IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2827	 69.82	0	3175221..3177029	+	602	154246785	-	Xaut_2846	-	integral membrane sensor signal transduction histidine kinase
2828	 67.11	0	3177033..3177482	+	149	154246786	-	Xaut_2847	-	HPr kinase
2829	 62.94	-1	3177591..3177992	+	133	154246787	-	Xaut_2848	-	PTS system fructose subfamily IIA component
2830	 69.55	0	3177973..3178353	+	126	154246788	-	Xaut_2849	-	phosphotransferase system, phosphocarrier protein HPr
2831	 70.32	0	3178471..3180030	+	519	154246789	-	Xaut_2850	-	integral membrane sensor signal transduction histidine kinase
2832	 62.37	-1	3180242..3181939	-	565	154246790	-	Xaut_2851	-	resolvase domain-containing protein
2833	 66.67	0	3181936..3182457	-	173	154246791	-	Xaut_2852	-	hypothetical protein
2834	 65.36	0	3182460..3182765	-	101	154246792	-	Xaut_2853	-	hypothetical protein
2835	 65.83	0	3182845..3183084	-	79	154246793	-	Xaut_2854	-	hypothetical protein
2836	 66.30	0	3183246..3183521	+	91	154246794	-	Xaut_2855	-	hypothetical protein
2837	 65.37	0	3183533..3184459	+	308	154246795	-	Xaut_2856	-	cation diffusion facilitator family transporter
2838	 66.25	0	3184596..3185807	+	403	154246796	-	Xaut_2857	-	hypothetical protein
2839	 66.67	0	3185956..3188085	+	709	154246797	-	Xaut_2858	-	nuclease
2840	 65.42	0	3188155..3189198	+	347	154246798	-	Xaut_2859	-	hypothetical protein
2841	 64.19	0	3189517..3190443	+	308	154246799	-	Xaut_2860	-	hypothetical protein
2842	 66.89	0	3190592..3191032	+	146	154246800	-	Xaut_2861	-	hypothetical protein
2843	 65.14	0	3191619..3191945	+	108	154246801	-	Xaut_2862	-	hypothetical protein
2844	 58.55	-2	3192104..3192448	+	114	154246802	-	Xaut_2863	-	hypothetical protein
2845	 64.86	0	3192985..3193260	+	91	154246803	-	Xaut_2865	-	hypothetical protein
2846	 66.39	0	3193458..3194171	+	237	154246804	-	Xaut_2866	-	hypothetical protein
2847	 65.99	0	3194322..3194615	+	97	154246805	-	Xaut_2867	-	putative transcriptional regulator
2848	 68.39	0	3194612..3195250	+	212	154246806	-	Xaut_2868	-	cobyrinic acid ac-diamide synthase
2849	 65.48	0	3195247..3195498	+	83	154246807	-	Xaut_2869	-	hypothetical protein
2850	 63.53	-1	3195495..3196004	+	169	154246808	-	Xaut_2870	-	hypothetical protein
2851	 66.12	0	3196001..3196546	+	181	154246809	-	Xaut_2871	-	putative conjugal transfer protein precursor
2852	 66.07	0	3196591..3196926	+	111	154246810	-	Xaut_2872	-	hypothetical protein
2853	 69.11	0	3196931..3197707	+	258	154246811	-	Xaut_2873	-	lytic transglycosylase catalytic
2854	 66.76	0	3197898..3198986	+	362	154246812	-	Xaut_2874	-	transposase IS116/IS110/IS902 family protein
2855	 68.76	0	3199525..3201288	+	587	154246813	-	Xaut_2875	-	hypothetical protein
2856	 65.31	0	3201320..3203308	+	662	154246814	-	Xaut_2876	-	TRAG family protein
2857	 65.05	0	3203320..3203751	+	143	154246815	-	Xaut_2877	-	hypothetical protein
2858	 69.21	0	3203921..3204904	+	327	154246816	-	Xaut_2878	-	P-type conjugative transfer ATPase TrbB
2859	 62.76	-1	3204901..3205233	+	110	154246817	-	Xaut_2879	-	conjugal transfer protein TrbC
2860	 71.28	0	3205233..3205514	+	93	154246818	-	Xaut_2880	-	conjugal transfer protein TrbB
2861	 66.63	0	3205522..3207960	+	812	154246819	-	Xaut_2881	-	AAA ATPase
2862	 66.54	0	3207957..3208718	+	253	154246820	-	Xaut_2882	-	P-type conjugative transfer protein TrbJ
2863	 70.45	0	3208741..3209031	+	96	154246821	-	Xaut_2883	-	hypothetical protein
2864	 68.66	0	3209035..3210387	+	450	154246822	-	Xaut_2884	-	P-type conjugative transfer protein TrbL
2865	 65.94	0	3210387..3211070	+	227	154246823	-	Xaut_2885	-	conjugal transfer protein
2866	 66.08	0	3211067..3212092	+	341	154246824	-	Xaut_2886	-	P-type conjugative transfer protein TrbG
2867	 67.74	0	3212089..3213294	+	401	154246825	-	Xaut_2887	-	conjugation TrbI family protein
2868	 58.14	-2	3214635..3215021	-	128	154246826	-	Xaut_2890	-	hypothetical protein
2869	 63.87	0	3215176..3215568	-	130	154246827	-	Xaut_2891	-	rhodanese domain-containing protein
2870	 62.58	-1	3215580..3216485	-	301	154246828	-	Xaut_2892	-	beta-lactamase domain-containing protein
2871	 67.78	0	3216509..3217315	-	268	154246829	-	Xaut_2893	-	hypothetical protein
2872	 67.32	0	3217315..3217773	-	152	154246830	-	Xaut_2894	-	protein of unknown function DUF395 YeeE/YedE
2873	 65.96	0	3217778..3218203	-	141	154246831	-	Xaut_2895	-	protein of unknown function DUF395 YeeE/YedE
2874	 58.05	-2	3218491..3218931	+	146	154246832	-	Xaut_2896	-	regulatory protein ArsR
2875	 58.96	-2	3219058..3219810	+	250	154246833	-	Xaut_2897	-	beta-lactamase domain-containing protein
2876	 61.14	-1	3219856..3221376	+	506	154246834	-	Xaut_2898	-	Bilirubin oxidase
2877	 64.70	0	3221408..3222067	-	219	154246835	-	Xaut_2899	-	flavoprotein involved in K+ transport-like protein
2878	 67.38	0	3222636..3223058	-	140	154246836	-	Xaut_2900	-	MerR family transcriptional regulator
2879	 67.61	0	3223144..3223569	+	141	154246837	-	Xaut_2901	-	mercuric transporter MerT
2880	 63.97	0	3223590..3223886	+	98	154246838	-	Xaut_2902	-	mercuric transport protein periplasmic component
2881	 67.62	0	3224132..3226435	+	767	154246839	-	Xaut_2903	-	mercuric reductase
2882	 63.77	0	3226638..3227984	+	448	154246840	-	Xaut_2904	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
2883	 64.00	0	3228347..3229207	-	286	154246841	-	Xaut_2905	-	integrase catalytic region
2884	 61.86	-1	3229204..3229494	-	96	154246842	-	Xaut_2906	-	transposase IS3/IS911 family protein
2885	 68.94	0	3229593..3230648	-	351	154246843	-	Xaut_2907	-	hypothetical protein
2886	 68.33	0	3231510..3232229	-	239	154246844	-	Xaut_2908	-	nitroreductase
2887	 63.57	0	3232658..3232948	-	96	154246845	-	Xaut_2909	-	hypothetical protein
2888	 61.90	-1	3233071..3233406	+	111	154246846	-	Xaut_2910	-	hypothetical protein
2889	 68.47	0	3234409..3235572	-	387	154246847	-	Xaut_2912	-	hypothetical protein
2890	 67.12	0	3236067..3236732	+	221	154246848	-	Xaut_2913	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
2891	 68.18	0	3236795..3237124	+	109	154246849	-	Xaut_2914	-	ferredoxin
2892	 69.90	0	3237140..3237850	-	236	154246850	-	Xaut_2915	-	hypothetical protein
2893	 70.75	0	3238149..3240374	-	741	154246851	-	Xaut_2916	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
2894	 69.70	0	3240378..3240839	-	153	154246852	-	Xaut_2917	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
2895	 73.37	+1	3241237..3242400	+	387	154246853	-	Xaut_2918	-	8-amino-7-oxononanoate synthase
2896	 70.87	0	3242397..3243038	+	213	154246854	-	Xaut_2919	-	dithiobiotin synthetase
2897	 69.67	0	3243035..3244300	+	421	154246855	-	Xaut_2920	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
2898	 72.53	+1	3244303..3245292	+	329	154246856	-	Xaut_2921	-	3-oxoacyl-(acyl carrier protein) synthase II
2899	 71.56	+1	3245299..3245850	-	183	154246857	-	Xaut_2922	-	superoxide dismutase copper/zinc binding
2900	 73.40	+1	3246124..3247548	-	474	154246858	-	Xaut_2923	-	type III effector Hrp-dependent outers
2901	 70.28	0	3247545..3248789	-	414	154246859	-	Xaut_2924	-	ribulose-bisphosphate carboxylase
2902	 67.15	0	3248915..3249745	-	276	154246860	-	Xaut_2925	-	semialdehyde dehydrogenase NAD - binding
2903	 67.41	0	3249815..3251155	-	446	154246861	-	Xaut_2926	-	major facilitator transporter
2904	 69.58	0	3251386..3252312	+	308	154246862	-	Xaut_2927	-	LysR family transcriptional regulator
2905	 69.67	0	3252364..3253494	-	376	154246863	-	Xaut_2928	-	helix-turn-helix domain-containing protein
2906	 67.13	0	3253673..3254104	-	143	154246864	-	Xaut_2929	-	nucleoside diphosphate kinase regulator
2907	 68.97	0	3254499..3254975	+	158	154246865	-	Xaut_2930	-	transcription elongation factor regulatory protein
2908	 69.05	0	3255479..3256525	+	348	154246866	-	Xaut_2931	-	luciferase family protein
2909	 68.91	0	3256766..3257479	-	237	154246867	-	Xaut_2932	-	short-chain dehydrogenase/reductase SDR
2910	 65.63	0	3257527..3258204	-	225	154246868	-	Xaut_2933	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2911	 63.80	0	3258257..3259024	-	255	154246869	-	Xaut_2934	-	enoyl-CoA hydratase/isomerase
2912	 66.19	0	3259074..3259706	-	210	154246870	-	Xaut_2935	-	glutathione S-transferase domain-containing protein
2913	 69.06	0	3259819..3260697	+	292	154246871	-	Xaut_2936	-	LysR family transcriptional regulator
2914	 66.38	0	3260992..3262044	-	350	154246872	-	Xaut_2937	-	helix-turn-helix domain-containing protein
2915	 62.14	-1	3262204..3263286	+	360	154246873	-	Xaut_2938	-	NapD-like protein
2916	 64.63	0	3263331..3265001	+	556	154246874	-	Xaut_2939	-	sulfatase
2917	 71.03	0	3265159..3265410	+	83	154246875	-	Xaut_2940	-	hypothetical protein
2918	 65.21	0	3266114..3267280	+	388	154246876	-	Xaut_2941	-	spermidine/putrescine ABC transporter ATPase subunit
2919	 64.38	0	3267424..3268341	+	305	154246877	-	Xaut_2942	-	binding-protein-dependent transport systems inner membrane component
2920	 63.98	0	3268338..3269156	+	272	154246878	-	Xaut_2943	-	ornithine carbamoyltransferase
2921	 69.46	0	3269259..3269723	-	154	154246879	-	Xaut_2944	-	protein of unknown function DUF306 Meta and HslJ
2922	 70.63	0	3269723..3271789	-	688	154246880	-	Xaut_2945	-	hypothetical protein
2923	 73.16	+1	3271821..3274652	-	943	154246881	-	Xaut_2946	-	hypothetical protein
2924	 72.62	+1	3274652..3275626	-	324	154246882	-	Xaut_2947	-	hypothetical protein
2925	 70.76	0	3275623..3276624	-	333	154246883	-	Xaut_2948	-	ATPase
2926	 69.28	0	3276862..3277512	+	216	154246884	-	Xaut_2949	-	hypothetical protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.