IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
189	 72.13	+1	189946..191556	-	536	154244147	-	Xaut_0189	-	gamma-glutamyltransferase
190	 66.28	0	191770..192027	+	85	154244148	-	Xaut_0190	-	hypothetical protein
191	 72.32	+1	192034..192687	-	217	154244149	-	Xaut_0191	-	nitroreductase
192	 69.56	0	193225..193950	+	241	154244150	-	Xaut_0192	-	cold-shock DNA-binding domain-containing protein
193	 60.15	-1	193987..194247	+	86	154244151	-	Xaut_0193	-	hypothetical protein
194	 67.12	0	194546..195418	+	290	154244152	-	Xaut_0194	-	exodeoxyribonuclease III Xth
195	 72.65	+1	195405..196139	-	244	154244153	-	Xaut_0195	-	hypothetical protein
196	 72.02	+1	196556..198088	+	510	154244154	-	Xaut_0196	-	histidine kinase
197	 65.32	0	198212..199252	+	346	154244155	-	Xaut_0197	-	phosphate ABC transporter, periplasmic phosphate-binding protein
198	 65.64	0	199429..200406	+	325	154244156	-	Xaut_0198	-	phosphate ABC transporter, inner membrane subunit PstC
199	 69.18	0	200424..201257	+	277	154244157	-	Xaut_0199	-	phosphate ABC transporter, inner membrane subunit PstA
200	 63.88	0	201320..202144	+	274	154244158	-	Xaut_0200	-	phosphate ABC transporter, ATPase subunit
201	 64.61	0	202266..202994	+	242	154244159	-	Xaut_0201	-	phosphate uptake regulator, PhoU
202	 68.95	0	203078..203779	+	233	154244160	-	Xaut_0202	-	two component transcriptional regulator
203	 73.24	+1	204084..205436	-	450	154244161	-	Xaut_0203	-	amine oxidase
204	 71.48	0	205521..206912	-	463	154244162	-	Xaut_0204	-	amine oxidase
205	 74.33	+1	206967..207893	-	308	154244163	-	Xaut_0205	-	polyprenyl synthetase
206	 69.35	0	208071..208742	+	223	154244164	-	Xaut_0206	-	monofunctional biosynthetic peptidoglycan transglycosylase
207	 64.46	0	208872..209459	+	195	154244165	-	Xaut_0207	-	intracellular septation protein A
208	 63.98	0	209554..210000	+	148	154244166	-	Xaut_0208	-	BadM/Rrf2 family transcriptional regulator
209	 67.51	0	210021..211202	-	393	154244167	-	Xaut_0209	-	ABC-2 type transporter
210	 68.45	0	211204..213954	-	916	154244168	-	Xaut_0210	-	ABC transporter related
211	 70.48	0	213966..214961	-	331	154244169	-	Xaut_0211	-	secretion protein HlyD family protein
212	 69.30	0	215116..215913	-	265	154244170	-	Xaut_0212	-	hypothetical protein
213	 66.67	0	215965..216426	-	153	154244171	-	Xaut_0213	-	AsnC family transcriptional regulator
214	 70.77	0	216589..219048	+	819	154244172	-	Xaut_0214	-	pyruvate dehydrogenase (acetyl-transferring)
215	 64.13	0	219645..221297	+	550	154244173	-	Xaut_0215	-	integrase family protein
216	 59.26	-2	221574..222410	-	278	154244174	-	Xaut_0216	-	hypothetical protein
217	 62.71	-1	222998..224008	+	336	154244175	-	Xaut_0217	-	hypothetical protein
218	 62.22	-1	224108..224332	+	74	154244176	-	Xaut_0218	-	putative addiction module antidote
219	 63.93	0	224329..224766	+	145	154244177	-	Xaut_0219	-	death-on-curing family protein
220	 64.04	0	225848..226114	+	88	154244178	-	Xaut_0220	-	transposase IS3/IS911 family protein
221	 66.32	0	226165..227037	+	290	154244179	-	Xaut_0221	-	integrase catalytic region
222	 59.47	-2	227174..228715	+	513	154244180	-	Xaut_0222	-	hypothetical protein
223	 59.99	-1	228702..230738	+	678	154244181	-	Xaut_0223	-	hypothetical protein
224	 64.46	0	231267..232217	-	316	154244182	-	Xaut_0225	-	hypothetical protein
225	 63.06	-1	232293..232874	-	193	154244183	-	Xaut_0226	-	hypothetical protein
226	 62.31	-1	232874..233470	-	198	154244184	-	Xaut_0227	-	hypothetical protein
227	 49.10	-2	233677..235788	-	703	154244185	-	Xaut_0228	-	hypothetical protein
228	 50.18	-2	235785..236888	-	367	154244186	-	Xaut_0229	-	hypothetical protein
229	 66.57	0	237404..238471	-	355	154244187	-	Xaut_0230	-	peptidase C14 caspase catalytic subunit p20
230	 71.11	0	238501..240975	-	824	154244188	-	Xaut_0231	-	hypothetical protein
231	 69.68	0	240993..241823	-	276	154244189	-	Xaut_0232	-	hypothetical protein
232	 71.51	+1	242283..243686	-	467	154244190	-	Xaut_0233	-	LigA
233	 60.83	-1	244478..245248	-	256	154244191	-	Xaut_0234	-	protein of unknown function DUF900 hydrolase family protein
234	 62.56	-1	245252..245884	+	210	154244192	-	Xaut_0235	-	hypothetical protein
235	 63.51	-1	246238..247347	-	369	154244193	-	Xaut_0236	-	hypothetical protein
236	 65.58	0	247364..248287	-	307	154244194	-	Xaut_0237	-	hypothetical protein
237	 66.42	0	248364..249158	+	264	154244195	-	Xaut_0238	-	hypothetical protein
238	 71.47	0	249162..250451	+	429	154244196	-	Xaut_0239	-	hypothetical protein
239	 71.78	+1	250477..251004	+	175	154244197	-	Xaut_0240	-	hypothetical protein
240	 68.78	0	251009..251386	+	125	154244198	-	Xaut_0241	-	hypothetical protein
241	 68.87	0	251386..251703	+	105	154244199	-	Xaut_0242	-	hypothetical protein
242	 66.81	0	251703..253106	+	467	154244200	-	Xaut_0243	-	Type IV secretory pathway VirD4 protein-like protein
243	 67.41	0	253103..253372	+	89	154244201	-	Xaut_0244	-	hypothetical protein
244	 68.53	0	253694..254176	+	160	154244202	-	Xaut_0245	-	hypothetical protein
245	 65.47	0	254290..254955	+	221	154244203	-	Xaut_0246	-	hypothetical protein
246	 64.35	0	254969..255313	+	114	154244204	-	Xaut_0247	-	hypothetical protein
247	 64.38	0	255310..256884	+	524	154244205	-	Xaut_0248	-	resolvase domain-containing protein
248	 65.41	0	256999..257397	+	132	154244206	-	Xaut_0249	-	ISBm1, transposase orfA
249	 61.54	-1	257373..257801	+	142	154244207	-	Xaut_0250	-	transposase IS4 family protein
250	 63.61	0	258268..258954	-	228	154244208	-	Xaut_0251	-	putative transposase
251	 64.44	0	258983..259162	+	59	154244209	-	Xaut_0252	-	hypothetical protein
252	 56.65	-2	259356..259874	+	172	154244210	-	Xaut_0253	-	ECF subfamily RNA polymerase sigma-24 factor
253	 63.10	-1	259864..260676	+	270	154244211	-	Xaut_0254	-	putative transmembrane anti-sigma factor
254	 62.32	-1	260763..261980	+	405	154244212	-	Xaut_0255	-	oxidoreductase molybdopterin binding
255	 53.57	-2	261970..262305	+	111	154244213	-	Xaut_0256	-	putative sulfite:cytochrome c oxidoreductase subunit B
256	 57.27	-2	262308..262754	+	148	154244214	-	Xaut_0257	-	cytochrome c class I
257	 61.79	-1	262851..263834	-	327	154244215	-	Xaut_0258	-	malate dehydrogenase
258	 61.54	-1	263867..264334	-	155	154244216	-	Xaut_0259	-	hypothetical protein
259	 61.17	-1	264470..265906	-	478	154244217	-	Xaut_0260	-	YVTN beta-propeller repeat-containing protein
260	 59.38	-2	265951..266334	-	127	154244218	-	Xaut_0261	-	hypothetical protein
261	 63.62	0	266509..266934	+	141	154244219	-	Xaut_0262	-	hypothetical protein
262	 60.95	-1	267010..267516	+	168	154244220	-	Xaut_0263	-	ECF subfamily RNA polymerase sigma-24 factor
263	 63.80	0	267513..268313	+	266	154244221	-	Xaut_0264	-	putative transmembrane anti-sigma factor
264	 61.59	-1	268415..269497	+	360	154244222	-	Xaut_0265	-	hypothetical protein
265	 62.53	-1	269508..270449	+	313	154244223	-	Xaut_0266	-	LysR family transcriptional regulator
266	 54.17	-2	270433..270744	+	103	154244224	-	Xaut_0267	-	cytochrome bd-type quinol oxidase subunit 1-like protein
267	 65.05	0	270977..272029	-	350	154244225	-	Xaut_0268	-	transposase IS116/IS110/IS902 family protein
268	 63.43	-1	272157..272465	+	102	154244226	-	Xaut_0269	-	hypothetical protein
269	 64.42	0	272961..273227	-	88	154244227	-	Xaut_0270	-	conjugal transfer TraD family protein
270	 68.14	0	273229..273567	-	112	154244228	-	Xaut_0271	-	putative conjugal transfert protein, TraC
271	 66.97	0	273727..276657	+	976	154244229	-	Xaut_0272	-	Ti-type conjugative transfer relaxase TraA
272	 64.35	0	276787..277002	+	71	154244230	-	Xaut_0273	-	phage transcriptional regulator, AlpA
273	 63.41	-1	276995..277240	+	81	154244231	-	Xaut_0274	-	hypothetical protein
274	 59.60	-1	277302..277598	+	98	154244232	-	Xaut_0275	-	plasmid maintenance system killer
275	 65.05	0	277612..277920	+	102	154244233	-	Xaut_0276	-	XRE family plasmid maintenance system antidote protein
276	 65.22	0	277976..279631	+	551	154244234	-	Xaut_0277	-	resolvase domain-containing protein
277	 69.24	0	280130..280828	-	232	154244235	-	Xaut_0278	-	alanine racemase domain-containing protein
278	 69.31	0	281048..282712	+	554	154244236	-	Xaut_0279	-	diguanylate cyclase
279	 73.57	+1	282730..283569	-	279	154244237	-	Xaut_0280	-	NLP/P60 protein
280	 73.32	+1	283682..285049	-	455	154244238	-	Xaut_0281	-	leucyl aminopeptidase
281	 69.60	0	285228..285704	-	158	154244239	-	Xaut_0282	-	peptidase A24A prepilin type IV
282	 65.45	0	285724..285888	-	54	154244240	-	Xaut_0283	-	Flp/Fap pilin component
283	 68.32	0	286187..289096	+	969	154244241	-	Xaut_0284	-	PII uridylyl-transferase
284	 70.16	0	289140..290198	+	352	154244242	-	Xaut_0285	-	aminoglycoside phosphotransferase
285	 59.81	-1	290226..290750	-	174	154244243	-	Xaut_0286	-	rubrerythrin
286	 60.66	-1	290785..291150	-	121	154244244	-	Xaut_0287	-	ferredoxin
287	 67.17	0	291508..293700	-	730	154244245	-	Xaut_0288	-	polynucleotide phosphorylase/polyadenylase
288	 61.11	-1	293982..294251	-	89	154244246	-	Xaut_0289	-	ribosomal protein S15
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.