IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.51   STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1612	 68.79	0	1839591..1841192	-	533	154245570	-	Xaut_1625	-	beta-lactamase
1613	 68.83	0	1842314..1844626	-	770	154245571	-	Xaut_1626	-	PAS/PAC sensor signal transduction histidine kinase
1614	 65.00	0	1844929..1845468	+	179	154245572	-	Xaut_1627	-	formaldehyde-activating protein
1615	 68.09	0	1845554..1846816	-	420	154245573	-	Xaut_1628	-	major facilitator transporter
1616	 70.13	0	1847236..1847928	+	230	154245574	-	Xaut_1629	-	ECF subfamily RNA polymerase sigma-24 factor
1617	 73.73	+1	1847925..1848632	+	235	154245575	-	Xaut_1630	-	anti-ECFsigma factor, ChrR
1618	 69.81	0	1848639..1849178	-	179	154245576	-	Xaut_1631	-	hypothetical protein
1619	 70.46	0	1849201..1850280	+	359	154245577	-	Xaut_1632	-	endonuclease III
1620	 71.54	+1	1850567..1852351	-	594	154245578	-	Xaut_1633	-	shikimate kinase., 3-dehydroquinate synthase
1621	 72.77	+1	1852788..1853852	+	354	154245579	-	Xaut_1634	-	integrase family protein
1622	 71.81	+1	1853857..1854420	-	187	154245580	-	Xaut_1635	-	nitroreductase
1623	 71.51	+1	1854651..1855724	+	357	154245581	-	Xaut_1636	-	hypothetical protein
1624	 72.32	+1	1855794..1856129	+	111	154245582	-	Xaut_1637	-	cytochrome c class I
1625	 65.81	0	1856211..1858193	-	660	154245583	-	Xaut_1638	-	threonyl-tRNA synthetase
1626	 69.35	0	1858640..1859272	+	210	154245584	-	Xaut_1639	-	ErfK/YbiS/YcfS/YnhG family protein
1627	 65.68	0	1859313..1860326	+	337	154245585	-	Xaut_1640	-	extracellular solute-binding protein
1628	 69.73	0	1860489..1861499	+	336	154245586	-	Xaut_1641	-	beta-lactamase domain-containing protein
1629	 69.55	0	1861969..1862835	+	288	154245587	-	Xaut_1643	-	NAD(+) kinase
1630	 66.38	0	1862925..1864343	+	472	154245588	-	Xaut_1644	-	membrane bound O-acyl transferase MBOAT family protein
1631	 68.54	0	1864422..1865540	+	372	154245589	-	Xaut_1645	-	hypothetical protein
1632	 68.70	0	1865593..1866231	-	212	154245590	-	Xaut_1646	-	hypothetical protein
1633	 71.84	+1	1866324..1867445	-	373	154245591	-	Xaut_1647	-	patatin
1634	 67.88	0	1867628..1868122	-	164	154245592	-	Xaut_1648	-	phosphoribosyl-AMP cyclohydrolase
1635	 66.26	0	1868240..1868968	-	242	154245593	-	Xaut_1649	-	GTP cyclohydrolase I
1636	 70.23	0	1869349..1869825	+	158	154245594	-	Xaut_1650	-	NifU-like protein
1637	 73.40	+1	1869830..1870438	-	202	154245595	-	Xaut_1651	-	metal dependent phosphohydrolase
1638	 70.70	0	1870576..1870947	+	123	154245596	-	Xaut_1652	-	hypothetical protein
1639	 68.36	0	1871168..1873474	-	768	154245597	-	Xaut_1653	-	1A family penicillin-binding protein
1640	 69.30	0	1873613..1874029	-	138	154245598	-	Xaut_1654	-	hypothetical protein
1641	 71.90	+1	1874217..1875440	+	407	154245599	-	Xaut_1655	-	tetratricopeptide TPR_4
1642	 70.42	0	1875437..1875916	+	159	154245600	-	Xaut_1656	-	CcmE/CycJ protein
1643	 70.49	0	1875920..1877905	+	661	154245601	-	Xaut_1657	-	cytochrome c-type biogenesis protein CcmF
1644	 70.14	0	1877902..1878390	+	162	154245602	-	Xaut_1658	-	cytochrome C biogenesis protein
1645	 70.77	0	1878404..1879354	-	316	154245603	-	Xaut_1659	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1646	 69.78	0	1879353..1880252	+	299	154245604	-	Xaut_1660	-	phosphoserine phosphatase SerB
1647	 67.87	0	1880330..1881826	-	498	154245605	-	Xaut_1661	-	protease Do
1648	 69.84	0	1882176..1882364	-	62	154245606	-	Xaut_1662	-	hypothetical protein
1649	 68.11	0	1882384..1883286	-	300	154245607	-	Xaut_1663	-	HflC protein
1650	 67.44	0	1883283..1884440	-	385	154245608	-	Xaut_1664	-	HflK protein
1651	 65.59	0	1884685..1884963	-	92	154245609	-	Xaut_1665	-	hypothetical protein
1652	 67.84	0	1884986..1885240	+	84	154245610	-	Xaut_1666	-	hypothetical protein
1653	 66.67	0	1885406..1886794	+	462	154245611	-	Xaut_1667	-	fumarate hydratase
1654	 64.41	0	1886968..1887588	+	206	154245612	-	Xaut_1668	-	hypothetical protein
1655	 63.96	0	1887812..1888438	+	208	154245613	-	Xaut_1669	-	LemA family protein
1656	 69.63	0	1888455..1889264	+	269	154245614	-	Xaut_1670	-	hypothetical protein
1657	 71.36	0	1889365..1890024	+	219	154245615	-	Xaut_1671	-	hypothetical protein
1658	 61.42	-1	1890296..1890676	+	126	154245616	-	Xaut_1672	-	hypothetical protein
1659	 66.97	0	1890951..1891934	+	327	154245617	-	Xaut_1673	-	malate dehydrogenase
1660	 65.05	0	1892558..1892929	+	123	154245618	-	Xaut_1674	-	30S ribosomal protein S12
1661	 64.12	0	1892955..1893425	+	156	154245619	-	Xaut_1675	-	30S ribosomal protein S7
1662	 63.68	0	1893444..1895519	+	691	154245620	-	Xaut_1676	-	elongation factor G
1663	 65.74	0	1895588..1896778	+	396	154245621	-	Xaut_1677	-	elongation factor Tu
1664	 61.49	-1	1896846..1897154	+	102	154245622	-	Xaut_1678	-	ribosomal protein S10
1665	 65.84	0	1897177..1897902	+	241	154245623	-	Xaut_1679	-	50S ribosomal protein L3
1666	 65.86	0	1897902..1898522	+	206	154245624	-	Xaut_1680	-	ribosomal protein L4/L1e
1667	 59.87	-1	1898519..1898827	+	102	154245625	-	Xaut_1681	-	50S ribosomal protein L23
1668	 66.43	0	1898853..1899686	+	277	154245626	-	Xaut_1682	-	50S ribosomal protein L2
1669	 61.29	-1	1899698..1899976	+	92	154245627	-	Xaut_1683	-	ribosomal protein S19
1670	 66.93	0	1899983..1900363	+	126	154245628	-	Xaut_1684	-	ribosomal protein L22
1671	 66.40	0	1900363..1901121	+	252	154245629	-	Xaut_1685	-	ribosomal protein S3
1672	 67.87	0	1901152..1901565	+	137	154245630	-	Xaut_1686	-	50S ribosomal protein L16
1673	 62.91	-1	1901576..1901788	+	70	154245631	-	Xaut_1687	-	ribosomal protein L29
1674	 62.65	-1	1901796..1902044	+	82	154245632	-	Xaut_1688	-	ribosomal protein S17
1675	 57.70	-2	1902232..1902666	+	144	154245633	-	Xaut_1689	-	ribosomal protein L14
1676	 67.78	0	1903156..1903425	-	89	154245634	-	Xaut_1690	-	ribosomal protein S20
1677	 70.92	0	1903740..1904726	+	328	154245635	-	Xaut_1691	-	NADH dehydrogenase (ubiquinone)
1678	 72.08	+1	1904784..1905596	+	270	154245636	-	Xaut_1692	-	phosphoribosylanthranilate isomerase
1679	 67.73	0	1905593..1906810	+	405	154245637	-	Xaut_1693	-	tryptophan synthase subunit beta
1680	 67.23	0	1906813..1907169	+	118	154245638	-	Xaut_1694	-	hypothetical protein
1681	 70.57	0	1907274..1908119	+	281	154245639	-	Xaut_1695	-	tryptophan synthase, alpha subunit
1682	 67.23	0	1908282..1909175	+	297	154245640	-	Xaut_1696	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
1683	 72.32	+1	1909226..1910569	+	447	154245641	-	Xaut_1697	-	FolC bifunctional protein
1684	 70.44	0	1910580..1912433	-	617	154245642	-	Xaut_1698	-	phosphogluconate dehydratase
1685	 70.30	0	1913082..1914623	+	513	154245643	-	Xaut_1699	-	GntR domain-containing protein
1686	 66.29	0	1914650..1915456	-	268	154245644	-	Xaut_1700	-	enoyl-CoA hydratase/isomerase
1687	 71.92	+1	1915499..1916563	-	354	154245645	-	Xaut_1701	-	acyl-CoA dehydrogenase domain-containing protein
1688	 67.84	0	1916570..1917760	-	396	154245646	-	Xaut_1702	-	acyl-CoA dehydrogenase domain-containing protein
1689	 71.90	+1	1917770..1918762	-	330	154245647	-	Xaut_1703	-	alcohol dehydrogenase
1690	 70.93	0	1918970..1920565	+	531	154245648	-	Xaut_1704	-	AMP-dependent synthetase and ligase
1691	 68.94	0	1920602..1921567	-	321	154245649	-	Xaut_1705	-	alpha/beta hydrolase fold
1692	 66.97	0	1922011..1923315	+	434	154245650	-	Xaut_1706	-	extracellular ligand-binding receptor
1693	 66.78	0	1923403..1924287	+	294	154245651	-	Xaut_1707	-	inner-membrane translocator
1694	 65.33	0	1924284..1925330	+	348	154245652	-	Xaut_1708	-	inner-membrane translocator
1695	 68.29	0	1925327..1926064	+	245	154245653	-	Xaut_1709	-	ABC transporter related
1696	 67.92	0	1926045..1926761	+	238	154245654	-	Xaut_1710	-	ABC transporter related
1697	 68.92	0	1926775..1927530	+	251	154245655	-	Xaut_1711	-	short-chain dehydrogenase/reductase SDR
1698	 66.31	0	1927552..1928388	+	278	154245656	-	Xaut_1712	-	transketolase domain-containing protein
1699	 68.07	0	1928381..1929379	+	332	154245657	-	Xaut_1713	-	transketolase central region
1700	 70.89	0	1929384..1930472	+	362	154245658	-	Xaut_1714	-	iron-containing alcohol dehydrogenase
1701	 67.89	0	1930483..1930974	-	163	154245659	-	Xaut_1715	-	hypothetical protein
1702	 67.94	0	1932252..1933034	-	260	154245660	-	Xaut_1716	-	hypothetical protein
1703	 70.53	0	1933205..1933774	+	189	154245661	-	Xaut_1717	-	ECF subfamily RNA polymerase sigma-24 factor
1704	 74.62	+1	1933771..1934499	+	242	154245662	-	Xaut_1718	-	hypothetical protein
1705	 66.08	0	1934646..1935326	-	226	154245663	-	Xaut_1719	-	hypothetical protein
1706	 49.82	-2	1935551..1935823	-	90	154245664	-	Xaut_1720	-	hypothetical protein
1707	 67.68	0	1936217..1937695	-	492	154245665	-	Xaut_1721	-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
1708	 71.98	+1	1937701..1938528	-	275	154245666	-	Xaut_1722	-	HAD family hydrolase
1709	 63.55	0	1938592..1939137	+	181	154245667	-	Xaut_1723	-	hypothetical protein
1710	 76.67	+2	1939187..1939456	+	89	154245668	-	Xaut_1724	-	hypothetical protein
1711	 62.64	-1	1939669..1939842	-	57	154245669	-	Xaut_1725	-	hypothetical protein
67.51	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.