IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2706	 69.43	0	3019197..3020678	+	493	154246664	-	Xaut_2725	-	aldehyde dehydrogenase
2707	 69.16	0	3020861..3021502	-	213	154246665	-	Xaut_2726	-	thiopurine S-methyltransferase
2708	 67.29	0	3021687..3023123	+	478	154246666	-	Xaut_2727	-	putative aminotransferase
2709	 68.46	0	3023297..3023686	+	129	154246667	-	Xaut_2728	-	hypothetical protein
2710	 69.59	0	3023741..3024424	-	227	154246668	-	Xaut_2729	-	glutathione S-transferase domain-containing protein
2711	 69.22	0	3024460..3025320	-	286	154246669	-	Xaut_2730	-	hypothetical protein
2712	 69.08	0	3025554..3026216	-	220	154246670	-	Xaut_2731	-	ribonuclease T2
2713	 66.48	0	3026213..3026734	-	173	154246671	-	Xaut_2732	-	hypothetical protein
2714	 70.28	0	3027036..3028334	+	432	154246672	-	Xaut_2733	-	Orn/DAP/Arg decarboxylase 2
2715	 65.84	0	3028463..3029428	+	321	154246673	-	Xaut_2734	-	putative sulfite oxidase subunit YedY
2716	 67.65	0	3029451..3029960	-	169	154246674	-	Xaut_2735	-	hypothetical protein
2717	 70.25	0	3030261..3030734	-	157	154246675	-	Xaut_2736	-	hypothetical protein
2718	 65.25	0	3030870..3032072	-	400	154246676	-	Xaut_2737	-	aminotransferase class I and II
2719	 67.13	0	3032345..3032995	+	216	154246677	-	Xaut_2738	-	glutathione S-transferase domain-containing protein
2720	 70.80	0	3033178..3033540	+	120	154246678	-	Xaut_2739	-	hypothetical protein
2721	 71.00	0	3033593..3034792	+	399	154246679	-	Xaut_2740	-	glucose sorbosone dehydrogenase
2722	 69.82	0	3034894..3036258	+	454	154246680	-	Xaut_2741	-	hydroxydechloroatrazine ethylaminohydrolase
2723	 58.67	-2	3036277..3036651	-	124	154246681	-	Xaut_2742	-	hypothetical protein
2724	 61.94	-1	3036702..3037484	-	260	154246682	-	Xaut_2743	-	hypothetical protein
2725	 67.40	0	3037680..3040280	+	866	154246683	-	Xaut_2744	-	excinuclease ABC subunit B
2726	 68.10	0	3040452..3041081	+	209	154246684	-	Xaut_2745	-	hypothetical protein
2727	 67.70	0	3041121..3041603	-	160	154246685	-	Xaut_2746	-	hypothetical protein
2728	 72.50	+1	3041814..3042362	+	182	154246686	-	Xaut_2747	-	hypothetical protein
2729	 71.41	0	3042623..3043360	+	245	154246687	-	Xaut_2748	-	hypothetical protein
2730	 67.36	0	3043375..3043809	-	144	154246688	-	Xaut_2749	-	GtrA family protein
2731	 66.22	0	3044166..3047528	+	1120	154246689	-	Xaut_2750	-	carbamoyl-phosphate synthase, large subunit
2732	 66.07	0	3047774..3048280	+	168	154246690	-	Xaut_2751	-	transcription elongation factor GreA
2733	 65.01	0	3048379..3048921	-	180	154246691	-	Xaut_2752	-	AsnC family transcriptional regulator
2734	 66.56	0	3049179..3050141	+	320	154246692	-	Xaut_2753	-	thioredoxin reductase
2735	 64.65	0	3050421..3051311	+	296	154246693	-	Xaut_2754	-	LysR family transcriptional regulator
2736	 67.45	0	3051628..3052140	+	170	154246694	-	Xaut_2755	-	peptidoglycan binding domain-containing protein
2737	 73.12	+1	3052213..3052491	+	92	154246695	-	Xaut_2756	-	periplasmic protein TonB, links inner and outer membranes
2738	 69.40	0	3052502..3053380	-	292	154246696	-	Xaut_2757	-	LysR family transcriptional regulator
2739	 67.26	0	3053526..3054539	+	337	154246697	-	Xaut_2758	-	zinc-binding alcohol dehydrogenase
2740	 69.85	0	3055018..3055803	-	261	154246698	-	Xaut_2759	-	short-chain dehydrogenase/reductase SDR
2741	 65.32	0	3056144..3057778	+	544	154246699	-	Xaut_2760	-	extracellular solute-binding protein
2742	 66.06	0	3057847..3059481	+	544	154246700	-	Xaut_2761	-	extracellular solute-binding protein
2743	 66.77	0	3059485..3060453	+	322	154246701	-	Xaut_2762	-	binding-protein-dependent transport systems inner membrane component
2744	 70.58	0	3060466..3061359	+	297	154246702	-	Xaut_2763	-	binding-protein-dependent transport systems inner membrane component
2745	 72.50	+1	3061356..3062366	+	336	154246703	-	Xaut_2764	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
2746	 71.37	0	3062329..3063348	+	339	154246704	-	Xaut_2765	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
2747	 71.06	0	3063345..3063617	+	90	154246705	-	Xaut_2766	-	hypothetical protein
2748	 71.57	+1	3063707..3065155	-	482	154246706	-	Xaut_2767	-	oxidoreductase
2749	 68.63	0	3065303..3066526	-	407	154246707	-	Xaut_2768	-	acyl-CoA dehydrogenase type 2
2750	 69.86	0	3066587..3066931	-	114	154246708	-	Xaut_2769	-	hypothetical protein
2751	 68.11	0	3067013..3067984	-	323	154246709	-	Xaut_2770	-	taurine dioxygenase
2752	 66.67	0	3068309..3068506	+	65	154246710	-	Xaut_2771	-	hypothetical protein
2753	 68.49	0	3068543..3069145	+	200	154246711	-	Xaut_2772	-	nitroreductase
2754	 69.02	0	3069611..3070969	+	452	154246712	-	Xaut_2773	-	xenobiotic (desulfurization)monooxygenase subunit A
2755	 68.09	0	3071118..3072239	-	373	154246713	-	Xaut_2774	-	ABC transporter substrate-binding protein
2756	 70.51	0	3072396..3073202	-	268	154246714	-	Xaut_2775	-	ABC transporter related
2757	 66.86	0	3073196..3074254	-	352	154246715	-	Xaut_2776	-	binding-protein-dependent transport systems inner membrane component
2758	 64.15	0	3074797..3075312	+	171	154246716	-	Xaut_2777	-	ECF subfamily RNA polymerase sigma-24 factor
2759	 69.89	0	3075494..3076456	+	320	154246717	-	Xaut_2778	-	anti-FecI sigma factor, FecR
2760	 64.35	0	3076603..3079194	+	863	154246718	-	Xaut_2779	-	TonB-dependent siderophore receptor
2761	 71.64	+1	3079188..3080012	+	274	154246719	-	Xaut_2780	-	ABC transporter related
2762	 70.50	0	3080093..3080875	+	260	154246720	-	Xaut_2781	-	ECF subfamily RNA polymerase sigma-24 factor
2763	 72.63	+1	3080872..3081777	+	301	154246721	-	Xaut_2782	-	periplasmic binding protein
2764	 72.80	+1	3081764..3083737	+	657	154246722	-	Xaut_2783	-	iron-hydroxamate transporter permease subunit
2765	 70.36	0	3083748..3084506	+	252	154246723	-	Xaut_2784	-	ferric iron reductase
2766	 71.82	+1	3084697..3088809	-	1370	154246724	-	Xaut_2785	-	amino acid adenylation domain-containing protein
2767	 72.29	+1	3088812..3098438	-	3208	154246725	-	Xaut_2786	-	amino acid adenylation domain-containing protein
2768	 69.55	0	3098435..3098677	-	80	154246726	-	Xaut_2787	-	MbtH domain-containing protein
2769	 70.10	0	3098758..3100503	-	581	154246727	-	Xaut_2788	-	cyclic peptide transporter
2770	 70.76	0	3100770..3101843	+	357	154246728	-	Xaut_2789	-	hypothetical protein
2771	 67.39	0	3101919..3103295	+	458	154246729	-	Xaut_2790	-	L-ornithine 5-monooxygenase (L-ornithine N5-oxygenase)
2772	 68.60	0	3103484..3103999	+	171	154246730	-	Xaut_2791	-	hypothetical protein
2773	 69.61	0	3104417..3105028	-	203	154246731	-	Xaut_2792	-	invasion associated locus B family protein
2774	 66.55	0	3105189..3110987	-	1932	154246732	-	Xaut_2793	-	outer membrane autotransporter
2775	 67.56	0	3111411..3112307	+	298	154246733	-	Xaut_2794	-	helix-turn-helix domain-containing protein
2776	 71.38	0	3112519..3114237	-	572	154246734	-	Xaut_2795	-	thiamine pyrophosphate binding domain-containing protein
2777	 69.38	0	3114508..3115869	-	453	154246735	-	Xaut_2796	-	cyclic nucleotide-binding protein
2778	 64.16	0	3115918..3116355	-	145	154246736	-	Xaut_2797	-	Ion transport 2 domain-containing protein
2779	 66.45	0	3116565..3118394	+	609	154246737	-	Xaut_2798	-	GTP-binding protein TypA
2780	 70.34	0	3118511..3119653	-	380	154246738	-	Xaut_2799	-	FAD dependent oxidoreductase
2781	 71.18	0	3119805..3120203	+	132	154246739	-	Xaut_2800	-	hypothetical protein
2782	 64.48	0	3120200..3121936	+	578	154246740	-	Xaut_2801	-	putative oxidoreductase
2783	 64.10	0	3121970..3122203	+	77	154246741	-	Xaut_2802	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2784	 73.42	+1	3122212..3123174	+	320	154246742	-	Xaut_2803	-	HEAT repeat-containing PBS lyase
2785	 65.00	0	3123371..3124390	-	339	154246743	-	Xaut_2804	-	TRAP dicarboxylate transporter, DctP subunit
2786	 75.80	+2	3124585..3125493	+	302	154246744	-	Xaut_2805	-	regulatory protein IclR
2787	 67.15	0	3125563..3127233	+	556	154246745	-	Xaut_2806	-	acyl-CoA synthetase
2788	 70.73	0	3127278..3128039	+	253	154246746	-	Xaut_2807	-	short-chain dehydrogenase/reductase SDR
2789	 70.59	0	3128226..3129755	+	509	154246747	-	Xaut_2808	-	glycerol-3-phosphate dehydrogenase
2790	 70.82	0	3129779..3131272	+	497	154246748	-	Xaut_2809	-	glycerol kinase
2791	 68.28	0	3131360..3132040	+	226	154246749	-	Xaut_2810	-	cob(II)yrinic acid a,c-diamide reductase
2792	 68.92	0	3132030..3132605	-	191	154246750	-	Xaut_2811	-	hypothetical protein
2793	 67.96	0	3132901..3133674	+	257	154246751	-	Xaut_2812	-	short-chain dehydrogenase/reductase SDR
2794	 71.51	+1	3133773..3134702	+	309	154246752	-	Xaut_2813	-	methylated-DNA--protein-cysteine methyltransferase
2795	 67.14	0	3134997..3136058	-	353	154246753	-	Xaut_2814	-	ferrochelatase
2796	 65.00	0	3136423..3136842	+	139	154246754	-	Xaut_2815	-	hypothetical protein
2797	 62.81	-1	3137282..3137644	-	120	154246755	-	Xaut_2816	-	response regulator receiver protein
2798	 67.79	0	3137835..3138722	+	295	154246756	-	Xaut_2817	-	N-formylglutamate amidohydrolase
2799	 68.58	0	3139954..3140736	+	260	154246757	-	Xaut_2818	-	histidinol-phosphate phosphatase, putative
2800	 67.62	0	3140782..3141729	-	315	154246758	-	Xaut_2819	-	alpha/beta hydrolase fold
2801	 72.80	+1	3141844..3142479	-	211	154246759	-	Xaut_2820	-	hypothetical protein
2802	 64.40	0	3142730..3143215	+	161	154246760	-	Xaut_2821	-	heat shock protein Hsp20
2803	 71.02	0	3143317..3144396	+	359	154246761	-	Xaut_2822	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
2804	 73.74	+1	3144566..3144862	-	98	154246762	-	Xaut_2823	-	thiamineS protein
2805	 68.60	0	3144865..3145950	-	361	154246763	-	Xaut_2824	-	glycosyl hydrolase BNR repeat-containing glycosyl hydrolase
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.