3190	 71.64	+1	3567591..3568073	+	160	154247148	-	Xaut_3220	-	hypothetical protein
3191	 71.13	0	3568176..3568937	+	253	154247149	-	Xaut_3221	-	ribose 5-phosphate isomerase
3192	 68.86	0	3568961..3569506	+	181	154247150	-	Xaut_3222	-	hypothetical protein
3193	 71.69	+1	3569579..3571768	-	729	154247151	-	Xaut_3223	-	glycosyl transferase family protein
3194	 68.49	0	3571932..3573299	+	455	154247152	-	Xaut_3224	-	glutathione-disulfide reductase
3195	 66.89	0	3573577..3574467	-	296	154247153	-	Xaut_3225	-	hypothetical protein
3196	 67.99	0	3574641..3575927	-	428	154247154	-	Xaut_3226	-	Bcr/CflA subfamily drug resistance transporter
3197	 67.99	0	3576204..3577640	+	478	154247155	-	Xaut_3227	-	phospho-2-dehydro-3-deoxyheptonate aldolase
3198	 67.13	0	3577768..3578844	-	358	154247156	-	Xaut_3228	-	hypothetical protein
3199	 67.72	0	3579006..3580244	-	412	154247157	-	Xaut_3229	-	putative ABC branched-chain amino transporter, periplasmic binding protein
3200	 73.54	+1	3580401..3580895	-	164	154247158	-	Xaut_3230	-	GCN5-related N-acetyltransferase
3201	 74.15	+1	3581141..3582343	-	400	154247159	-	Xaut_3231	-	monooxygenase FAD-binding
3202	 68.22	0	3582389..3582646	-	85	154247160	-	Xaut_3232	-	hypothetical protein
3203	 69.83	0	3583209..3585008	+	599	154247161	-	Xaut_3233	-	ABC transporter related
3204	 71.11	0	3585052..3586785	-	577	154247162	-	Xaut_3234	-	xanthine/uracil/vitamin C permease
3205	 67.39	0	3586979..3587665	-	228	154247163	-	Xaut_3235	-	two component transcriptional regulator
3206	 70.51	0	3587690..3590392	-	900	154247164	-	Xaut_3236	-	osmosensitive K+ channel signal transduction histidine kinase
3207	 71.78	+1	3590477..3591082	-	201	154247165	-	Xaut_3237	-	potassium-transporting ATPase, C subunit
3208	 68.53	0	3591093..3593186	-	697	154247166	-	Xaut_3238	-	K+-transporting ATPase, B subunit
3209	 75.44	+1	3593212..3593382	-	56	154247167	-	Xaut_3239	-	hypothetical protein
3210	 66.14	0	3593384..3595099	-	571	154247168	-	Xaut_3240	-	potassium-transporting ATPase subunit A
3211	 66.01	0	3595215..3595520	+	101	154247169	-	Xaut_3241	-	hypothetical protein
3212	 71.82	+1	3595800..3596168	+	122	154247170	-	Xaut_3242	-	hypothetical protein
3213	 71.93	+1	3596165..3597589	+	474	154247171	-	Xaut_3243	-	amidase
3214	 69.76	0	3597768..3599288	+	506	154247172	-	Xaut_3244	-	AMP-dependent synthetase and ligase
3215	 68.46	0	3599359..3601029	-	556	154247173	-	Xaut_3245	-	glucose-methanol-choline oxidoreductase
3216	 68.24	0	3601149..3602039	+	296	154247174	-	Xaut_3246	-	LysR family transcriptional regulator
3217	 71.30	0	3602029..3602934	-	301	154247175	-	Xaut_3247	-	LysR family transcriptional regulator
3218	 68.76	0	3603036..3604565	+	509	154247176	-	Xaut_3248	-	methylmalonate-semialdehyde dehydrogenase
3219	 65.66	0	3604612..3605010	-	132	154247177	-	Xaut_3249	-	VanZ family protein
3220	 70.23	0	3605478..3607187	+	569	154247178	-	Xaut_3250	-	sulphate transporter
3221	 69.11	0	3607366..3608349	+	327	154247179	-	Xaut_3251	-	phosphate acetyltransferase
3222	 69.55	0	3608352..3609563	+	403	154247180	-	Xaut_3252	-	acetate kinase
3223	 66.18	0	3609635..3611266	+	543	154247181	-	Xaut_3253	-	hypothetical protein
3224	 63.79	0	3611321..3612676	+	451	154247182	-	Xaut_3254	-	transposase IS4 family protein
3225	 67.63	0	3612667..3613596	+	309	154247183	-	Xaut_3255	-	hypothetical protein
3226	 66.55	0	3613593..3614414	+	273	154247184	-	Xaut_3256	-	enoyl-(acyl carrier protein) reductase
3227	 57.14	-2	3614543..3614731	+	62	154247185	-	Xaut_3257	-	hypothetical protein
3228	 69.34	0	3614884..3615519	+	211	154247186	-	Xaut_3258	-	glycosyl transferase family protein
3229	 71.45	0	3615905..3621253	+	1782	154247187	-	Xaut_3259	-	alpha-2-macroglobulin domain-containing protein
3230	 74.18	+1	3621250..3623340	+	696	154247188	-	Xaut_3260	-	penicillin-binding protein 1C
3231	 62.21	-1	3623381..3623896	+	171	154247189	-	Xaut_3261	-	hypothetical protein
3232	 66.23	0	3624210..3624899	-	229	154247190	-	Xaut_3262	-	fumarylacetoacetate (FAA) hydrolase
3233	 69.61	0	3625059..3626042	+	327	154247191	-	Xaut_3263	-	luciferase family protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.