IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3030	 66.06	0	3398493..3399317	-	274	154246988	-	Xaut_3059	-	Tol-Pal system TolQ
3031	 72.79	+1	3399917..3400504	+	195	154246989	-	Xaut_3060	-	5-formyltetrahydrofolate cyclo-ligase
3032	 69.59	0	3400557..3401378	+	273	154246990	-	Xaut_3061	-	metallophosphoesterase
3033	 65.87	0	3401545..3402294	+	249	154246991	-	Xaut_3062	-	hypothetical protein
3034	 70.16	0	3402441..3402869	-	142	154246992	-	Xaut_3063	-	MerR family transcriptional regulator
3035	 73.03	+1	3403288..3405675	+	795	154246993	-	Xaut_3064	-	Sel1 domain-containing protein
3036	 70.39	0	3405731..3406240	+	169	154246994	-	Xaut_3065	-	crossover junction endodeoxyribonuclease RuvC
3037	 68.31	0	3406271..3406696	+	141	154246995	-	Xaut_3066	-	hypothetical protein
3038	 70.06	0	3406724..3407341	+	205	154246996	-	Xaut_3067	-	Holliday junction DNA helicase motor protein
3039	 65.54	0	3407363..3407893	-	176	154246997	-	Xaut_3068	-	flavin reductase domain-containing protein
3040	 69.67	0	3408140..3409171	+	343	154246998	-	Xaut_3069	-	Holliday junction DNA helicase B
3041	 69.50	0	3409225..3409860	+	211	154246999	-	Xaut_3070	-	TetR family transcriptional regulator
3042	 66.22	0	3409921..3410364	+	147	154247000	-	Xaut_3071	-	hypothetical protein
3043	 66.86	0	3410465..3410974	+	169	154247001	-	Xaut_3072	-	Pol-Pal system-associated acyl-CoA thioesterase
3044	 69.27	0	3411008..3411391	-	127	154247002	-	Xaut_3073	-	hypothetical protein
3045	 69.13	0	3412032..3414023	+	663	154247003	-	Xaut_3074	-	transketolase
3046	 66.77	0	3414132..3415142	+	336	154247004	-	Xaut_3075	-	glyceraldehyde-3-phosphate dehydrogenase, type I
3047	 69.19	0	3415163..3416353	+	396	154247005	-	Xaut_3076	-	phosphoglycerate kinase
3048	 66.47	0	3416561..3417586	+	341	154247006	-	Xaut_3077	-	fructose-bisphosphate aldolase
3049	 73.84	+1	3417830..3418456	+	208	154247007	-	Xaut_3078	-	thiamine monophosphate synthase
3050	 69.96	0	3418453..3419607	+	384	154247008	-	Xaut_3079	-	Sel1 domain-containing protein
3051	 67.47	0	3419997..3420491	+	164	154247009	-	Xaut_3080	-	peptidoglycan-associated lipoprotein
3052	 73.16	+1	3420735..3421658	+	307	154247010	-	Xaut_3081	-	Tol-Pal system YbgF
3053	 73.26	+1	3421688..3422794	+	368	154247011	-	Xaut_3082	-	tRNA(Ile)-lysidine synthetase
3054	 67.34	0	3422910..3424832	+	640	154247012	-	Xaut_3083	-	ATP-dependent metalloprotease FtsH
3055	 74.95	+1	3424907..3426499	+	530	154247013	-	Xaut_3084	-	integral membrane protein MviN
3056	 66.38	0	3426733..3427770	+	345	154247014	-	Xaut_3085	-	tryptophanyl-tRNA synthetase
3057	 69.62	0	3427855..3428598	+	247	154247015	-	Xaut_3086	-	ubiquinone biosynthesis O-methyltransferase
3058	 70.88	0	3428626..3429123	-	165	154247016	-	Xaut_3087	-	hypothetical protein
3059	 69.13	0	3429120..3430052	-	310	154247017	-	Xaut_3088	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3060	 62.35	-1	3430147..3430401	-	84	154247018	-	Xaut_3089	-	glutaredoxin 3
3061	 72.27	+1	3430469..3431236	-	255	154247019	-	Xaut_3090	-	phosphoribosyltransferase
3062	 69.31	0	3431291..3433897	-	868	154247020	-	Xaut_3091	-	copper-translocating P-type ATPase
3063	 66.67	0	3434044..3434319	+	91	154247021	-	Xaut_3092	-	hypothetical protein
3064	 71.01	0	3434433..3434984	-	183	154247022	-	Xaut_3093	-	putative methyltransferase
3065	 73.38	+1	3435003..3436865	-	620	154247023	-	Xaut_3094	-	RNA-binding S4 domain-containing protein
3066	 68.47	0	3436923..3437366	+	147	154247024	-	Xaut_3095	-	CMP/dCMP deaminase zinc-binding
3067	 61.39	-1	3437393..3437809	-	138	154247025	-	Xaut_3096	-	hypothetical protein
3068	 69.54	0	3437999..3438904	-	301	154247026	-	Xaut_3097	-	alpha/beta hydrolase fold
3069	 72.37	+1	3438965..3439894	-	309	154247027	-	Xaut_3098	-	penicillin-insensitive murein endopeptidase
3070	 70.76	0	3439894..3440943	-	349	154247028	-	Xaut_3099	-	hypothetical protein
3071	 69.47	0	3441043..3441756	-	237	154247029	-	Xaut_3100	-	sugar fermentation stimulation protein
3072	 69.12	0	3441756..3442244	-	162	154247030	-	Xaut_3101	-	thioesterase superfamily protein
3073	 63.94	0	3442488..3442817	+	109	154247031	-	Xaut_3102	-	small multidrug resistance protein
3074	 66.35	0	3442878..3443504	-	208	154247032	-	Xaut_3103	-	GCN5-related N-acetyltransferase
3075	 69.85	0	3443752..3445008	-	418	154247033	-	Xaut_3104	-	hydroxypyruvate reductase
3076	 73.50	+1	3445194..3446129	+	311	154247034	-	Xaut_3105	-	methyltransferase type 11
3077	 66.88	0	3446243..3446713	+	156	154247035	-	Xaut_3106	-	thioesterase superfamily protein
3078	 65.84	0	3446798..3447520	-	240	154247036	-	Xaut_3107	-	acetoacetyl-CoA reductase
3079	 68.96	0	3447758..3448936	-	392	154247037	-	Xaut_3108	-	acetyl-CoA acetyltransferase
3080	 59.62	-1	3449234..3449872	+	212	154247038	-	Xaut_3109	-	polyhydroxyalkonate synthesis repressor, PhaR
3081	 59.45	-2	3450161..3450562	-	133	154247039	-	Xaut_3110	-	putative transmembrane protein
3082	 66.13	0	3450953..3451138	-	61	154247040	-	Xaut_3111	-	ribosomal protein L32
3083	 68.04	0	3451404..3452420	+	338	154247041	-	Xaut_3112	-	PpiC-type peptidyl-prolyl cis-trans isomerase
3084	 70.24	0	3452507..3452926	-	139	154247042	-	Xaut_3113	-	hypothetical protein
3085	 70.16	0	3453123..3455639	-	838	154247043	-	Xaut_3114	-	hypothetical protein
3086	 68.82	0	3455739..3456482	-	247	154247044	-	Xaut_3115	-	3-oxoacyl-(acyl-carrier-protein) reductase
3087	 71.53	+1	3456764..3457750	-	328	154247045	-	Xaut_3116	-	malonyl CoA-acyl carrier protein transacylase
3088	 67.53	0	3457830..3458993	+	387	154247046	-	Xaut_3117	-	polysaccharide deacetylase
3089	 66.23	0	3459252..3459710	+	152	154247047	-	Xaut_3118	-	ribosomal protein S6
3090	 67.04	0	3459710..3459976	+	88	154247048	-	Xaut_3119	-	ribosomal protein S18
3091	 72.94	+1	3460109..3461065	+	318	154247049	-	Xaut_3120	-	hypothetical protein
3092	 68.73	0	3461122..3461703	+	193	154247050	-	Xaut_3121	-	ribosomal protein L9
3093	 66.51	0	3462121..3463386	+	421	154247051	-	Xaut_3122	-	cyclopropane-fatty-acyl-phospholipid synthase
3094	 68.43	0	3463617..3465149	+	510	154247052	-	Xaut_3123	-	inosine-5'-monophosphate dehydrogenase
3095	 65.12	0	3465271..3465723	-	150	154247053	-	Xaut_3124	-	ion transport 2 domain-containing protein
3096	 68.70	0	3465813..3466157	-	114	154247054	-	Xaut_3125	-	hypothetical protein
3097	 71.03	0	3466285..3467796	-	503	154247055	-	Xaut_3126	-	Ppx/GppA phosphatase
3098	 66.12	0	3467807..3469987	-	726	154247056	-	Xaut_3127	-	polyphosphate kinase
3099	 72.24	+1	3470063..3470797	-	244	154247057	-	Xaut_3128	-	chromosomal replication initiator, DnaA
3100	 67.78	0	3470800..3472056	-	418	154247058	-	Xaut_3129	-	hypothetical protein
3101	 65.91	0	3472115..3472645	-	176	154247059	-	Xaut_3130	-	CDP-alcohol phosphatidyltransferase
3102	 68.91	0	3472747..3474036	-	429	154247060	-	Xaut_3131	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3103	 60.76	-1	3474744..3474980	+	78	154247061	-	Xaut_3132	-	acyl carrier protein
3104	 67.38	0	3475090..3476352	+	420	154247062	-	Xaut_3133	-	Beta-ketoacyl synthase
3105	 70.35	0	3476578..3477906	+	442	154247063	-	Xaut_3134	-	aminodeoxychorismate lyase
3106	 72.03	+1	3478090..3479022	+	310	154247064	-	Xaut_3135	-	hypothetical protein
3107	 67.24	0	3479034..3479729	+	231	154247065	-	Xaut_3136	-	guanylate kinase
3108	 68.14	0	3480004..3483126	+	1040	154247066	-	Xaut_3137	-	cell divisionFtsK/SpoIIIE
3109	 69.02	0	3483210..3484358	-	382	154247067	-	Xaut_3138	-	ribonuclease D
3110	 70.41	0	3484414..3486708	-	764	154247068	-	Xaut_3139	-	diguanylate cyclase/phosphodiesterase
3111	 67.15	0	3487005..3488876	+	623	154247069	-	Xaut_3140	-	aspartyl-tRNA synthetase
3112	 64.61	0	3488948..3489433	+	161	154247070	-	Xaut_3141	-	hypothetical protein
3113	 69.77	0	3489598..3491661	-	687	154247071	-	Xaut_3142	-	hypothetical protein
3114	 67.89	0	3491812..3494094	+	760	154247072	-	Xaut_3143	-	malic enzyme
3115	 73.76	+1	3494250..3495137	-	295	154247073	-	Xaut_3144	-	hypothetical protein
3116	 69.24	0	3495161..3496210	+	349	154247074	-	Xaut_3145	-	diguanylate cyclase
3117	 74.29	+1	3496401..3496964	+	187	154247075	-	Xaut_3146	-	hypothetical protein
3118	 74.10	+1	3496987..3498237	+	416	154247076	-	Xaut_3147	-	hypothetical protein
3119	 68.46	0	3498528..3498806	-	92	154247077	-	Xaut_3148	-	hypothetical protein
3120	 70.08	0	3499224..3499721	+	165	154247078	-	Xaut_3149	-	HPP family protein
3121	 71.83	+1	3499795..3500976	+	393	154247079	-	Xaut_3150	-	HK97 family phage portal protein
3122	 55.33	-2	3501059..3501349	+	96	154247080	-	Xaut_3151	-	excinuclease ABC subunit C
3123	 70.51	0	3501556..3501789	+	77	154247081	-	Xaut_3152	-	hypothetical protein
3124	 76.26	+2	3501814..3502011	+	65	154247082	-	Xaut_3153	-	hypothetical protein
3125	 74.58	+1	3502015..3502494	+	159	154247083	-	Xaut_3154	-	HK97 family phage prohead protease
3126	 71.79	+1	3502522..3503808	+	428	154247084	-	Xaut_3155	-	HK97 family phage major capsid protein
3127	 73.71	+1	3504095..3505060	-	321	154247085	-	Xaut_3156	-	lytic transglycosylase catalytic
3128	 74.53	+1	3505063..3505812	-	249	154247086	-	Xaut_3157	-	peptidase S1 and S6 chymotrypsin/Hap
3129	 74.11	+1	3506076..3506639	+	187	154247087	-	Xaut_3158	-	phiE125 gp8 hypothetical protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.