IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2468	 70.75	0	2777656..2778438	-	260	154246426	-	Xaut_2485	-	enoyl-CoA hydratase/isomerase
2469	 66.04	0	2778964..2779761	-	265	154246427	-	Xaut_2486	-	hypothetical protein
2470	 68.51	0	2779782..2780705	-	307	154246428	-	Xaut_2487	-	hypothetical protein
2471	 66.05	0	2780925..2782214	+	429	154246429	-	Xaut_2488	-	diguanylate cyclase
2472	 74.67	+1	2782230..2782904	-	224	154246430	-	Xaut_2489	-	peptidase C15 pyroglutamyl peptidase I
2473	 72.54	+1	2782914..2783900	-	328	154246431	-	Xaut_2490	-	arginine/ornithine transport system ATPase
2474	 57.00	-2	2783998..2784204	+	68	154246432	-	Xaut_2491	-	CsbD family protein
2475	 69.92	0	2784261..2784752	-	163	154246433	-	Xaut_2492	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2476	 65.31	0	2784749..2785189	-	146	154246434	-	Xaut_2493	-	dihydropteroate synthase
2477	 67.73	0	2785731..2786387	-	218	154246435	-	Xaut_2494	-	peptide methionine sulfoxide reductase
2478	 63.95	0	2787302..2787853	+	183	154246436	-	Xaut_2495	-	GCN5-related N-acetyltransferase
2479	 61.33	-1	2787906..2788448	+	180	154246437	-	Xaut_2496	-	inorganic pyrophosphatase
2480	 72.42	+1	2788562..2791240	-	892	154246438	-	Xaut_2497	-	molybdopterin oxidoreductase
2481	 71.09	0	2791274..2792902	-	542	154246439	-	Xaut_2498	-	sulfite reductase
2482	 69.28	0	2792984..2794744	-	586	154246440	-	Xaut_2499	-	ferredoxin-nitrite reductase
2483	 70.68	0	2794756..2795976	-	406	154246441	-	Xaut_2500	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2484	 69.50	0	2795987..2796409	-	140	154246442	-	Xaut_2501	-	globin
2485	 66.29	0	2796474..2797268	-	264	154246443	-	Xaut_2502	-	nitrate ABC transporter, ATPase subunits C and D
2486	 69.23	0	2797291..2798187	-	298	154246444	-	Xaut_2503	-	nitrate ABC transporter, inner membrane subunit
2487	 64.52	0	2798362..2799714	-	450	154246445	-	Xaut_2504	-	nitrate-binding protein nrtA precursor, periplasmic
2488	 70.90	0	2800093..2801226	-	377	154246446	-	Xaut_2505	-	putative nitrate transport protein
2489	 64.41	0	2801223..2801888	-	221	154246447	-	Xaut_2506	-	response regulator receiver/ANTAR domain-containing protein
2490	 74.25	+1	2801995..2803590	+	531	154246448	-	Xaut_2507	-	hypothetical protein
2491	 71.31	0	2803599..2804525	+	308	154246449	-	Xaut_2508	-	hypothetical protein
2492	 70.08	0	2804522..2805430	+	302	154246450	-	Xaut_2509	-	hypothetical protein
2493	 65.96	0	2805555..2805977	-	140	154246451	-	Xaut_2510	-	ribosomal protein L19
2494	 71.47	0	2806083..2806811	-	242	154246452	-	Xaut_2511	-	tRNA (guanine-N1)-methyltransferase
2495	 69.89	0	2806887..2807444	-	185	154246453	-	Xaut_2512	-	16S rRNA processing protein RimM
2496	 69.76	0	2807540..2808346	-	268	154246454	-	Xaut_2513	-	GntR family transcriptional regulator
2497	 66.03	0	2808472..2809095	+	207	154246455	-	Xaut_2514	-	tripartite ATP-independent periplasmic transporter DctQ
2498	 64.61	0	2809095..2810360	+	421	154246456	-	Xaut_2515	-	TRAP dicarboxylate transporter, DctM subunit
2499	 66.96	0	2810385..2811392	+	335	154246457	-	Xaut_2516	-	TRAP dicarboxylate transporter- DctP subunit
2500	 66.02	0	2811463..2812392	+	309	154246458	-	Xaut_2517	-	dihydrodipicolinate synthetase
2501	 69.83	0	2812672..2814123	+	483	154246459	-	Xaut_2518	-	FAD linked oxidase domain-containing protein
2502	 72.21	+1	2814322..2815566	-	414	154246460	-	Xaut_2519	-	major facilitator transporter
2503	 69.35	0	2815782..2817833	-	683	154246461	-	Xaut_2520	-	stage II sporulation E family protein
2504	 72.78	+1	2817833..2818666	-	277	154246462	-	Xaut_2521	-	hypothetical protein
2505	 69.48	0	2818656..2819402	-	248	154246463	-	Xaut_2522	-	hypothetical protein
2506	 70.06	0	2819547..2820431	+	294	154246464	-	Xaut_2523	-	hypothetical protein
2507	 72.86	+1	2820428..2822413	+	661	154246465	-	Xaut_2524	-	major facilitator transporter
2508	 69.50	0	2822413..2823471	+	352	154246466	-	Xaut_2525	-	ABC-type uncharacterized transport system, periplasmic component
2509	 70.63	0	2823471..2824151	+	226	154246467	-	Xaut_2526	-	hypothetical protein
2510	 67.12	0	2824673..2825116	+	147	154246468	-	Xaut_2527	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
2511	 69.76	0	2825411..2827060	+	549	154246469	-	Xaut_2528	-	Na+/H+ antiporter
2512	 64.69	0	2827044..2827346	+	100	154246470	-	Xaut_2529	-	anti-sigma-factor antagonist
2513	 71.34	0	2827403..2828494	-	363	154246471	-	Xaut_2530	-	lysine--tRNA ligase
2514	 61.75	-1	2828637..2829206	+	189	154246472	-	Xaut_2531	-	elongation factor P
2515	 66.19	0	2829398..2829814	+	138	154246473	-	Xaut_2532	-	response regulator receiver protein
2516	 69.72	0	2829943..2830596	-	217	154246474	-	Xaut_2533	-	ribulose-phosphate 3-epimerase
2517	 70.66	0	2830746..2831846	-	366	154246475	-	Xaut_2534	-	heat-inducible transcription repressor
2518	 67.65	0	2832104..2832817	+	237	154246476	-	Xaut_2535	-	ribonuclease PH
2519	 69.65	0	2832817..2833452	+	211	154246477	-	Xaut_2536	-	putative deoxyribonucleotide triphosphate pyrophosphatase
2520	 71.50	+1	2833536..2834735	+	399	154246478	-	Xaut_2537	-	putative oxygen-independent coproporphyrinogen III oxidase
2521	 73.12	+1	2834833..2835669	+	278	154246479	-	Xaut_2538	-	pyrroline-5-carboxylate reductase
2522	 70.37	0	2835703..2836431	+	242	154246480	-	Xaut_2539	-	TetR family transcriptional regulator
2523	 72.06	+1	2836433..2836933	+	166	154246481	-	Xaut_2540	-	hypothetical protein
2524	 63.64	0	2836970..2837299	-	109	154246482	-	Xaut_2541	-	hypothetical protein
2525	 70.51	0	2837464..2838270	-	268	154246483	-	Xaut_2542	-	putative PAS/PAC sensor protein
2526	 73.53	+1	2838558..2839271	+	237	154246484	-	Xaut_2543	-	hypothetical protein
2527	 67.83	0	2839282..2839539	+	85	154246485	-	Xaut_2544	-	hypothetical protein
2528	 69.14	0	2839603..2840979	+	458	154246486	-	Xaut_2545	-	GTP-binding protein EngA
2529	 63.07	-1	2841155..2841655	-	166	154246487	-	Xaut_2546	-	hypothetical protein
2530	 72.78	+1	2841990..2842316	-	108	154246488	-	Xaut_2547	-	hypothetical protein
2531	 68.99	0	2842569..2843387	+	272	154246489	-	Xaut_2548	-	prolipoprotein diacylglyceryl transferase
2532	 72.54	+1	2843384..2844490	+	368	154246490	-	Xaut_2549	-	hypothetical protein
2533	 69.92	0	2844501..2845268	+	255	154246491	-	Xaut_2550	-	hypothetical protein
2534	 71.74	+1	2845301..2845852	+	183	154246492	-	Xaut_2551	-	hypothetical protein
2535	 72.84	+1	2846041..2846736	+	231	154246493	-	Xaut_2552	-	hypothetical protein
2536	 66.35	0	2846954..2847907	+	317	154246494	-	Xaut_2553	-	ribose-phosphate pyrophosphokinase
2537	 60.89	-1	2848056..2848886	+	276	154246495	-	Xaut_2554	-	hypothetical protein
2538	 69.49	0	2848871..2849686	-	271	154246496	-	Xaut_2555	-	phosphoesterase PA-phosphatase related
2539	 66.00	0	2849847..2850740	-	297	154246497	-	Xaut_2556	-	branched-chain amino acid aminotransferase
2540	 68.48	0	2850950..2851501	+	183	154246498	-	Xaut_2557	-	MarR family transcriptional regulator
2541	 70.83	0	2851592..2852311	+	239	154246499	-	Xaut_2558	-	two component transcriptional regulator
2542	 67.97	0	2852314..2853696	+	460	154246500	-	Xaut_2559	-	integral membrane sensor signal transduction histidine kinase
2543	 70.72	0	2853742..2854653	+	303	154246501	-	Xaut_2560	-	tRNA nucleotidyltransferase/poly(A) polymerase family protein
2544	 68.40	0	2854717..2854947	+	76	154246502	-	Xaut_2561	-	SpoVT/AbrB domain-containing protein
2545	 66.67	0	2854947..2855354	+	135	154246503	-	Xaut_2562	-	PilT domain-containing protein
2546	 47.62	-2	2855443..2856030	-	195	154246504	-	Xaut_2563	-	hypothetical protein
2547	 71.91	+1	2856119..2857414	-	431	154246505	-	Xaut_2564	-	hypothetical protein
2548	 71.66	+1	2857420..2858421	-	333	154246506	-	Xaut_2565	-	ribokinase-like domain-containing protein
2549	 67.81	0	2858686..2860086	+	466	154246507	-	Xaut_2566	-	phosphoglucosamine mutase
2550	 68.50	0	2860181..2860891	+	236	154246508	-	Xaut_2567	-	opacity protein and related surface antigens-like protein
2551	 70.10	0	2860923..2861330	-	135	154246509	-	Xaut_2568	-	response regulator receiver protein
2552	 66.67	0	2861330..2861728	-	132	154246510	-	Xaut_2569	-	response regulator receiver protein
2553	 66.89	0	2861943..2862398	+	151	154246511	-	Xaut_2570	-	3-dehydroquinate dehydratase
2554	 69.90	0	2862395..2863354	+	319	154246512	-	Xaut_2571	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
2555	 67.14	0	2863397..2863819	-	140	154246513	-	Xaut_2572	-	DGPFAETKE family protein
2556	 68.85	0	2863908..2864870	-	320	154246514	-	Xaut_2573	-	LysR family transcriptional regulator
2557	 65.09	0	2865106..2866560	+	484	154246515	-	Xaut_2574	-	4-hydroxyphenylacetate 3-hydroxylase
2558	 71.18	0	2866557..2867066	+	169	154246516	-	Xaut_2575	-	flavin reductase domain-containing protein
2559	 65.00	0	2867077..2867496	+	139	154246517	-	Xaut_2576	-	endoribonuclease L-PSP
2560	 63.47	-1	2867877..2868908	+	343	154246518	-	Xaut_2577	-	extracellular solute-binding protein
2561	 65.61	0	2869119..2869970	+	283	154246519	-	Xaut_2578	-	binding-protein-dependent transport systems inner membrane component
2562	 66.19	0	2869970..2870803	+	277	154246520	-	Xaut_2579	-	binding-protein-dependent transport systems inner membrane component
2563	 68.99	0	2870832..2871950	+	372	154246521	-	Xaut_2580	-	spermidine/putrescine ABC transporter ATPase subunit
2564	 75.08	+1	2872198..2872851	-	217	154246522	-	Xaut_2581	-	hypothetical protein
2565	 69.85	0	2872890..2874083	+	397	154246523	-	Xaut_2582	-	acetylornithine deacetylase (ArgE)
2566	 70.37	0	2874112..2874543	+	143	154246524	-	Xaut_2583	-	hypothetical protein
2567	 68.92	0	2874678..2875919	+	413	154246525	-	Xaut_2584	-	arginine biosynthesis bifunctional protein ArgJ
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.