IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3089	 66.23	0	3459252..3459710	+	152	154247047	-	Xaut_3118	-	ribosomal protein S6
3090	 67.04	0	3459710..3459976	+	88	154247048	-	Xaut_3119	-	ribosomal protein S18
3091	 72.94	+1	3460109..3461065	+	318	154247049	-	Xaut_3120	-	hypothetical protein
3092	 68.73	0	3461122..3461703	+	193	154247050	-	Xaut_3121	-	ribosomal protein L9
3093	 66.51	0	3462121..3463386	+	421	154247051	-	Xaut_3122	-	cyclopropane-fatty-acyl-phospholipid synthase
3094	 68.43	0	3463617..3465149	+	510	154247052	-	Xaut_3123	-	inosine-5'-monophosphate dehydrogenase
3095	 65.12	0	3465271..3465723	-	150	154247053	-	Xaut_3124	-	ion transport 2 domain-containing protein
3096	 68.70	0	3465813..3466157	-	114	154247054	-	Xaut_3125	-	hypothetical protein
3097	 71.03	0	3466285..3467796	-	503	154247055	-	Xaut_3126	-	Ppx/GppA phosphatase
3098	 66.12	0	3467807..3469987	-	726	154247056	-	Xaut_3127	-	polyphosphate kinase
3099	 72.24	+1	3470063..3470797	-	244	154247057	-	Xaut_3128	-	chromosomal replication initiator, DnaA
3100	 67.78	0	3470800..3472056	-	418	154247058	-	Xaut_3129	-	hypothetical protein
3101	 65.91	0	3472115..3472645	-	176	154247059	-	Xaut_3130	-	CDP-alcohol phosphatidyltransferase
3102	 68.91	0	3472747..3474036	-	429	154247060	-	Xaut_3131	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3103	 60.76	-1	3474744..3474980	+	78	154247061	-	Xaut_3132	-	acyl carrier protein
3104	 67.38	0	3475090..3476352	+	420	154247062	-	Xaut_3133	-	Beta-ketoacyl synthase
3105	 70.35	0	3476578..3477906	+	442	154247063	-	Xaut_3134	-	aminodeoxychorismate lyase
3106	 72.03	+1	3478090..3479022	+	310	154247064	-	Xaut_3135	-	hypothetical protein
3107	 67.24	0	3479034..3479729	+	231	154247065	-	Xaut_3136	-	guanylate kinase
3108	 68.14	0	3480004..3483126	+	1040	154247066	-	Xaut_3137	-	cell divisionFtsK/SpoIIIE
3109	 69.02	0	3483210..3484358	-	382	154247067	-	Xaut_3138	-	ribonuclease D
3110	 70.41	0	3484414..3486708	-	764	154247068	-	Xaut_3139	-	diguanylate cyclase/phosphodiesterase
3111	 67.15	0	3487005..3488876	+	623	154247069	-	Xaut_3140	-	aspartyl-tRNA synthetase
3112	 64.61	0	3488948..3489433	+	161	154247070	-	Xaut_3141	-	hypothetical protein
3113	 69.77	0	3489598..3491661	-	687	154247071	-	Xaut_3142	-	hypothetical protein
3114	 67.89	0	3491812..3494094	+	760	154247072	-	Xaut_3143	-	malic enzyme
3115	 73.76	+1	3494250..3495137	-	295	154247073	-	Xaut_3144	-	hypothetical protein
3116	 69.24	0	3495161..3496210	+	349	154247074	-	Xaut_3145	-	diguanylate cyclase
3117	 74.29	+1	3496401..3496964	+	187	154247075	-	Xaut_3146	-	hypothetical protein
3118	 74.10	+1	3496987..3498237	+	416	154247076	-	Xaut_3147	-	hypothetical protein
3119	 68.46	0	3498528..3498806	-	92	154247077	-	Xaut_3148	-	hypothetical protein
3120	 70.08	0	3499224..3499721	+	165	154247078	-	Xaut_3149	-	HPP family protein
3121	 71.83	+1	3499795..3500976	+	393	154247079	-	Xaut_3150	-	HK97 family phage portal protein
3122	 55.33	-2	3501059..3501349	+	96	154247080	-	Xaut_3151	-	excinuclease ABC subunit C
3123	 70.51	0	3501556..3501789	+	77	154247081	-	Xaut_3152	-	hypothetical protein
3124	 76.26	+2	3501814..3502011	+	65	154247082	-	Xaut_3153	-	hypothetical protein
3125	 74.58	+1	3502015..3502494	+	159	154247083	-	Xaut_3154	-	HK97 family phage prohead protease
3126	 71.79	+1	3502522..3503808	+	428	154247084	-	Xaut_3155	-	HK97 family phage major capsid protein
3127	 73.71	+1	3504095..3505060	-	321	154247085	-	Xaut_3156	-	lytic transglycosylase catalytic
3128	 74.53	+1	3505063..3505812	-	249	154247086	-	Xaut_3157	-	peptidase S1 and S6 chymotrypsin/Hap
3129	 74.11	+1	3506076..3506639	+	187	154247087	-	Xaut_3158	-	phiE125 gp8 hypothetical protein
3130	 74.45	+1	3506636..3506956	+	106	154247088	-	Xaut_3159	-	phage head-tail adaptor, putative
3131	 74.52	+1	3507237..3507656	+	139	154247089	-	Xaut_3160	-	hypothetical protein
3132	 69.36	0	3507688..3508095	+	135	154247090	-	Xaut_3161	-	TP901-1 family phage major tail protein
3133	 75.07	+1	3508124..3508480	+	118	154247091	-	Xaut_3162	-	gene transfer agent (GTA) like protein
3134	 73.33	+1	3508480..3508689	+	69	154247092	-	Xaut_3163	-	hypothetical protein
3135	 72.25	+1	3508699..3509271	+	190	154247093	-	Xaut_3164	-	gene transfer agent (GTA) orfg11
3136	 75.11	+1	3509300..3509737	-	145	154247094	-	Xaut_3165	-	hypothetical protein
3137	 65.85	0	3510043..3510288	-	81	154247095	-	Xaut_3166	-	hypothetical protein
3138	 72.87	+1	3510451..3511143	-	230	154247096	-	Xaut_3167	-	alginate regulatory protein AlgP
3139	 66.67	0	3511253..3511894	+	213	154247097	-	Xaut_3168	-	hypothetical protein
3140	 69.14	0	3511901..3512791	+	296	154247098	-	Xaut_3169	-	phage protein
3141	 72.11	+1	3512788..3513228	+	146	154247099	-	Xaut_3170	-	NlpC/P60 family phage cell wall peptidase
3142	 71.89	+1	3513260..3517162	+	1300	154247100	-	Xaut_3171	-	gene transfer agent (GTA) orfg15, like protein
3143	 71.65	+1	3517525..3518226	+	233	154247101	-	Xaut_3172	-	hypothetical protein
3144	 73.83	+1	3518260..3518580	+	106	154247102	-	Xaut_3173	-	hypothetical protein
3145	 68.43	0	3518760..3520010	+	416	154247103	-	Xaut_3174	-	hypothetical protein
3146	 75.49	+2	3520049..3520921	+	290	154247104	-	Xaut_3175	-	hypothetical protein
3147	 68.15	0	3521523..3522194	+	223	154247105	-	Xaut_3176	-	two component transcriptional regulator
3148	 70.59	0	3522209..3523636	+	475	154247106	-	Xaut_3177	-	integral membrane sensor signal transduction histidine kinase
3149	 72.60	+1	3523791..3524228	+	145	154247107	-	Xaut_3178	-	LipA a lipoprotein
3150	 68.21	0	3524307..3525146	-	279	154247108	-	Xaut_3179	-	UspA domain-containing protein
3151	 66.20	0	3525248..3526309	-	353	154247109	-	Xaut_3180	-	hypothetical protein
3152	 71.37	0	3526330..3527286	-	318	154247110	-	Xaut_3181	-	ferredoxin
3153	 70.58	0	3527283..3527870	-	195	154247111	-	Xaut_3182	-	hypothetical protein
3154	 66.31	0	3527882..3529564	-	560	154247112	-	Xaut_3183	-	amino acid permease-associated region
3155	 69.56	0	3529805..3532123	-	772	154247113	-	Xaut_3184	-	glycine cleavage T protein (aminomethyl transferase)
3156	 63.21	-1	3532137..3532685	-	182	154247114	-	Xaut_3185	-	flavin reductase domain-containing protein
3157	 64.43	0	3532793..3534355	-	520	154247115	-	Xaut_3186	-	acyl-CoA dehydrogenase domain-containing protein
3158	 67.73	0	3534582..3535712	+	376	154247116	-	Xaut_3187	-	glycine cleavage T protein (aminomethyl transferase)
3159	 68.58	0	3535760..3536701	-	313	154247117	-	Xaut_3188	-	glyoxalase/bleomycin resistance protein/dioxygenase
3160	 68.15	0	3536968..3538251	+	427	154247118	-	Xaut_3189	-	protein of unknown function DUF900 hydrolase family protein
3161	 68.08	0	3538318..3538953	+	211	154247119	-	Xaut_3190	-	hypothetical protein
3162	 66.67	0	3538950..3539339	+	129	154247120	-	Xaut_3191	-	putative 6-pyruvoyl tetrahydropterin synthase
3163	 67.39	0	3539346..3539897	-	183	154247121	-	Xaut_3192	-	NADPH-dependent FMN reductase
3164	 74.23	+1	3539990..3541126	-	378	154247122	-	Xaut_3193	-	hypothetical protein
3165	 71.03	0	3541129..3542250	-	373	154247123	-	Xaut_3194	-	hypothetical protein
3166	 74.72	+1	3542253..3543518	-	421	154247124	-	Xaut_3195	-	hypothetical protein
3167	 68.02	0	3543518..3544990	-	490	154247125	-	Xaut_3196	-	multicopper oxidase type 2
3168	 62.39	-1	3544998..3546284	-	428	154247126	-	Xaut_3197	-	putative iron-regulated protein
3169	 67.50	0	3546846..3547688	+	280	154247127	-	Xaut_3198	-	iron permease FTR1
3170	 66.26	0	3547806..3548294	+	162	154247128	-	Xaut_3199	-	ModE family transcriptional regulator
3171	 66.67	0	3549396..3550085	-	229	154247129	-	Xaut_3201	-	molybdate ABC transporter, inner membrane subunit
3172	 67.65	0	3550287..3551099	-	270	154247130	-	Xaut_3202	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
3173	 66.29	0	3551326..3551850	-	174	154247131	-	Xaut_3203	-	SNARE associated Golgi protein
3174	 70.36	0	3552116..3553795	+	559	154247132	-	Xaut_3204	-	DEAD/DEAH box helicase domain-containing protein
3175	 64.13	0	3553934..3554209	+	91	154247133	-	Xaut_3205	-	translation initiation factor IF-1
3176	 66.48	0	3554436..3554957	+	173	154247134	-	Xaut_3206	-	hypothetical protein
3177	 59.05	-2	3555231..3555440	-	69	154247135	-	Xaut_3207	-	hypothetical protein
3178	 70.57	0	3555519..3556415	-	298	154247136	-	Xaut_3208	-	serine O-acetyltransferase
3179	 67.86	0	3556495..3557247	-	250	154247137	-	Xaut_3209	-	alpha/beta hydrolase fold
3180	 72.27	+1	3557175..3558548	-	457	154247138	-	Xaut_3210	-	hypothetical protein
3181	 69.14	0	3558740..3559588	+	282	154247139	-	Xaut_3211	-	ABC transporter related
3182	 65.93	0	3559585..3560400	+	271	154247140	-	Xaut_3212	-	binding-protein-dependent transport systems inner membrane component
3183	 64.50	0	3560435..3561451	+	338	154247141	-	Xaut_3213	-	NMT1/THI5-like domain-containing protein
3184	 59.42	-2	3561830..3562036	+	68	154247142	-	Xaut_3214	-	cold-shock DNA-binding domain-containing protein
3185	 66.67	0	3562124..3562717	-	197	154247143	-	Xaut_3215	-	ErfK/YbiS/YcfS/YnhG family protein
3186	 68.20	0	3562892..3563737	-	281	154247144	-	Xaut_3216	-	alpha/beta hydrolase fold
3187	 71.64	+1	3563903..3565189	+	428	154247145	-	Xaut_3217	-	hypothetical protein
3188	 66.47	0	3565732..3566235	+	167	154247146	-	Xaut_3218	-	hypothetical protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.