IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2751	 68.11	0	3067013..3067984	-	323	154246709	-	Xaut_2770	-	taurine dioxygenase
2752	 66.67	0	3068309..3068506	+	65	154246710	-	Xaut_2771	-	hypothetical protein
2753	 68.49	0	3068543..3069145	+	200	154246711	-	Xaut_2772	-	nitroreductase
2754	 69.02	0	3069611..3070969	+	452	154246712	-	Xaut_2773	-	xenobiotic (desulfurization)monooxygenase subunit A
2755	 68.09	0	3071118..3072239	-	373	154246713	-	Xaut_2774	-	ABC transporter substrate-binding protein
2756	 70.51	0	3072396..3073202	-	268	154246714	-	Xaut_2775	-	ABC transporter related
2757	 66.86	0	3073196..3074254	-	352	154246715	-	Xaut_2776	-	binding-protein-dependent transport systems inner membrane component
2758	 64.15	0	3074797..3075312	+	171	154246716	-	Xaut_2777	-	ECF subfamily RNA polymerase sigma-24 factor
2759	 69.89	0	3075494..3076456	+	320	154246717	-	Xaut_2778	-	anti-FecI sigma factor, FecR
2760	 64.35	0	3076603..3079194	+	863	154246718	-	Xaut_2779	-	TonB-dependent siderophore receptor
2761	 71.64	+1	3079188..3080012	+	274	154246719	-	Xaut_2780	-	ABC transporter related
2762	 70.50	0	3080093..3080875	+	260	154246720	-	Xaut_2781	-	ECF subfamily RNA polymerase sigma-24 factor
2763	 72.63	+1	3080872..3081777	+	301	154246721	-	Xaut_2782	-	periplasmic binding protein
2764	 72.80	+1	3081764..3083737	+	657	154246722	-	Xaut_2783	-	iron-hydroxamate transporter permease subunit
2765	 70.36	0	3083748..3084506	+	252	154246723	-	Xaut_2784	-	ferric iron reductase
2766	 71.82	+1	3084697..3088809	-	1370	154246724	-	Xaut_2785	-	amino acid adenylation domain-containing protein
2767	 72.29	+1	3088812..3098438	-	3208	154246725	-	Xaut_2786	-	amino acid adenylation domain-containing protein
2768	 69.55	0	3098435..3098677	-	80	154246726	-	Xaut_2787	-	MbtH domain-containing protein
2769	 70.10	0	3098758..3100503	-	581	154246727	-	Xaut_2788	-	cyclic peptide transporter
2770	 70.76	0	3100770..3101843	+	357	154246728	-	Xaut_2789	-	hypothetical protein
2771	 67.39	0	3101919..3103295	+	458	154246729	-	Xaut_2790	-	L-ornithine 5-monooxygenase (L-ornithine N5-oxygenase)
2772	 68.60	0	3103484..3103999	+	171	154246730	-	Xaut_2791	-	hypothetical protein
2773	 69.61	0	3104417..3105028	-	203	154246731	-	Xaut_2792	-	invasion associated locus B family protein
2774	 66.55	0	3105189..3110987	-	1932	154246732	-	Xaut_2793	-	outer membrane autotransporter
2775	 67.56	0	3111411..3112307	+	298	154246733	-	Xaut_2794	-	helix-turn-helix domain-containing protein
2776	 71.38	0	3112519..3114237	-	572	154246734	-	Xaut_2795	-	thiamine pyrophosphate binding domain-containing protein
2777	 69.38	0	3114508..3115869	-	453	154246735	-	Xaut_2796	-	cyclic nucleotide-binding protein
2778	 64.16	0	3115918..3116355	-	145	154246736	-	Xaut_2797	-	Ion transport 2 domain-containing protein
2779	 66.45	0	3116565..3118394	+	609	154246737	-	Xaut_2798	-	GTP-binding protein TypA
2780	 70.34	0	3118511..3119653	-	380	154246738	-	Xaut_2799	-	FAD dependent oxidoreductase
2781	 71.18	0	3119805..3120203	+	132	154246739	-	Xaut_2800	-	hypothetical protein
2782	 64.48	0	3120200..3121936	+	578	154246740	-	Xaut_2801	-	putative oxidoreductase
2783	 64.10	0	3121970..3122203	+	77	154246741	-	Xaut_2802	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2784	 73.42	+1	3122212..3123174	+	320	154246742	-	Xaut_2803	-	HEAT repeat-containing PBS lyase
2785	 65.00	0	3123371..3124390	-	339	154246743	-	Xaut_2804	-	TRAP dicarboxylate transporter, DctP subunit
2786	 75.80	+2	3124585..3125493	+	302	154246744	-	Xaut_2805	-	regulatory protein IclR
2787	 67.15	0	3125563..3127233	+	556	154246745	-	Xaut_2806	-	acyl-CoA synthetase
2788	 70.73	0	3127278..3128039	+	253	154246746	-	Xaut_2807	-	short-chain dehydrogenase/reductase SDR
2789	 70.59	0	3128226..3129755	+	509	154246747	-	Xaut_2808	-	glycerol-3-phosphate dehydrogenase
2790	 70.82	0	3129779..3131272	+	497	154246748	-	Xaut_2809	-	glycerol kinase
2791	 68.28	0	3131360..3132040	+	226	154246749	-	Xaut_2810	-	cob(II)yrinic acid a,c-diamide reductase
2792	 68.92	0	3132030..3132605	-	191	154246750	-	Xaut_2811	-	hypothetical protein
2793	 67.96	0	3132901..3133674	+	257	154246751	-	Xaut_2812	-	short-chain dehydrogenase/reductase SDR
2794	 71.51	+1	3133773..3134702	+	309	154246752	-	Xaut_2813	-	methylated-DNA--protein-cysteine methyltransferase
2795	 67.14	0	3134997..3136058	-	353	154246753	-	Xaut_2814	-	ferrochelatase
2796	 65.00	0	3136423..3136842	+	139	154246754	-	Xaut_2815	-	hypothetical protein
2797	 62.81	-1	3137282..3137644	-	120	154246755	-	Xaut_2816	-	response regulator receiver protein
2798	 67.79	0	3137835..3138722	+	295	154246756	-	Xaut_2817	-	N-formylglutamate amidohydrolase
2799	 68.58	0	3139954..3140736	+	260	154246757	-	Xaut_2818	-	histidinol-phosphate phosphatase, putative
2800	 67.62	0	3140782..3141729	-	315	154246758	-	Xaut_2819	-	alpha/beta hydrolase fold
2801	 72.80	+1	3141844..3142479	-	211	154246759	-	Xaut_2820	-	hypothetical protein
2802	 64.40	0	3142730..3143215	+	161	154246760	-	Xaut_2821	-	heat shock protein Hsp20
2803	 71.02	0	3143317..3144396	+	359	154246761	-	Xaut_2822	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
2804	 73.74	+1	3144566..3144862	-	98	154246762	-	Xaut_2823	-	thiamineS protein
2805	 68.60	0	3144865..3145950	-	361	154246763	-	Xaut_2824	-	glycosyl hydrolase BNR repeat-containing glycosyl hydrolase
2806	 65.04	0	3146117..3146731	+	204	154246764	-	Xaut_2825	-	TetR family transcriptional regulator
2807	 72.38	+1	3146829..3148019	+	396	154246765	-	Xaut_2826	-	RND family efflux transporter MFP subunit
2808	 68.69	0	3148016..3151177	+	1053	154246766	-	Xaut_2827	-	acriflavin resistance protein
2809	 67.19	0	3151355..3151927	-	190	154246767	-	Xaut_2828	-	hypothetical protein
2810	 72.54	+1	3152444..3153703	-	419	154246768	-	Xaut_2829	-	ErfK/YbiS/YcfS/YnhG family protein
2811	 70.86	0	3153950..3154999	+	349	154246769	-	Xaut_2830	-	methyltransferase type 11
2812	 67.71	0	3154999..3155952	+	317	154246770	-	Xaut_2831	-	5,10-methylenetetrahydrofolate reductase
2813	 67.74	0	3156033..3159848	+	1271	154246771	-	Xaut_2832	-	B12-dependent methionine synthase
2814	 70.13	0	3159929..3160795	-	288	154246772	-	Xaut_2833	-	dimethyladenosine transferase
2815	 73.88	+1	3160792..3161844	-	350	154246773	-	Xaut_2834	-	4-hydroxythreonine-4-phosphate dehydrogenase
2816	 66.12	0	3161984..3162895	-	303	154246774	-	Xaut_2835	-	putative peptidyl-prolyl cis-trans isomerase SurA
2817	 64.10	0	3163006..3165534	-	842	154246775	-	Xaut_2836	-	organic solvent tolerance protein
2818	 64.20	0	3165531..3166625	-	364	154246776	-	Xaut_2837	-	permease YjgP/YjgQ family protein
2819	 67.57	0	3166631..3167848	-	405	154246777	-	Xaut_2838	-	permease YjgP/YjgQ family protein
2820	 68.43	0	3168083..3170179	-	698	154246778	-	Xaut_2839	-	oligopeptidase B
2821	 67.76	0	3170169..3170624	-	151	154246779	-	Xaut_2840	-	methionine-R-sulfoxide reductase
2822	 55.21	-2	3170744..3171031	+	95	154246780	-	Xaut_2841	-	hypothetical protein
2823	 65.48	0	3171110..3171529	+	139	154246781	-	Xaut_2842	-	MucR family transcriptional regulator
2824	 66.61	0	3171641..3173317	-	558	154246782	-	Xaut_2843	-	phosphoenolpyruvate carboxykinase
2825	 71.27	0	3173500..3174216	-	238	154246783	-	Xaut_2844	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
2826	 64.09	0	3174488..3175186	+	232	154246784	-	Xaut_2845	-	two component transcriptional regulator
2827	 69.82	0	3175221..3177029	+	602	154246785	-	Xaut_2846	-	integral membrane sensor signal transduction histidine kinase
2828	 67.11	0	3177033..3177482	+	149	154246786	-	Xaut_2847	-	HPr kinase
2829	 62.94	-1	3177591..3177992	+	133	154246787	-	Xaut_2848	-	PTS system fructose subfamily IIA component
2830	 69.55	0	3177973..3178353	+	126	154246788	-	Xaut_2849	-	phosphotransferase system, phosphocarrier protein HPr
2831	 70.32	0	3178471..3180030	+	519	154246789	-	Xaut_2850	-	integral membrane sensor signal transduction histidine kinase
2832	 62.37	-1	3180242..3181939	-	565	154246790	-	Xaut_2851	-	resolvase domain-containing protein
2833	 66.67	0	3181936..3182457	-	173	154246791	-	Xaut_2852	-	hypothetical protein
2834	 65.36	0	3182460..3182765	-	101	154246792	-	Xaut_2853	-	hypothetical protein
2835	 65.83	0	3182845..3183084	-	79	154246793	-	Xaut_2854	-	hypothetical protein
2836	 66.30	0	3183246..3183521	+	91	154246794	-	Xaut_2855	-	hypothetical protein
2837	 65.37	0	3183533..3184459	+	308	154246795	-	Xaut_2856	-	cation diffusion facilitator family transporter
2838	 66.25	0	3184596..3185807	+	403	154246796	-	Xaut_2857	-	hypothetical protein
2839	 66.67	0	3185956..3188085	+	709	154246797	-	Xaut_2858	-	nuclease
2840	 65.42	0	3188155..3189198	+	347	154246798	-	Xaut_2859	-	hypothetical protein
2841	 64.19	0	3189517..3190443	+	308	154246799	-	Xaut_2860	-	hypothetical protein
2842	 66.89	0	3190592..3191032	+	146	154246800	-	Xaut_2861	-	hypothetical protein
2843	 65.14	0	3191619..3191945	+	108	154246801	-	Xaut_2862	-	hypothetical protein
2844	 58.55	-2	3192104..3192448	+	114	154246802	-	Xaut_2863	-	hypothetical protein
2845	 64.86	0	3192985..3193260	+	91	154246803	-	Xaut_2865	-	hypothetical protein
2846	 66.39	0	3193458..3194171	+	237	154246804	-	Xaut_2866	-	hypothetical protein
2847	 65.99	0	3194322..3194615	+	97	154246805	-	Xaut_2867	-	putative transcriptional regulator
2848	 68.39	0	3194612..3195250	+	212	154246806	-	Xaut_2868	-	cobyrinic acid ac-diamide synthase
2849	 65.48	0	3195247..3195498	+	83	154246807	-	Xaut_2869	-	hypothetical protein
2850	 63.53	-1	3195495..3196004	+	169	154246808	-	Xaut_2870	-	hypothetical protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.