IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1989	 72.25	+1	2260300..2260944	+	214	154245947	-	Xaut_2004	-	cobalt transport protein
1990	 74.28	+1	2260955..2261506	+	183	154245948	-	Xaut_2005	-	BioY protein
1991	 73.02	+1	2261503..2262966	+	487	154245949	-	Xaut_2006	-	AMP-dependent synthetase and ligase
1992	 74.98	+1	2262963..2264093	+	376	154245950	-	Xaut_2007	-	acetyl-CoA acetyltransferase
1993	 71.19	0	2264097..2265002	+	301	154245951	-	Xaut_2008	-	hypothetical protein
1994	 68.60	0	2265353..2267164	+	603	154245952	-	Xaut_2009	-	poly-beta-hydroxybutyrate polymerase domain-containing protein
1995	 72.36	+1	2267184..2268167	-	327	154245953	-	Xaut_2010	-	alcohol dehydrogenase zinc-binding type 2
1996	 67.08	0	2268358..2269335	-	325	154245954	-	Xaut_2011	-	hypothetical protein
1997	 74.87	+1	2269447..2271336	+	629	154245955	-	Xaut_2012	-	heavy metal translocating P-type ATPase
1998	 65.53	0	2271459..2272688	-	409	154245956	-	Xaut_2013	-	argininosuccinate synthase
1999	 69.74	0	2272734..2273579	-	281	154245957	-	Xaut_2014	-	phosphoesterase, PA-phosphatase related
2000	 69.43	0	2273644..2274258	+	204	154245958	-	Xaut_2015	-	DSBA oxidoreductase
2001	 67.44	0	2274270..2275169	+	299	154245959	-	Xaut_2016	-	ubiquinone/menaquinone biosynthesis methyltransferase
2002	 70.17	0	2275189..2276760	+	523	154245960	-	Xaut_2017	-	2-polyprenylphenol 6-hydroxylase
2003	 71.74	+1	2276801..2277568	-	255	154245961	-	Xaut_2018	-	methyltransferase type 11
2004	 70.20	0	2277662..2278510	+	282	154245962	-	Xaut_2019	-	hydroxyacylglutathione hydrolase
2005	 73.98	+1	2278514..2278978	+	154	154245963	-	Xaut_2020	-	hypothetical protein
2006	 69.05	0	2279217..2279762	-	181	154245964	-	Xaut_2021	-	ECF subfamily RNA polymerase sigma-24 factor
2007	 68.81	0	2280135..2280461	-	108	154245965	-	Xaut_2022	-	hypothetical protein
2008	 69.29	0	2280709..2282499	-	596	154245966	-	Xaut_2023	-	signal transduction histidine kinase
2009	 67.17	0	2282795..2283586	+	263	154245967	-	Xaut_2024	-	two-component response regulator
2010	 69.00	0	2283763..2284062	+	99	154245968	-	Xaut_2025	-	hypothetical protein
2011	 69.78	0	2284111..2287005	-	964	154245969	-	Xaut_2026	-	multi-sensor hybrid histidine kinase
2012	 68.40	0	2287422..2287940	-	172	154245970	-	Xaut_2027	-	PRC-barrel domain-containing protein
2013	 66.25	0	2288263..2288742	+	159	154245971	-	Xaut_2028	-	hypothetical protein
2014	 72.09	+1	2288726..2289592	+	288	154245972	-	Xaut_2029	-	glutamine amidotransferase
2015	 69.26	0	2289719..2290642	+	307	154245973	-	Xaut_2030	-	xylose isomerase domain-containing protein
2016	 68.05	0	2290756..2292489	+	577	154245974	-	Xaut_2031	-	ferredoxin-dependent glutamate synthase
2017	 65.26	0	2292641..2293066	+	141	154245975	-	Xaut_2032	-	heat shock protein Hsp20
2018	 67.41	0	2293107..2293376	+	89	154245976	-	Xaut_2033	-	hypothetical protein
2019	 66.02	0	2293495..2293959	-	154	154245977	-	Xaut_2034	-	PTS IIA-like nitrogen-regulatory protein PtsN
2020	 65.81	0	2294293..2294874	-	193	154245978	-	Xaut_2035	-	sigma 54 modulation protein/ribosomal protein S30EA
2021	 66.49	0	2295059..2295640	-	193	154245979	-	Xaut_2036	-	cytochrome B561
2022	 70.55	0	2295576..2296424	-	282	154245980	-	Xaut_2037	-	deaminase-reductase domain-containing protein
2023	 71.79	+1	2296510..2297622	+	370	154245981	-	Xaut_2038	-	GTP cyclohydrolase
2024	 67.86	0	2297737..2298489	+	250	154245982	-	Xaut_2039	-	short-chain dehydrogenase/reductase SDR
2025	 69.15	0	2298544..2299107	-	187	154245983	-	Xaut_2040	-	cupin 2, barrel
2026	 67.77	0	2299175..2300167	-	330	154245984	-	Xaut_2041	-	transketolase central region
2027	 69.02	0	2300186..2301121	-	311	154245985	-	Xaut_2042	-	transketolase domain-containing protein
2028	 62.34	-1	2301331..2302116	-	261	154245986	-	Xaut_2043	-	hypothetical protein
2029	 67.23	0	2302313..2303206	+	297	154245987	-	Xaut_2044	-	hypothetical protein
2030	 70.11	0	2303209..2304138	-	309	154245988	-	Xaut_2045	-	hypothetical protein
2031	 71.88	+1	2304274..2305137	+	287	154245989	-	Xaut_2046	-	LysR family transcriptional regulator
2032	 70.28	0	2305161..2306102	-	313	154245990	-	Xaut_2047	-	glucokinase
2033	 68.79	0	2306694..2307446	+	250	154245991	-	Xaut_2048	-	import inner membrane translocase subunit Tim44
2034	 71.70	+1	2307613..2308803	+	396	154245992	-	Xaut_2049	-	MltA domain-containing protein
2035	 73.94	+1	2308800..2309390	+	196	154245993	-	Xaut_2050	-	Smr protein/MutS2
2036	 72.18	+1	2309410..2310117	-	235	154245994	-	Xaut_2051	-	metallophosphoesterase
2037	 69.91	0	2310191..2310652	-	153	154245995	-	Xaut_2052	-	NUDIX hydrolase
2038	 72.34	+1	2310675..2312858	-	727	154245996	-	Xaut_2053	-	primosome assembly protein PriA
2039	 67.95	0	2313010..2314020	+	336	154245997	-	Xaut_2054	-	amidohydrolase 2
2040	 68.50	0	2314070..2315104	+	344	154245998	-	Xaut_2055	-	GTP-binding protein Obg/CgtA
2041	 71.49	+1	2315265..2316425	+	386	154245999	-	Xaut_2056	-	gamma-glutamyl kinase
2042	 68.55	0	2316439..2317287	-	282	154246000	-	Xaut_2057	-	FG-GAP repeat-containing protein
2043	 70.74	0	2317448..2318821	+	457	154246001	-	Xaut_2058	-	gamma-glutamyl phosphate reductase
2044	 72.08	+1	2318818..2319501	+	227	154246002	-	Xaut_2059	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
2045	 65.97	0	2319545..2319973	+	142	154246003	-	Xaut_2060	-	iojap-like protein
2046	 72.88	+1	2320004..2320486	+	160	154246004	-	Xaut_2061	-	hypothetical protein
2047	 62.70	-1	2320613..2320738	+	41	154246005	-	Xaut_2062	-	ribosomal protein L36
2048	 69.40	0	2320915..2321646	+	243	154246006	-	Xaut_2063	-	TPR repeat-containing protein
2049	 67.21	0	2321673..2322221	-	182	154246007	-	Xaut_2064	-	hypothetical protein
2050	 72.87	+1	2322257..2323255	-	332	154246008	-	Xaut_2065	-	hypothetical protein
2051	 61.36	-1	2323594..2323857	+	87	154246009	-	Xaut_2066	-	hypothetical protein
2052	 70.51	0	2323938..2325446	-	502	154246010	-	Xaut_2067	-	hypothetical protein
2053	 70.38	0	2325813..2327831	-	672	154246011	-	Xaut_2068	-	peptidoglycan binding domain-containing protein
2054	 72.55	+1	2327927..2328691	-	254	154246012	-	Xaut_2069	-	two component Fis family transcriptional regulator
2055	 66.88	0	2328913..2330817	+	634	154246013	-	Xaut_2070	-	pepF/M3 family oligoendopeptidase
2056	 71.27	0	2330971..2332404	+	477	154246014	-	Xaut_2071	-	peptidase M23B
2057	 65.71	0	2332401..2333762	+	453	154246015	-	Xaut_2072	-	carboxyl-terminal protease
2058	 64.81	0	2334030..2334839	+	269	154246016	-	Xaut_2073	-	extracellular solute-binding protein
2059	 68.00	0	2335039..2335713	+	224	154246017	-	Xaut_2074	-	polar amino acid ABC transporter, inner membrane subunit
2060	 65.61	0	2335710..2336369	+	219	154246018	-	Xaut_2075	-	polar amino acid ABC transporter, inner membrane subunit
2061	 65.56	0	2336347..2337072	+	241	154246019	-	Xaut_2076	-	ABC transporter related
2062	 64.19	0	2337258..2337863	+	201	154246020	-	Xaut_2077	-	ATP synthase F1, delta subunit
2063	 65.82	0	2337863..2339392	+	509	154246021	-	Xaut_2078	-	ATP synthase F1, alpha subunit
2064	 65.30	0	2339429..2340304	+	291	154246022	-	Xaut_2079	-	F0F1 ATP synthase subunit gamma
2065	 67.22	0	2340353..2341789	+	478	154246023	-	Xaut_2080	-	F0F1 ATP synthase subunit beta
2066	 67.51	0	2341912..2342268	-	118	154246024	-	Xaut_2081	-	hypothetical protein
2067	 68.57	0	2342316..2342735	+	139	154246025	-	Xaut_2082	-	ATP synthase F1, epsilon subunit
2068	 66.02	0	2342977..2343753	+	258	154246026	-	Xaut_2083	-	CRP/FNR family transcriptional regulator
2069	 63.85	0	2343934..2345388	+	484	154246027	-	Xaut_2084	-	ABC transporter substrate-binding protein
2070	 66.88	0	2345394..2346353	+	319	154246028	-	Xaut_2085	-	binding-protein-dependent transport systems inner membrane component
2071	 67.69	0	2346371..2347246	+	291	154246029	-	Xaut_2086	-	ABC transporter related
2072	 67.22	0	2347357..2347719	+	120	154246030	-	Xaut_2087	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2073	 66.41	0	2347730..2348503	+	257	154246031	-	Xaut_2088	-	oxidoreductase FAD/NAD(P)-binding subunit
2074	 68.73	0	2348645..2349712	+	355	154246032	-	Xaut_2089	-	hypothetical protein
2075	 73.35	+1	2349905..2350861	+	318	154246033	-	Xaut_2090	-	LysR family transcriptional regulator
2076	 69.48	0	2350830..2352713	-	627	154246034	-	Xaut_2091	-	ABC transporter related
2077	 70.27	0	2352789..2353565	-	258	154246035	-	Xaut_2092	-	hypothetical protein
2078	 69.05	0	2353572..2354663	-	363	154246036	-	Xaut_2093	-	succinyl-diaminopimelate desuccinylase
2079	 70.58	0	2354962..2357544	+	860	154246037	-	Xaut_2094	-	MscS mechanosensitive ion channel
2080	 67.96	0	2357709..2358251	+	180	154246038	-	Xaut_2095	-	SCP-like extracellular
2081	 70.86	0	2358370..2359968	+	532	154246039	-	Xaut_2096	-	AMP-dependent synthetase and ligase
2082	 62.55	-1	2360154..2360396	+	80	154246040	-	Xaut_2097	-	hypothetical protein
2083	 72.65	+1	2360393..2360626	+	77	154246041	-	Xaut_2098	-	hypothetical protein
2084	 67.57	0	2360640..2360972	-	110	154246042	-	Xaut_2099	-	hypothetical protein
2085	 71.55	+1	2361074..2361544	+	156	154246043	-	Xaut_2100	-	hypothetical protein
2086	 63.69	0	2361618..2362088	+	156	154246044	-	Xaut_2101	-	activator of Hsp90 ATPase 1 family protein
2087	 66.67	0	2362208..2362426	+	72	154246045	-	Xaut_2102	-	hypothetical protein
2088	 68.47	0	2362532..2363251	+	239	154246046	-	Xaut_2103	-	TetR family transcriptional regulator
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.