IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.51   STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2986	 64.97	0	3352589..3353764	-	391	154246944	-	Xaut_3015	-	replication protein A
2987	 70.21	0	3353742..3354023	-	93	154246945	-	Xaut_3016	-	putative transcriptional regulator
2988	 65.36	0	3354163..3354696	-	177	154246946	-	Xaut_3017	-	hypothetical protein
2989	 65.33	0	3354713..3354937	-	74	154246947	-	Xaut_3018	-	hypothetical protein
2990	 63.30	-1	3355049..3355315	-	88	154246948	-	Xaut_3019	-	hypothetical protein
2991	 62.75	-1	3355398..3355652	-	84	154246949	-	Xaut_3020	-	XRE family transcriptional regulator
2992	 67.28	0	3355838..3356161	-	107	154246950	-	Xaut_3021	-	hypothetical protein
2993	 70.07	0	3356732..3357172	-	146	154246951	-	Xaut_3022	-	hypothetical protein
2994	 64.29	0	3357315..3357482	-	55	154246952	-	Xaut_3023	-	hypothetical protein
2995	 63.75	0	3357765..3358691	-	308	154246953	-	Xaut_3024	-	hypothetical protein
2996	 68.09	0	3359018..3360073	-	351	154246954	-	Xaut_3025	-	hypothetical protein
2997	 68.78	0	3360073..3364416	-	1447	154246955	-	Xaut_3026	-	methylase/helicase
2998	 66.33	0	3364570..3364866	-	98	154246956	-	Xaut_3027	-	hypothetical protein
2999	 67.42	0	3364863..3365126	-	87	154246957	-	Xaut_3028	-	hypothetical protein
3000	 65.95	0	3365123..3365539	-	138	154246958	-	Xaut_3029	-	hypothetical protein
3001	 65.77	0	3365606..3365827	-	73	154246959	-	Xaut_3030	-	hypothetical protein
3002	 69.14	0	3365888..3368026	-	712	154246960	-	Xaut_3031	-	nuclease
3003	 67.93	0	3368187..3369134	-	315	154246961	-	Xaut_3032	-	hypothetical protein
3004	 69.86	0	3369134..3369352	-	72	154246962	-	Xaut_3033	-	hypothetical protein
3005	 63.46	-1	3369409..3370311	-	300	154246963	-	Xaut_3034	-	hypothetical protein
3006	 62.76	-1	3370630..3372804	-	724	154246964	-	Xaut_3035	-	phage integrase family protein
3007	 62.36	-1	3372801..3374588	-	595	154246965	-	Xaut_3036	-	hypothetical protein
3008	 62.01	-1	3374585..3375979	-	464	154246966	-	Xaut_3037	-	integrase domain-containing protein
3009	 68.27	0	3376167..3376913	-	248	154246967	-	Xaut_3038	-	hypothetical protein
3010	 60.34	-1	3377071..3378492	-	473	154246968	-	Xaut_3039	-	transposase IS4 family protein
3011	 61.78	-1	3378659..3379108	-	149	154246969	-	Xaut_3040	-	BadM/Rrf2 family transcriptional regulator
3012	 63.80	0	3379189..3379641	+	150	154246970	-	Xaut_3041	-	truncated hemoglobin-like protein
3013	 64.97	0	3379638..3379931	+	97	154246971	-	Xaut_3042	-	hypothetical protein
3014	 60.87	-1	3379906..3380388	+	160	154246972	-	Xaut_3043	-	hypothetical protein
3015	 61.76	-1	3380407..3382710	+	767	154246973	-	Xaut_3044	-	putative nitric-oxide reductase
3016	 69.51	0	3382986..3383582	+	198	154246974	-	Xaut_3045	-	hypothetical protein
3017	 66.37	0	3383575..3384591	+	338	154246975	-	Xaut_3046	-	hypothetical protein
3018	 58.99	-2	3384604..3386400	+	598	154246976	-	Xaut_3047	-	ATP-dependent endonuclease family protein
3019	 58.07	-2	3386410..3388236	+	608	154246977	-	Xaut_3048	-	UvrD/REP helicase
3020	 61.43	-1	3388259..3389155	+	298	154246978	-	Xaut_3049	-	DNA polymerase III subunit epsilon
3021	 66.43	0	3389174..3389587	-	137	154246979	-	Xaut_3050	-	hypothetical protein
3022	 61.11	-1	3389640..3390881	-	413	154246980	-	Xaut_3051	-	integrase family protein
3023	 67.14	0	3391001..3391630	-	209	154246981	-	Xaut_3052	-	DNA repair protein RadC
3024	 67.15	0	3391650..3392477	-	275	154246982	-	Xaut_3053	-	methionine aminopeptidase, type I
3025	 73.19	+1	3392606..3394537	+	643	154246983	-	Xaut_3054	-	DNA mismatch repair protein
3026	 68.44	0	3394609..3395397	-	262	154246984	-	Xaut_3055	-	inositol-phosphate phosphatase
3027	 68.51	0	3395637..3396989	-	450	154246985	-	Xaut_3056	-	beta-propeller repeat-containing to-pal system protein TolB
3028	 68.66	0	3397070..3398023	-	317	154246986	-	Xaut_3057	-	putative TolA
3029	 65.14	0	3398031..3398489	-	152	154246987	-	Xaut_3058	-	biopolymer transport TolR
3030	 66.06	0	3398493..3399317	-	274	154246988	-	Xaut_3059	-	Tol-Pal system TolQ
3031	 72.79	+1	3399917..3400504	+	195	154246989	-	Xaut_3060	-	5-formyltetrahydrofolate cyclo-ligase
3032	 69.59	0	3400557..3401378	+	273	154246990	-	Xaut_3061	-	metallophosphoesterase
3033	 65.87	0	3401545..3402294	+	249	154246991	-	Xaut_3062	-	hypothetical protein
3034	 70.16	0	3402441..3402869	-	142	154246992	-	Xaut_3063	-	MerR family transcriptional regulator
3035	 73.03	+1	3403288..3405675	+	795	154246993	-	Xaut_3064	-	Sel1 domain-containing protein
3036	 70.39	0	3405731..3406240	+	169	154246994	-	Xaut_3065	-	crossover junction endodeoxyribonuclease RuvC
3037	 68.31	0	3406271..3406696	+	141	154246995	-	Xaut_3066	-	hypothetical protein
3038	 70.06	0	3406724..3407341	+	205	154246996	-	Xaut_3067	-	Holliday junction DNA helicase motor protein
3039	 65.54	0	3407363..3407893	-	176	154246997	-	Xaut_3068	-	flavin reductase domain-containing protein
3040	 69.67	0	3408140..3409171	+	343	154246998	-	Xaut_3069	-	Holliday junction DNA helicase B
3041	 69.50	0	3409225..3409860	+	211	154246999	-	Xaut_3070	-	TetR family transcriptional regulator
3042	 66.22	0	3409921..3410364	+	147	154247000	-	Xaut_3071	-	hypothetical protein
3043	 66.86	0	3410465..3410974	+	169	154247001	-	Xaut_3072	-	Pol-Pal system-associated acyl-CoA thioesterase
3044	 69.27	0	3411008..3411391	-	127	154247002	-	Xaut_3073	-	hypothetical protein
3045	 69.13	0	3412032..3414023	+	663	154247003	-	Xaut_3074	-	transketolase
3046	 66.77	0	3414132..3415142	+	336	154247004	-	Xaut_3075	-	glyceraldehyde-3-phosphate dehydrogenase, type I
3047	 69.19	0	3415163..3416353	+	396	154247005	-	Xaut_3076	-	phosphoglycerate kinase
3048	 66.47	0	3416561..3417586	+	341	154247006	-	Xaut_3077	-	fructose-bisphosphate aldolase
3049	 73.84	+1	3417830..3418456	+	208	154247007	-	Xaut_3078	-	thiamine monophosphate synthase
3050	 69.96	0	3418453..3419607	+	384	154247008	-	Xaut_3079	-	Sel1 domain-containing protein
3051	 67.47	0	3419997..3420491	+	164	154247009	-	Xaut_3080	-	peptidoglycan-associated lipoprotein
3052	 73.16	+1	3420735..3421658	+	307	154247010	-	Xaut_3081	-	Tol-Pal system YbgF
3053	 73.26	+1	3421688..3422794	+	368	154247011	-	Xaut_3082	-	tRNA(Ile)-lysidine synthetase
3054	 67.34	0	3422910..3424832	+	640	154247012	-	Xaut_3083	-	ATP-dependent metalloprotease FtsH
3055	 74.95	+1	3424907..3426499	+	530	154247013	-	Xaut_3084	-	integral membrane protein MviN
3056	 66.38	0	3426733..3427770	+	345	154247014	-	Xaut_3085	-	tryptophanyl-tRNA synthetase
3057	 69.62	0	3427855..3428598	+	247	154247015	-	Xaut_3086	-	ubiquinone biosynthesis O-methyltransferase
3058	 70.88	0	3428626..3429123	-	165	154247016	-	Xaut_3087	-	hypothetical protein
3059	 69.13	0	3429120..3430052	-	310	154247017	-	Xaut_3088	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3060	 62.35	-1	3430147..3430401	-	84	154247018	-	Xaut_3089	-	glutaredoxin 3
3061	 72.27	+1	3430469..3431236	-	255	154247019	-	Xaut_3090	-	phosphoribosyltransferase
3062	 69.31	0	3431291..3433897	-	868	154247020	-	Xaut_3091	-	copper-translocating P-type ATPase
3063	 66.67	0	3434044..3434319	+	91	154247021	-	Xaut_3092	-	hypothetical protein
3064	 71.01	0	3434433..3434984	-	183	154247022	-	Xaut_3093	-	putative methyltransferase
3065	 73.38	+1	3435003..3436865	-	620	154247023	-	Xaut_3094	-	RNA-binding S4 domain-containing protein
3066	 68.47	0	3436923..3437366	+	147	154247024	-	Xaut_3095	-	CMP/dCMP deaminase zinc-binding
3067	 61.39	-1	3437393..3437809	-	138	154247025	-	Xaut_3096	-	hypothetical protein
3068	 69.54	0	3437999..3438904	-	301	154247026	-	Xaut_3097	-	alpha/beta hydrolase fold
3069	 72.37	+1	3438965..3439894	-	309	154247027	-	Xaut_3098	-	penicillin-insensitive murein endopeptidase
3070	 70.76	0	3439894..3440943	-	349	154247028	-	Xaut_3099	-	hypothetical protein
3071	 69.47	0	3441043..3441756	-	237	154247029	-	Xaut_3100	-	sugar fermentation stimulation protein
3072	 69.12	0	3441756..3442244	-	162	154247030	-	Xaut_3101	-	thioesterase superfamily protein
3073	 63.94	0	3442488..3442817	+	109	154247031	-	Xaut_3102	-	small multidrug resistance protein
3074	 66.35	0	3442878..3443504	-	208	154247032	-	Xaut_3103	-	GCN5-related N-acetyltransferase
3075	 69.85	0	3443752..3445008	-	418	154247033	-	Xaut_3104	-	hydroxypyruvate reductase
3076	 73.50	+1	3445194..3446129	+	311	154247034	-	Xaut_3105	-	methyltransferase type 11
3077	 66.88	0	3446243..3446713	+	156	154247035	-	Xaut_3106	-	thioesterase superfamily protein
3078	 65.84	0	3446798..3447520	-	240	154247036	-	Xaut_3107	-	acetoacetyl-CoA reductase
3079	 68.96	0	3447758..3448936	-	392	154247037	-	Xaut_3108	-	acetyl-CoA acetyltransferase
3080	 59.62	-1	3449234..3449872	+	212	154247038	-	Xaut_3109	-	polyhydroxyalkonate synthesis repressor, PhaR
3081	 59.45	-2	3450161..3450562	-	133	154247039	-	Xaut_3110	-	putative transmembrane protein
3082	 66.13	0	3450953..3451138	-	61	154247040	-	Xaut_3111	-	ribosomal protein L32
3083	 68.04	0	3451404..3452420	+	338	154247041	-	Xaut_3112	-	PpiC-type peptidyl-prolyl cis-trans isomerase
3084	 70.24	0	3452507..3452926	-	139	154247042	-	Xaut_3113	-	hypothetical protein
3085	 70.16	0	3453123..3455639	-	838	154247043	-	Xaut_3114	-	hypothetical protein
67.51	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.