IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.51   STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2936	 57.94	-2	3286709..3287029	-	106	154246894	-	Xaut_2961	-	DNA repair protein RadC
2937	 62.18	-1	3287114..3287626	-	170	154246895	-	Xaut_2962	-	DNA topoisomerase type IA Zn finger domain-containing protein
2938	 56.11	-2	3287662..3287964	+	100	154246896	-	Xaut_2963	-	hypothetical protein
2939	 58.79	-2	3288455..3289330	+	291	154246897	-	Xaut_2965	-	LysR family transcriptional regulator
2940	 57.27	-2	3289482..3289928	+	148	154246898	-	Xaut_2966	-	methionine sulfoxide reductase B
2941	 60.23	-1	3289928..3290440	+	170	154246899	-	Xaut_2967	-	methionine sulfoxide reductase A
2942	 56.03	-2	3290491..3290979	+	162	154246900	-	Xaut_2968	-	hypothetical protein
2943	 59.94	-1	3291150..3291818	-	222	154246901	-	Xaut_2969	-	TetR family transcriptional regulator
2944	 64.53	0	3292252..3293466	+	404	154246902	-	Xaut_2970	-	NADH:flavin oxidoreductase/NADH oxidase
2945	 56.05	-2	3294465..3295340	-	291	154246903	-	Xaut_2972	-	diguanylate cyclase with PAS/PAC sensor
2946	 58.25	-2	3295412..3295720	-	102	154246904	-	Xaut_2973	-	regulatory protein, TetR
2947	 63.96	0	3295918..3296877	+	319	154246905	-	Xaut_2974	-	hypothetical protein
2948	 61.70	-1	3296874..3297578	+	234	154246906	-	Xaut_2975	-	glutathione S-transferase domain-containing protein
2949	 60.79	-1	3297609..3298493	+	294	154246907	-	Xaut_2976	-	glutathione S-transferase domain-containing protein
2950	 63.57	0	3298490..3299296	+	268	154246908	-	Xaut_2977	-	short-chain dehydrogenase/reductase SDR
2951	 60.17	-1	3299331..3299807	+	158	154246909	-	Xaut_2978	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2952	 53.68	-2	3300472..3300702	-	76	154246910	-	Xaut_2980	-	hypothetical protein
2953	 60.58	-1	3301022..3304030	-	1002	154246911	-	Xaut_2981	-	helicase domain-containing protein
2954	 62.74	-1	3304027..3305835	-	602	154246912	-	Xaut_2982	-	hypothetical protein
2955	 63.22	-1	3305832..3307049	-	405	154246913	-	Xaut_2983	-	hypothetical protein
2956	 61.97	-1	3307111..3310452	-	1113	154246914	-	Xaut_2984	-	type III restriction protein res subunit
2957	 67.23	0	3310467..3313862	-	1131	154246915	-	Xaut_2985	-	UvrD/REP helicase
2958	 68.14	0	3313859..3316513	-	884	154246916	-	Xaut_2986	-	hypothetical protein
2959	 58.87	-2	3316735..3317619	+	294	154246917	-	Xaut_2987	-	hypothetical protein
2960	 63.13	-1	3317642..3321145	+	1167	154246918	-	Xaut_2988	-	helicase domain-containing protein
2961	 62.80	-1	3321154..3321645	+	163	154246919	-	Xaut_2989	-	hypothetical protein
2962	 64.63	0	3321642..3325862	+	1406	154246920	-	Xaut_2990	-	putative ATPase
2963	 58.85	-2	3325846..3328647	+	933	154246921	-	Xaut_2991	-	hypothetical protein
2964	 62.72	-1	3328660..3331956	+	1098	154246922	-	Xaut_2992	-	hypothetical protein
2965	 60.00	-1	3332074..3333033	+	319	154246923	-	Xaut_2993	-	LysR family transcriptional regulator
2966	 68.50	0	3333207..3334463	-	418	154246924	-	Xaut_2995	-	conjugation TrbI family protein
2967	 65.61	0	3334460..3335503	-	347	154246925	-	Xaut_2996	-	P-type conjugative transfer protein TrbG
2968	 65.79	0	3335500..3336183	-	227	154246926	-	Xaut_2997	-	conjugal transfer protein
2969	 68.14	0	3336186..3337541	-	451	154246927	-	Xaut_2998	-	P-type conjugative transfer protein TrbL
2970	 69.62	0	3337544..3337915	-	123	154246928	-	Xaut_2999	-	hypothetical protein
2971	 64.95	0	3337926..3338684	-	252	154246929	-	Xaut_3000	-	P-type conjugative transfer protein TrbJ
2972	 66.05	0	3338681..3341119	-	812	154246930	-	Xaut_3001	-	AAA ATPase
2973	 69.96	0	3341133..3341405	-	90	154246931	-	Xaut_3002	-	conjugal transfer protein TrbB
2974	 63.96	0	3341405..3341737	-	110	154246932	-	Xaut_3003	-	conjugal transfer protein TrbC
2975	 70.36	0	3341734..3342762	-	342	154246933	-	Xaut_3004	-	P-type conjugative transfer ATPase TrbB
2976	 62.79	-1	3342932..3343369	-	145	154246934	-	Xaut_3005	-	CopG/DNA-binding domain-containing protein
2977	 64.31	0	3343381..3345372	-	663	154246935	-	Xaut_3006	-	TRAG family protein
2978	 66.34	0	3345576..3347699	-	707	154246936	-	Xaut_3007	-	hypothetical protein
2979	 66.76	0	3348206..3349294	-	362	154246937	-	Xaut_3008	-	transposase IS116/IS110/IS902 family protein
2980	 65.27	0	3349505..3350221	-	238	154246938	-	Xaut_3009	-	lytic transglycosylase catalytic
2981	 64.58	0	3350226..3350561	-	111	154246939	-	Xaut_3010	-	hypothetical protein
2982	 67.95	0	3350628..3351173	-	181	154246940	-	Xaut_3011	-	conjugal transfer protein precursor
2983	 66.67	0	3351170..3351691	-	173	154246941	-	Xaut_3012	-	hypothetical protein
2984	 68.63	0	3351688..3351942	-	84	154246942	-	Xaut_3013	-	hypothetical protein
2985	 70.64	0	3351939..3352592	-	217	154246943	-	Xaut_3014	-	cobyrinic acid ac-diamide synthase
2986	 64.97	0	3352589..3353764	-	391	154246944	-	Xaut_3015	-	replication protein A
2987	 70.21	0	3353742..3354023	-	93	154246945	-	Xaut_3016	-	putative transcriptional regulator
2988	 65.36	0	3354163..3354696	-	177	154246946	-	Xaut_3017	-	hypothetical protein
2989	 65.33	0	3354713..3354937	-	74	154246947	-	Xaut_3018	-	hypothetical protein
2990	 63.30	-1	3355049..3355315	-	88	154246948	-	Xaut_3019	-	hypothetical protein
2991	 62.75	-1	3355398..3355652	-	84	154246949	-	Xaut_3020	-	XRE family transcriptional regulator
2992	 67.28	0	3355838..3356161	-	107	154246950	-	Xaut_3021	-	hypothetical protein
2993	 70.07	0	3356732..3357172	-	146	154246951	-	Xaut_3022	-	hypothetical protein
2994	 64.29	0	3357315..3357482	-	55	154246952	-	Xaut_3023	-	hypothetical protein
2995	 63.75	0	3357765..3358691	-	308	154246953	-	Xaut_3024	-	hypothetical protein
2996	 68.09	0	3359018..3360073	-	351	154246954	-	Xaut_3025	-	hypothetical protein
2997	 68.78	0	3360073..3364416	-	1447	154246955	-	Xaut_3026	-	methylase/helicase
2998	 66.33	0	3364570..3364866	-	98	154246956	-	Xaut_3027	-	hypothetical protein
2999	 67.42	0	3364863..3365126	-	87	154246957	-	Xaut_3028	-	hypothetical protein
3000	 65.95	0	3365123..3365539	-	138	154246958	-	Xaut_3029	-	hypothetical protein
3001	 65.77	0	3365606..3365827	-	73	154246959	-	Xaut_3030	-	hypothetical protein
3002	 69.14	0	3365888..3368026	-	712	154246960	-	Xaut_3031	-	nuclease
3003	 67.93	0	3368187..3369134	-	315	154246961	-	Xaut_3032	-	hypothetical protein
3004	 69.86	0	3369134..3369352	-	72	154246962	-	Xaut_3033	-	hypothetical protein
3005	 63.46	-1	3369409..3370311	-	300	154246963	-	Xaut_3034	-	hypothetical protein
3006	 62.76	-1	3370630..3372804	-	724	154246964	-	Xaut_3035	-	phage integrase family protein
3007	 62.36	-1	3372801..3374588	-	595	154246965	-	Xaut_3036	-	hypothetical protein
3008	 62.01	-1	3374585..3375979	-	464	154246966	-	Xaut_3037	-	integrase domain-containing protein
3009	 68.27	0	3376167..3376913	-	248	154246967	-	Xaut_3038	-	hypothetical protein
3010	 60.34	-1	3377071..3378492	-	473	154246968	-	Xaut_3039	-	transposase IS4 family protein
3011	 61.78	-1	3378659..3379108	-	149	154246969	-	Xaut_3040	-	BadM/Rrf2 family transcriptional regulator
3012	 63.80	0	3379189..3379641	+	150	154246970	-	Xaut_3041	-	truncated hemoglobin-like protein
3013	 64.97	0	3379638..3379931	+	97	154246971	-	Xaut_3042	-	hypothetical protein
3014	 60.87	-1	3379906..3380388	+	160	154246972	-	Xaut_3043	-	hypothetical protein
3015	 61.76	-1	3380407..3382710	+	767	154246973	-	Xaut_3044	-	putative nitric-oxide reductase
3016	 69.51	0	3382986..3383582	+	198	154246974	-	Xaut_3045	-	hypothetical protein
3017	 66.37	0	3383575..3384591	+	338	154246975	-	Xaut_3046	-	hypothetical protein
3018	 58.99	-2	3384604..3386400	+	598	154246976	-	Xaut_3047	-	ATP-dependent endonuclease family protein
3019	 58.07	-2	3386410..3388236	+	608	154246977	-	Xaut_3048	-	UvrD/REP helicase
3020	 61.43	-1	3388259..3389155	+	298	154246978	-	Xaut_3049	-	DNA polymerase III subunit epsilon
3021	 66.43	0	3389174..3389587	-	137	154246979	-	Xaut_3050	-	hypothetical protein
3022	 61.11	-1	3389640..3390881	-	413	154246980	-	Xaut_3051	-	integrase family protein
3023	 67.14	0	3391001..3391630	-	209	154246981	-	Xaut_3052	-	DNA repair protein RadC
3024	 67.15	0	3391650..3392477	-	275	154246982	-	Xaut_3053	-	methionine aminopeptidase, type I
3025	 73.19	+1	3392606..3394537	+	643	154246983	-	Xaut_3054	-	DNA mismatch repair protein
3026	 68.44	0	3394609..3395397	-	262	154246984	-	Xaut_3055	-	inositol-phosphate phosphatase
3027	 68.51	0	3395637..3396989	-	450	154246985	-	Xaut_3056	-	beta-propeller repeat-containing to-pal system protein TolB
3028	 68.66	0	3397070..3398023	-	317	154246986	-	Xaut_3057	-	putative TolA
3029	 65.14	0	3398031..3398489	-	152	154246987	-	Xaut_3058	-	biopolymer transport TolR
3030	 66.06	0	3398493..3399317	-	274	154246988	-	Xaut_3059	-	Tol-Pal system TolQ
3031	 72.79	+1	3399917..3400504	+	195	154246989	-	Xaut_3060	-	5-formyltetrahydrofolate cyclo-ligase
3032	 69.59	0	3400557..3401378	+	273	154246990	-	Xaut_3061	-	metallophosphoesterase
3033	 65.87	0	3401545..3402294	+	249	154246991	-	Xaut_3062	-	hypothetical protein
3034	 70.16	0	3402441..3402869	-	142	154246992	-	Xaut_3063	-	MerR family transcriptional regulator
3035	 73.03	+1	3403288..3405675	+	795	154246993	-	Xaut_3064	-	Sel1 domain-containing protein
67.51	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.