IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
121	 64.13	0	122130..122444	+	104	154244079	-	Xaut_0121	-	putative ferredoxin, 2Fe-2S
122	 64.44	0	122670..122894	+	74	154244080	-	Xaut_0122	-	hypothetical protein
123	 64.56	0	123228..123560	-	110	154244081	-	Xaut_0123	-	glutaredoxin-like protein
124	 64.10	0	123633..123866	-	77	154244082	-	Xaut_0124	-	BolA family protein
125	 67.08	0	124028..124987	+	319	154244083	-	Xaut_0125	-	hypothetical protein
126	 65.62	0	125030..125509	+	159	154244084	-	Xaut_0126	-	hypothetical protein
127	 59.60	-1	125612..126007	+	131	154244085	-	Xaut_0127	-	hypothetical protein
128	 64.21	0	126108..126392	-	94	154244086	-	Xaut_0128	-	hypothetical protein
129	 66.67	0	126431..127090	-	219	154244087	-	Xaut_0129	-	glutathione S-transferase domain-containing protein
130	 64.00	0	127288..127737	+	149	154244088	-	Xaut_0130	-	Rieske (2Fe-2S) domain-containing protein
131	 64.20	0	127783..128106	+	107	154244089	-	Xaut_0131	-	hypothetical protein
132	 68.28	0	128388..128822	+	144	154244090	-	Xaut_0132	-	globin
133	 61.67	-1	128879..129118	-	79	154244091	-	Xaut_0133	-	hypothetical protein
134	 62.87	-1	129246..129614	-	122	154244092	-	Xaut_0134	-	hypothetical protein
135	 65.64	0	129749..130234	+	161	154244093	-	Xaut_0135	-	hypothetical protein
136	 65.76	0	130509..130838	-	109	154244094	-	Xaut_0136	-	hypothetical protein
137	 64.69	0	131123..131881	-	252	154244095	-	Xaut_0137	-	dienelactone hydrolase
138	 68.23	0	132149..132916	-	255	154244096	-	Xaut_0138	-	LRV FeS4 cluster domain-containing protein
139	 64.67	0	133158..133457	-	99	154244097	-	Xaut_0139	-	putative ferredoxin protein, FixX
140	 62.23	-1	133567..134874	-	435	154244098	-	Xaut_0140	-	electron-transferring-flavoprotein dehydrogenase
141	 66.13	0	134887..135996	-	369	154244099	-	Xaut_0141	-	electron transfer flavoprotein alpha/beta-subunit
142	 67.61	0	136031..136879	-	282	154244100	-	Xaut_0142	-	electron transfer flavoprotein alpha/beta-subunit
143	 63.38	-1	137497..138378	-	293	154244101	-	Xaut_0143	-	nitrogenase reductase
144	 66.44	0	138962..139396	+	144	154244102	-	Xaut_0144	-	response regulator receiver protein
145	 72.45	+1	139403..139834	+	143	154244103	-	Xaut_0145	-	nitrogenase-associated protein
146	 70.14	0	139838..141508	+	556	154244104	-	Xaut_0146	-	hypothetical protein
147	 67.42	0	141529..142320	+	263	154244105	-	Xaut_0147	-	rhodanese domain-containing protein
148	 70.94	0	142434..143276	+	280	154244106	-	Xaut_0148	-	modD protein
149	 63.55	0	143614..143934	+	106	154244107	-	Xaut_0149	-	HesB/YadR/YfhF-family protein
150	 70.03	0	144010..145257	+	415	154244108	-	Xaut_0150	-	homocitrate synthase
151	 69.76	0	145261..146037	+	258	154244109	-	Xaut_0151	-	serine O-acetyltransferase
152	 60.53	-1	146079..146420	+	113	154244110	-	Xaut_0152	-	nitrogen fixation protein NifW
153	 67.81	0	147393..148358	+	321	154244111	-	Xaut_0153	-	malate dehydrogenase, NAD-dependent
154	 63.67	0	148592..149794	+	400	154244112	-	Xaut_0154	-	succinyl-CoA synthetase, beta subunit
155	 68.25	0	149794..150678	+	294	154244113	-	Xaut_0155	-	succinyl-CoA synthetase, alpha subunit
156	 65.96	0	151034..153988	+	984	154244114	-	Xaut_0156	-	alpha-ketoglutarate decarboxylase
157	 69.88	0	153998..154339	+	113	154244115	-	Xaut_0157	-	YCII-related
158	 69.43	0	154367..155596	+	409	154244116	-	Xaut_0158	-	2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
159	 67.17	0	155918..157321	+	467	154244117	-	Xaut_0159	-	dihydrolipoamide dehydrogenase
160	 65.14	0	157480..157872	-	130	154244118	-	Xaut_0160	-	HxlR family transcriptional regulator
161	 70.03	0	157963..158913	+	316	154244119	-	Xaut_0161	-	NADP oxidoreductase coenzyme F420-dependent
162	 72.22	+1	158926..159375	-	149	154244120	-	Xaut_0162	-	glyoxalase/bleomycin resistance protein/dioxygenase
163	 74.25	+1	159440..160468	-	342	154244121	-	Xaut_0163	-	integrase family protein
164	 68.33	0	160684..161286	+	200	154244122	-	Xaut_0164	-	PadR-like family transcriptional regulator
165	 71.04	0	161493..161789	+	98	154244123	-	Xaut_0165	-	helix-turn-helix domain-containing protein
166	 70.63	0	161793..163838	+	681	154244124	-	Xaut_0166	-	hydrogenase 4 subunit B
167	 68.45	0	163829..164782	+	317	154244125	-	Xaut_0167	-	respiratory-chain NADH dehydrogenase, subunit 1
168	 66.81	0	164782..165462	+	226	154244126	-	Xaut_0168	-	putative hydrogenase-4 component E
169	 67.62	0	165459..166919	+	486	154244127	-	Xaut_0169	-	hydrogenase 4 subunit F
170	 71.51	+1	166929..168434	+	501	154244128	-	Xaut_0170	-	NADH-ubiquinone oxidoreductase chain 49kDa
171	 70.96	0	168444..168956	+	170	154244129	-	Xaut_0171	-	NADH ubiquinone oxidoreductase 20 kDa subunit
172	 67.20	0	168970..169905	-	311	154244130	-	Xaut_0172	-	GntR family transcriptional regulator
173	 70.57	0	170122..171273	+	383	154244131	-	Xaut_0173	-	mannitol dehydrogenase domain-containing protein
174	 64.47	0	171270..171953	+	227	154244132	-	Xaut_0174	-	polar amino acid ABC transporter, inner membrane subunit
175	 63.46	-1	171966..172619	+	217	154244133	-	Xaut_0175	-	polar amino acid ABC transporter, inner membrane subunit
176	 66.80	0	172603..173331	+	242	154244134	-	Xaut_0176	-	ABC transporter related
177	 64.80	0	173389..174192	+	267	154244135	-	Xaut_0177	-	extracellular solute-binding protein
178	 67.85	0	174277..175287	+	336	154244136	-	Xaut_0178	-	alcohol dehydrogenase
179	 68.18	0	175294..176817	+	507	154244137	-	Xaut_0179	-	galactarate dehydratase
180	 65.62	0	176949..179444	+	831	154244138	-	Xaut_0180	-	alpha/beta hydrolase fold
181	 66.88	0	179453..180394	+	313	154244139	-	Xaut_0181	-	alpha/beta hydrolase fold
182	 68.53	0	180435..181454	-	339	154244140	-	Xaut_0182	-	aminoglycoside phosphotransferase
183	 68.07	0	181451..182665	-	404	154244141	-	Xaut_0183	-	acyl-CoA dehydrogenase domain-containing protein
184	 67.22	0	182932..184014	-	360	154244142	-	Xaut_0184	-	hypothetical protein
185	 67.51	0	184257..186143	-	628	154244143	-	Xaut_0185	-	K potassium transporter
186	 65.81	0	186746..188143	-	465	154244144	-	Xaut_0186	-	S-adenosyl-L-homocysteine hydrolase
187	 61.51	-1	188654..189274	+	206	154244145	-	Xaut_0187	-	CarD family transcriptional regulator
188	 66.42	0	189389..189787	+	132	154244146	-	Xaut_0188	-	hypothetical protein
189	 72.13	+1	189946..191556	-	536	154244147	-	Xaut_0189	-	gamma-glutamyltransferase
190	 66.28	0	191770..192027	+	85	154244148	-	Xaut_0190	-	hypothetical protein
191	 72.32	+1	192034..192687	-	217	154244149	-	Xaut_0191	-	nitroreductase
192	 69.56	0	193225..193950	+	241	154244150	-	Xaut_0192	-	cold-shock DNA-binding domain-containing protein
193	 60.15	-1	193987..194247	+	86	154244151	-	Xaut_0193	-	hypothetical protein
194	 67.12	0	194546..195418	+	290	154244152	-	Xaut_0194	-	exodeoxyribonuclease III Xth
195	 72.65	+1	195405..196139	-	244	154244153	-	Xaut_0195	-	hypothetical protein
196	 72.02	+1	196556..198088	+	510	154244154	-	Xaut_0196	-	histidine kinase
197	 65.32	0	198212..199252	+	346	154244155	-	Xaut_0197	-	phosphate ABC transporter, periplasmic phosphate-binding protein
198	 65.64	0	199429..200406	+	325	154244156	-	Xaut_0198	-	phosphate ABC transporter, inner membrane subunit PstC
199	 69.18	0	200424..201257	+	277	154244157	-	Xaut_0199	-	phosphate ABC transporter, inner membrane subunit PstA
200	 63.88	0	201320..202144	+	274	154244158	-	Xaut_0200	-	phosphate ABC transporter, ATPase subunit
201	 64.61	0	202266..202994	+	242	154244159	-	Xaut_0201	-	phosphate uptake regulator, PhoU
202	 68.95	0	203078..203779	+	233	154244160	-	Xaut_0202	-	two component transcriptional regulator
203	 73.24	+1	204084..205436	-	450	154244161	-	Xaut_0203	-	amine oxidase
204	 71.48	0	205521..206912	-	463	154244162	-	Xaut_0204	-	amine oxidase
205	 74.33	+1	206967..207893	-	308	154244163	-	Xaut_0205	-	polyprenyl synthetase
206	 69.35	0	208071..208742	+	223	154244164	-	Xaut_0206	-	monofunctional biosynthetic peptidoglycan transglycosylase
207	 64.46	0	208872..209459	+	195	154244165	-	Xaut_0207	-	intracellular septation protein A
208	 63.98	0	209554..210000	+	148	154244166	-	Xaut_0208	-	BadM/Rrf2 family transcriptional regulator
209	 67.51	0	210021..211202	-	393	154244167	-	Xaut_0209	-	ABC-2 type transporter
210	 68.45	0	211204..213954	-	916	154244168	-	Xaut_0210	-	ABC transporter related
211	 70.48	0	213966..214961	-	331	154244169	-	Xaut_0211	-	secretion protein HlyD family protein
212	 69.30	0	215116..215913	-	265	154244170	-	Xaut_0212	-	hypothetical protein
213	 66.67	0	215965..216426	-	153	154244171	-	Xaut_0213	-	AsnC family transcriptional regulator
214	 70.77	0	216589..219048	+	819	154244172	-	Xaut_0214	-	pyruvate dehydrogenase (acetyl-transferring)
215	 64.13	0	219645..221297	+	550	154244173	-	Xaut_0215	-	integrase family protein
216	 59.26	-2	221574..222410	-	278	154244174	-	Xaut_0216	-	hypothetical protein
217	 62.71	-1	222998..224008	+	336	154244175	-	Xaut_0217	-	hypothetical protein
218	 62.22	-1	224108..224332	+	74	154244176	-	Xaut_0218	-	putative addiction module antidote
219	 63.93	0	224329..224766	+	145	154244177	-	Xaut_0219	-	death-on-curing family protein
220	 64.04	0	225848..226114	+	88	154244178	-	Xaut_0220	-	transposase IS3/IS911 family protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.