IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2503	 69.35	0	2815782..2817833	-	683	154246461	-	Xaut_2520	-	stage II sporulation E family protein
2504	 72.78	+1	2817833..2818666	-	277	154246462	-	Xaut_2521	-	hypothetical protein
2505	 69.48	0	2818656..2819402	-	248	154246463	-	Xaut_2522	-	hypothetical protein
2506	 70.06	0	2819547..2820431	+	294	154246464	-	Xaut_2523	-	hypothetical protein
2507	 72.86	+1	2820428..2822413	+	661	154246465	-	Xaut_2524	-	major facilitator transporter
2508	 69.50	0	2822413..2823471	+	352	154246466	-	Xaut_2525	-	ABC-type uncharacterized transport system, periplasmic component
2509	 70.63	0	2823471..2824151	+	226	154246467	-	Xaut_2526	-	hypothetical protein
2510	 67.12	0	2824673..2825116	+	147	154246468	-	Xaut_2527	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
2511	 69.76	0	2825411..2827060	+	549	154246469	-	Xaut_2528	-	Na+/H+ antiporter
2512	 64.69	0	2827044..2827346	+	100	154246470	-	Xaut_2529	-	anti-sigma-factor antagonist
2513	 71.34	0	2827403..2828494	-	363	154246471	-	Xaut_2530	-	lysine--tRNA ligase
2514	 61.75	-1	2828637..2829206	+	189	154246472	-	Xaut_2531	-	elongation factor P
2515	 66.19	0	2829398..2829814	+	138	154246473	-	Xaut_2532	-	response regulator receiver protein
2516	 69.72	0	2829943..2830596	-	217	154246474	-	Xaut_2533	-	ribulose-phosphate 3-epimerase
2517	 70.66	0	2830746..2831846	-	366	154246475	-	Xaut_2534	-	heat-inducible transcription repressor
2518	 67.65	0	2832104..2832817	+	237	154246476	-	Xaut_2535	-	ribonuclease PH
2519	 69.65	0	2832817..2833452	+	211	154246477	-	Xaut_2536	-	putative deoxyribonucleotide triphosphate pyrophosphatase
2520	 71.50	+1	2833536..2834735	+	399	154246478	-	Xaut_2537	-	putative oxygen-independent coproporphyrinogen III oxidase
2521	 73.12	+1	2834833..2835669	+	278	154246479	-	Xaut_2538	-	pyrroline-5-carboxylate reductase
2522	 70.37	0	2835703..2836431	+	242	154246480	-	Xaut_2539	-	TetR family transcriptional regulator
2523	 72.06	+1	2836433..2836933	+	166	154246481	-	Xaut_2540	-	hypothetical protein
2524	 63.64	0	2836970..2837299	-	109	154246482	-	Xaut_2541	-	hypothetical protein
2525	 70.51	0	2837464..2838270	-	268	154246483	-	Xaut_2542	-	putative PAS/PAC sensor protein
2526	 73.53	+1	2838558..2839271	+	237	154246484	-	Xaut_2543	-	hypothetical protein
2527	 67.83	0	2839282..2839539	+	85	154246485	-	Xaut_2544	-	hypothetical protein
2528	 69.14	0	2839603..2840979	+	458	154246486	-	Xaut_2545	-	GTP-binding protein EngA
2529	 63.07	-1	2841155..2841655	-	166	154246487	-	Xaut_2546	-	hypothetical protein
2530	 72.78	+1	2841990..2842316	-	108	154246488	-	Xaut_2547	-	hypothetical protein
2531	 68.99	0	2842569..2843387	+	272	154246489	-	Xaut_2548	-	prolipoprotein diacylglyceryl transferase
2532	 72.54	+1	2843384..2844490	+	368	154246490	-	Xaut_2549	-	hypothetical protein
2533	 69.92	0	2844501..2845268	+	255	154246491	-	Xaut_2550	-	hypothetical protein
2534	 71.74	+1	2845301..2845852	+	183	154246492	-	Xaut_2551	-	hypothetical protein
2535	 72.84	+1	2846041..2846736	+	231	154246493	-	Xaut_2552	-	hypothetical protein
2536	 66.35	0	2846954..2847907	+	317	154246494	-	Xaut_2553	-	ribose-phosphate pyrophosphokinase
2537	 60.89	-1	2848056..2848886	+	276	154246495	-	Xaut_2554	-	hypothetical protein
2538	 69.49	0	2848871..2849686	-	271	154246496	-	Xaut_2555	-	phosphoesterase PA-phosphatase related
2539	 66.00	0	2849847..2850740	-	297	154246497	-	Xaut_2556	-	branched-chain amino acid aminotransferase
2540	 68.48	0	2850950..2851501	+	183	154246498	-	Xaut_2557	-	MarR family transcriptional regulator
2541	 70.83	0	2851592..2852311	+	239	154246499	-	Xaut_2558	-	two component transcriptional regulator
2542	 67.97	0	2852314..2853696	+	460	154246500	-	Xaut_2559	-	integral membrane sensor signal transduction histidine kinase
2543	 70.72	0	2853742..2854653	+	303	154246501	-	Xaut_2560	-	tRNA nucleotidyltransferase/poly(A) polymerase family protein
2544	 68.40	0	2854717..2854947	+	76	154246502	-	Xaut_2561	-	SpoVT/AbrB domain-containing protein
2545	 66.67	0	2854947..2855354	+	135	154246503	-	Xaut_2562	-	PilT domain-containing protein
2546	 47.62	-2	2855443..2856030	-	195	154246504	-	Xaut_2563	-	hypothetical protein
2547	 71.91	+1	2856119..2857414	-	431	154246505	-	Xaut_2564	-	hypothetical protein
2548	 71.66	+1	2857420..2858421	-	333	154246506	-	Xaut_2565	-	ribokinase-like domain-containing protein
2549	 67.81	0	2858686..2860086	+	466	154246507	-	Xaut_2566	-	phosphoglucosamine mutase
2550	 68.50	0	2860181..2860891	+	236	154246508	-	Xaut_2567	-	opacity protein and related surface antigens-like protein
2551	 70.10	0	2860923..2861330	-	135	154246509	-	Xaut_2568	-	response regulator receiver protein
2552	 66.67	0	2861330..2861728	-	132	154246510	-	Xaut_2569	-	response regulator receiver protein
2553	 66.89	0	2861943..2862398	+	151	154246511	-	Xaut_2570	-	3-dehydroquinate dehydratase
2554	 69.90	0	2862395..2863354	+	319	154246512	-	Xaut_2571	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
2555	 67.14	0	2863397..2863819	-	140	154246513	-	Xaut_2572	-	DGPFAETKE family protein
2556	 68.85	0	2863908..2864870	-	320	154246514	-	Xaut_2573	-	LysR family transcriptional regulator
2557	 65.09	0	2865106..2866560	+	484	154246515	-	Xaut_2574	-	4-hydroxyphenylacetate 3-hydroxylase
2558	 71.18	0	2866557..2867066	+	169	154246516	-	Xaut_2575	-	flavin reductase domain-containing protein
2559	 65.00	0	2867077..2867496	+	139	154246517	-	Xaut_2576	-	endoribonuclease L-PSP
2560	 63.47	-1	2867877..2868908	+	343	154246518	-	Xaut_2577	-	extracellular solute-binding protein
2561	 65.61	0	2869119..2869970	+	283	154246519	-	Xaut_2578	-	binding-protein-dependent transport systems inner membrane component
2562	 66.19	0	2869970..2870803	+	277	154246520	-	Xaut_2579	-	binding-protein-dependent transport systems inner membrane component
2563	 68.99	0	2870832..2871950	+	372	154246521	-	Xaut_2580	-	spermidine/putrescine ABC transporter ATPase subunit
2564	 75.08	+1	2872198..2872851	-	217	154246522	-	Xaut_2581	-	hypothetical protein
2565	 69.85	0	2872890..2874083	+	397	154246523	-	Xaut_2582	-	acetylornithine deacetylase (ArgE)
2566	 70.37	0	2874112..2874543	+	143	154246524	-	Xaut_2583	-	hypothetical protein
2567	 68.92	0	2874678..2875919	+	413	154246525	-	Xaut_2584	-	arginine biosynthesis bifunctional protein ArgJ
2568	 68.02	0	2875916..2876653	+	245	154246526	-	Xaut_2585	-	hypothetical protein
2569	 71.22	0	2876650..2877066	+	138	154246527	-	Xaut_2586	-	NUDIX hydrolase
2570	 70.53	0	2877077..2877931	+	284	154246528	-	Xaut_2587	-	hypothetical protein
2571	 69.09	0	2877960..2878826	+	288	154246529	-	Xaut_2588	-	short-chain dehydrogenase/reductase SDR
2572	 68.37	0	2879018..2880130	+	370	154246530	-	Xaut_2589	-	3-isopropylmalate dehydrogenase
2573	 70.47	0	2880291..2880632	-	113	154246531	-	Xaut_2590	-	rhodanese domain-containing protein
2574	 71.75	+1	2880937..2881251	+	104	154246532	-	Xaut_2591	-	17 kDa surface antigen
2575	 71.04	0	2881413..2882372	+	319	154246533	-	Xaut_2592	-	LAO/AO transport system ATPase
2576	 70.82	0	2882456..2883754	+	432	154246534	-	Xaut_2593	-	cell wall hydrolase SleB
2577	 66.50	0	2883887..2884504	-	205	154246535	-	Xaut_2594	-	hypothetical protein
2578	 72.92	+1	2884669..2885532	+	287	154246536	-	Xaut_2595	-	hypothetical protein
2579	 66.46	0	2885653..2886138	+	161	154246537	-	Xaut_2596	-	redoxin domain-containing protein
2580	 60.87	-1	2886233..2886439	-	68	154246538	-	Xaut_2597	-	hypothetical protein
2581	 53.89	-2	2886744..2886923	+	59	154246539	-	Xaut_2598	-	hypothetical protein
2582	 68.30	0	2887056..2888891	+	611	154246540	-	Xaut_2599	-	ABC transporter related
2583	 65.83	0	2888916..2889392	-	158	154246541	-	Xaut_2600	-	dehydratase
2584	 64.95	0	2889389..2889853	-	154	154246542	-	Xaut_2601	-	dehydratase
2585	 63.49	-1	2889956..2890144	-	62	154246543	-	Xaut_2602	-	hypothetical protein
2586	 54.05	-2	2890213..2890545	-	110	154246544	-	Xaut_2603	-	hypothetical protein
2587	 72.94	+1	2891080..2891541	-	153	154246545	-	Xaut_2604	-	dehydratase
2588	 66.84	0	2891561..2892748	-	395	154246546	-	Xaut_2605	-	translation-associated GTPase
2589	 66.17	0	2892823..2893431	-	202	154246547	-	Xaut_2606	-	aminoacyl-tRNA hydrolase
2590	 69.28	0	2893502..2894113	-	203	154246548	-	Xaut_2607	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
2591	 70.53	0	2894303..2895388	+	361	154246549	-	Xaut_2608	-	cytochrome c class I
2592	 65.60	0	2895398..2895679	+	93	154246550	-	Xaut_2609	-	hypothetical protein
2593	 70.21	0	2895673..2896800	-	375	154246551	-	Xaut_2610	-	alcohol dehydrogenase
2594	 70.60	0	2897006..2897692	-	228	154246552	-	Xaut_2611	-	TetR family transcriptional regulator
2595	 65.71	0	2897852..2898478	+	208	154246553	-	Xaut_2612	-	OsmC family protein
2596	 67.20	0	2898570..2899691	+	373	154246554	-	Xaut_2613	-	putative acyl-CoA dehydrogenase family protein
2597	 66.20	0	2899835..2900698	+	287	154246555	-	Xaut_2614	-	rhodanese domain-containing protein
2598	 68.94	0	2900717..2901331	+	204	154246556	-	Xaut_2615	-	DSBA oxidoreductase
2599	 68.36	0	2901328..2902506	+	392	154246557	-	Xaut_2616	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2600	 65.57	0	2902582..2903946	+	454	154246558	-	Xaut_2617	-	ABC transporter nitrate-binding protein
2601	 66.31	0	2903950..2904789	+	279	154246559	-	Xaut_2618	-	nitrate ABC transporter, inner membrane subunit
2602	 68.50	0	2904786..2905712	+	308	154246560	-	Xaut_2619	-	ABC transporter related
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.