IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2792	 68.92	0	3132030..3132605	-	191	154246750	-	Xaut_2811	-	hypothetical protein
2793	 67.96	0	3132901..3133674	+	257	154246751	-	Xaut_2812	-	short-chain dehydrogenase/reductase SDR
2794	 71.51	+1	3133773..3134702	+	309	154246752	-	Xaut_2813	-	methylated-DNA--protein-cysteine methyltransferase
2795	 67.14	0	3134997..3136058	-	353	154246753	-	Xaut_2814	-	ferrochelatase
2796	 65.00	0	3136423..3136842	+	139	154246754	-	Xaut_2815	-	hypothetical protein
2797	 62.81	-1	3137282..3137644	-	120	154246755	-	Xaut_2816	-	response regulator receiver protein
2798	 67.79	0	3137835..3138722	+	295	154246756	-	Xaut_2817	-	N-formylglutamate amidohydrolase
2799	 68.58	0	3139954..3140736	+	260	154246757	-	Xaut_2818	-	histidinol-phosphate phosphatase, putative
2800	 67.62	0	3140782..3141729	-	315	154246758	-	Xaut_2819	-	alpha/beta hydrolase fold
2801	 72.80	+1	3141844..3142479	-	211	154246759	-	Xaut_2820	-	hypothetical protein
2802	 64.40	0	3142730..3143215	+	161	154246760	-	Xaut_2821	-	heat shock protein Hsp20
2803	 71.02	0	3143317..3144396	+	359	154246761	-	Xaut_2822	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
2804	 73.74	+1	3144566..3144862	-	98	154246762	-	Xaut_2823	-	thiamineS protein
2805	 68.60	0	3144865..3145950	-	361	154246763	-	Xaut_2824	-	glycosyl hydrolase BNR repeat-containing glycosyl hydrolase
2806	 65.04	0	3146117..3146731	+	204	154246764	-	Xaut_2825	-	TetR family transcriptional regulator
2807	 72.38	+1	3146829..3148019	+	396	154246765	-	Xaut_2826	-	RND family efflux transporter MFP subunit
2808	 68.69	0	3148016..3151177	+	1053	154246766	-	Xaut_2827	-	acriflavin resistance protein
2809	 67.19	0	3151355..3151927	-	190	154246767	-	Xaut_2828	-	hypothetical protein
2810	 72.54	+1	3152444..3153703	-	419	154246768	-	Xaut_2829	-	ErfK/YbiS/YcfS/YnhG family protein
2811	 70.86	0	3153950..3154999	+	349	154246769	-	Xaut_2830	-	methyltransferase type 11
2812	 67.71	0	3154999..3155952	+	317	154246770	-	Xaut_2831	-	5,10-methylenetetrahydrofolate reductase
2813	 67.74	0	3156033..3159848	+	1271	154246771	-	Xaut_2832	-	B12-dependent methionine synthase
2814	 70.13	0	3159929..3160795	-	288	154246772	-	Xaut_2833	-	dimethyladenosine transferase
2815	 73.88	+1	3160792..3161844	-	350	154246773	-	Xaut_2834	-	4-hydroxythreonine-4-phosphate dehydrogenase
2816	 66.12	0	3161984..3162895	-	303	154246774	-	Xaut_2835	-	putative peptidyl-prolyl cis-trans isomerase SurA
2817	 64.10	0	3163006..3165534	-	842	154246775	-	Xaut_2836	-	organic solvent tolerance protein
2818	 64.20	0	3165531..3166625	-	364	154246776	-	Xaut_2837	-	permease YjgP/YjgQ family protein
2819	 67.57	0	3166631..3167848	-	405	154246777	-	Xaut_2838	-	permease YjgP/YjgQ family protein
2820	 68.43	0	3168083..3170179	-	698	154246778	-	Xaut_2839	-	oligopeptidase B
2821	 67.76	0	3170169..3170624	-	151	154246779	-	Xaut_2840	-	methionine-R-sulfoxide reductase
2822	 55.21	-2	3170744..3171031	+	95	154246780	-	Xaut_2841	-	hypothetical protein
2823	 65.48	0	3171110..3171529	+	139	154246781	-	Xaut_2842	-	MucR family transcriptional regulator
2824	 66.61	0	3171641..3173317	-	558	154246782	-	Xaut_2843	-	phosphoenolpyruvate carboxykinase
2825	 71.27	0	3173500..3174216	-	238	154246783	-	Xaut_2844	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
2826	 64.09	0	3174488..3175186	+	232	154246784	-	Xaut_2845	-	two component transcriptional regulator
2827	 69.82	0	3175221..3177029	+	602	154246785	-	Xaut_2846	-	integral membrane sensor signal transduction histidine kinase
2828	 67.11	0	3177033..3177482	+	149	154246786	-	Xaut_2847	-	HPr kinase
2829	 62.94	-1	3177591..3177992	+	133	154246787	-	Xaut_2848	-	PTS system fructose subfamily IIA component
2830	 69.55	0	3177973..3178353	+	126	154246788	-	Xaut_2849	-	phosphotransferase system, phosphocarrier protein HPr
2831	 70.32	0	3178471..3180030	+	519	154246789	-	Xaut_2850	-	integral membrane sensor signal transduction histidine kinase
2832	 62.37	-1	3180242..3181939	-	565	154246790	-	Xaut_2851	-	resolvase domain-containing protein
2833	 66.67	0	3181936..3182457	-	173	154246791	-	Xaut_2852	-	hypothetical protein
2834	 65.36	0	3182460..3182765	-	101	154246792	-	Xaut_2853	-	hypothetical protein
2835	 65.83	0	3182845..3183084	-	79	154246793	-	Xaut_2854	-	hypothetical protein
2836	 66.30	0	3183246..3183521	+	91	154246794	-	Xaut_2855	-	hypothetical protein
2837	 65.37	0	3183533..3184459	+	308	154246795	-	Xaut_2856	-	cation diffusion facilitator family transporter
2838	 66.25	0	3184596..3185807	+	403	154246796	-	Xaut_2857	-	hypothetical protein
2839	 66.67	0	3185956..3188085	+	709	154246797	-	Xaut_2858	-	nuclease
2840	 65.42	0	3188155..3189198	+	347	154246798	-	Xaut_2859	-	hypothetical protein
2841	 64.19	0	3189517..3190443	+	308	154246799	-	Xaut_2860	-	hypothetical protein
2842	 66.89	0	3190592..3191032	+	146	154246800	-	Xaut_2861	-	hypothetical protein
2843	 65.14	0	3191619..3191945	+	108	154246801	-	Xaut_2862	-	hypothetical protein
2844	 58.55	-2	3192104..3192448	+	114	154246802	-	Xaut_2863	-	hypothetical protein
2845	 64.86	0	3192985..3193260	+	91	154246803	-	Xaut_2865	-	hypothetical protein
2846	 66.39	0	3193458..3194171	+	237	154246804	-	Xaut_2866	-	hypothetical protein
2847	 65.99	0	3194322..3194615	+	97	154246805	-	Xaut_2867	-	putative transcriptional regulator
2848	 68.39	0	3194612..3195250	+	212	154246806	-	Xaut_2868	-	cobyrinic acid ac-diamide synthase
2849	 65.48	0	3195247..3195498	+	83	154246807	-	Xaut_2869	-	hypothetical protein
2850	 63.53	-1	3195495..3196004	+	169	154246808	-	Xaut_2870	-	hypothetical protein
2851	 66.12	0	3196001..3196546	+	181	154246809	-	Xaut_2871	-	putative conjugal transfer protein precursor
2852	 66.07	0	3196591..3196926	+	111	154246810	-	Xaut_2872	-	hypothetical protein
2853	 69.11	0	3196931..3197707	+	258	154246811	-	Xaut_2873	-	lytic transglycosylase catalytic
2854	 66.76	0	3197898..3198986	+	362	154246812	-	Xaut_2874	-	transposase IS116/IS110/IS902 family protein
2855	 68.76	0	3199525..3201288	+	587	154246813	-	Xaut_2875	-	hypothetical protein
2856	 65.31	0	3201320..3203308	+	662	154246814	-	Xaut_2876	-	TRAG family protein
2857	 65.05	0	3203320..3203751	+	143	154246815	-	Xaut_2877	-	hypothetical protein
2858	 69.21	0	3203921..3204904	+	327	154246816	-	Xaut_2878	-	P-type conjugative transfer ATPase TrbB
2859	 62.76	-1	3204901..3205233	+	110	154246817	-	Xaut_2879	-	conjugal transfer protein TrbC
2860	 71.28	0	3205233..3205514	+	93	154246818	-	Xaut_2880	-	conjugal transfer protein TrbB
2861	 66.63	0	3205522..3207960	+	812	154246819	-	Xaut_2881	-	AAA ATPase
2862	 66.54	0	3207957..3208718	+	253	154246820	-	Xaut_2882	-	P-type conjugative transfer protein TrbJ
2863	 70.45	0	3208741..3209031	+	96	154246821	-	Xaut_2883	-	hypothetical protein
2864	 68.66	0	3209035..3210387	+	450	154246822	-	Xaut_2884	-	P-type conjugative transfer protein TrbL
2865	 65.94	0	3210387..3211070	+	227	154246823	-	Xaut_2885	-	conjugal transfer protein
2866	 66.08	0	3211067..3212092	+	341	154246824	-	Xaut_2886	-	P-type conjugative transfer protein TrbG
2867	 67.74	0	3212089..3213294	+	401	154246825	-	Xaut_2887	-	conjugation TrbI family protein
2868	 58.14	-2	3214635..3215021	-	128	154246826	-	Xaut_2890	-	hypothetical protein
2869	 63.87	0	3215176..3215568	-	130	154246827	-	Xaut_2891	-	rhodanese domain-containing protein
2870	 62.58	-1	3215580..3216485	-	301	154246828	-	Xaut_2892	-	beta-lactamase domain-containing protein
2871	 67.78	0	3216509..3217315	-	268	154246829	-	Xaut_2893	-	hypothetical protein
2872	 67.32	0	3217315..3217773	-	152	154246830	-	Xaut_2894	-	protein of unknown function DUF395 YeeE/YedE
2873	 65.96	0	3217778..3218203	-	141	154246831	-	Xaut_2895	-	protein of unknown function DUF395 YeeE/YedE
2874	 58.05	-2	3218491..3218931	+	146	154246832	-	Xaut_2896	-	regulatory protein ArsR
2875	 58.96	-2	3219058..3219810	+	250	154246833	-	Xaut_2897	-	beta-lactamase domain-containing protein
2876	 61.14	-1	3219856..3221376	+	506	154246834	-	Xaut_2898	-	Bilirubin oxidase
2877	 64.70	0	3221408..3222067	-	219	154246835	-	Xaut_2899	-	flavoprotein involved in K+ transport-like protein
2878	 67.38	0	3222636..3223058	-	140	154246836	-	Xaut_2900	-	MerR family transcriptional regulator
2879	 67.61	0	3223144..3223569	+	141	154246837	-	Xaut_2901	-	mercuric transporter MerT
2880	 63.97	0	3223590..3223886	+	98	154246838	-	Xaut_2902	-	mercuric transport protein periplasmic component
2881	 67.62	0	3224132..3226435	+	767	154246839	-	Xaut_2903	-	mercuric reductase
2882	 63.77	0	3226638..3227984	+	448	154246840	-	Xaut_2904	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
2883	 64.00	0	3228347..3229207	-	286	154246841	-	Xaut_2905	-	integrase catalytic region
2884	 61.86	-1	3229204..3229494	-	96	154246842	-	Xaut_2906	-	transposase IS3/IS911 family protein
2885	 68.94	0	3229593..3230648	-	351	154246843	-	Xaut_2907	-	hypothetical protein
2886	 68.33	0	3231510..3232229	-	239	154246844	-	Xaut_2908	-	nitroreductase
2887	 63.57	0	3232658..3232948	-	96	154246845	-	Xaut_2909	-	hypothetical protein
2888	 61.90	-1	3233071..3233406	+	111	154246846	-	Xaut_2910	-	hypothetical protein
2889	 68.47	0	3234409..3235572	-	387	154246847	-	Xaut_2912	-	hypothetical protein
2890	 67.12	0	3236067..3236732	+	221	154246848	-	Xaut_2913	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
2891	 68.18	0	3236795..3237124	+	109	154246849	-	Xaut_2914	-	ferredoxin
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.