IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.51   STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1553	 67.88	0	1776248..1776988	+	246	154245511	-	Xaut_1565	-	ABC transporter related
1554	 69.36	0	1776981..1777685	+	234	154245512	-	Xaut_1566	-	ABC transporter related
1555	 65.48	0	1777715..1778641	+	308	154245513	-	Xaut_1567	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1556	 63.77	0	1778733..1779527	+	264	154245514	-	Xaut_1568	-	transcriptional regulator, TrmB
1557	 65.95	0	1779534..1780226	-	230	154245515	-	Xaut_1569	-	GntR family transcriptional regulator
1558	 63.14	-1	1780553..1781119	+	188	154245516	-	Xaut_1570	-	glyoxalase/bleomycin resistance protein/dioxygenase
1559	 69.14	0	1781206..1783392	+	728	154245517	-	Xaut_1571	-	dehydrogenase E1 component
1560	 72.22	+1	1783406..1784791	+	461	154245518	-	Xaut_1572	-	biotin/lipoyl attachment domain-containing protein
1561	 65.06	0	1784857..1786104	+	415	154245519	-	Xaut_1573	-	branched-chain amino acid ABC transporter
1562	 66.67	0	1786219..1787160	+	313	154245520	-	Xaut_1574	-	inner-membrane translocator
1563	 67.07	0	1787164..1788390	+	408	154245521	-	Xaut_1575	-	inner-membrane translocator
1564	 66.67	0	1788387..1789139	+	250	154245522	-	Xaut_1576	-	ABC transporter related
1565	 67.92	0	1789139..1789855	+	238	154245523	-	Xaut_1577	-	ABC transporter related
1566	 64.93	0	1790025..1791233	-	402	154245524	-	Xaut_1578	-	ABC transporter substrate-binding protein
1567	 63.95	0	1791345..1791602	-	85	154245525	-	Xaut_1579	-	hypothetical protein
1568	 66.67	0	1791738..1791980	-	80	154245526	-	Xaut_1580	-	hypothetical protein
1569	 70.57	0	1792086..1793777	-	563	154245527	-	Xaut_1581	-	NADH/ubiquinone/plastoquinone (complex I)
1570	 71.45	0	1793774..1795279	-	501	154245528	-	Xaut_1582	-	NADH dehydrogenase (quinone)
1571	 70.72	0	1795276..1795596	-	106	154245529	-	Xaut_1583	-	NADH-ubiquinone oxidoreductase chain 4L
1572	 72.35	+1	1795593..1796525	-	310	154245530	-	Xaut_1584	-	hypothetical protein
1573	 68.81	0	1796522..1796848	-	108	154245531	-	Xaut_1585	-	putative monovalent cation/H+ antiporter subunit G
1574	 72.45	+1	1796845..1797138	-	97	154245532	-	Xaut_1586	-	hypothetical protein
1575	 71.75	+1	1797131..1797622	-	163	154245533	-	Xaut_1587	-	hypothetical protein
1576	 67.45	0	1797774..1798670	+	298	154245534	-	Xaut_1588	-	transglutaminase domain-containing protein
1577	 71.97	+1	1798934..1800763	+	609	154245535	-	Xaut_1589	-	DEAD/DEAH box helicase domain-containing protein
1578	 70.91	0	1800924..1802171	+	415	154245536	-	Xaut_1590	-	molecular chaperone, HSP70 class
1579	 72.51	+1	1802172..1803113	-	313	154245537	-	Xaut_1591	-	LysR family transcriptional regulator
1580	 72.57	+1	1803255..1803965	+	236	154245538	-	Xaut_1592	-	short chain dehydrogenase
1581	 73.42	+1	1804000..1804488	-	162	154245539	-	Xaut_1593	-	hypothetical protein
1582	 71.49	+1	1804515..1804991	-	158	154245540	-	Xaut_1594	-	hypothetical protein
1583	 73.99	+1	1804995..1805540	-	181	154245541	-	Xaut_1595	-	ECF subfamily RNA polymerase sigma-24 factor
1584	 69.42	0	1805829..1807025	+	398	154245542	-	Xaut_1596	-	RND family efflux transporter MFP subunit
1585	 66.41	0	1807022..1810156	+	1044	154245543	-	Xaut_1597	-	acriflavin resistance protein
1586	 66.67	0	1810312..1811112	-	266	154245544	-	Xaut_1598	-	extracellular solute-binding protein
1587	 66.94	0	1811148..1811888	-	246	154245545	-	Xaut_1599	-	ABC transporter related
1588	 64.96	0	1811982..1812626	-	214	154245546	-	Xaut_1600	-	polar amino acid ABC transporter, inner membrane subunit
1589	 65.06	0	1812634..1813317	-	227	154245547	-	Xaut_1601	-	polar amino acid ABC transporter, inner membrane subunit
1590	 67.83	0	1813536..1815077	+	513	154245548	-	Xaut_1602	-	galactarate dehydratase
1591	 68.24	0	1815053..1816069	+	338	154245549	-	Xaut_1603	-	GntR family transcriptional regulator
1592	 63.56	0	1816242..1816691	-	149	154245550	-	Xaut_1604	-	hypothetical protein
1593	 69.70	0	1816688..1820176	-	1162	154245551	-	Xaut_1605	-	hypothetical protein
1594	 66.21	0	1820387..1820824	-	145	154245552	-	Xaut_1606	-	electron transfer flavoprotein alpha subunit
1595	 66.21	0	1821904..1822776	-	290	154245553	-	Xaut_1608	-	integrase catalytic region
1596	 64.04	0	1822827..1823093	-	88	154245554	-	Xaut_1609	-	transposase IS3/IS911 family protein
1597	 59.86	-1	1823155..1823448	-	97	154245555	-	Xaut_1610	-	transposase IS3/IS911 family protein
1598	 48.35	-2	1823727..1824905	-	392	154245556	-	Xaut_1611	-	hypothetical protein
1599	 68.74	0	1825082..1825660	-	192	154245557	-	Xaut_1612	-	hypothetical protein
1600	 67.73	0	1825758..1827359	-	533	154245558	-	Xaut_1613	-	glucose-methanol-choline oxidoreductase
1601	 70.34	0	1827398..1828786	-	462	154245559	-	Xaut_1614	-	FAD linked oxidase domain-containing protein
1602	 72.16	+1	1828951..1829715	-	254	154245560	-	Xaut_1615	-	short-chain dehydrogenase/reductase SDR
1603	 69.90	0	1829712..1830545	-	277	154245561	-	Xaut_1616	-	shikimate dehydrogenase substrate binding subunit
1604	 67.38	0	1830575..1831279	-	234	154245562	-	Xaut_1617	-	ABC transporter related
1605	 67.80	0	1831263..1833113	-	616	154245563	-	Xaut_1618	-	ABC transporter related
1606	 64.26	0	1833118..1833990	-	290	154245564	-	Xaut_1619	-	inner-membrane translocator
1607	 66.75	0	1834257..1835483	-	408	154245565	-	Xaut_1620	-	extracellular ligand-binding receptor
1608	 68.64	0	1835780..1836790	+	336	154245566	-	Xaut_1621	-	quinone oxidoreductase putative PIG3
1609	 70.82	0	1836787..1837557	+	256	154245567	-	Xaut_1622	-	3-ketoacyl-(acyl-carrier-protein) reductase
1610	 69.77	0	1837575..1838315	+	246	154245568	-	Xaut_1623	-	short-chain dehydrogenase/reductase SDR
1611	 72.38	+1	1838364..1839080	+	238	154245569	-	Xaut_1624	-	GntR domain-containing protein
1612	 68.79	0	1839591..1841192	-	533	154245570	-	Xaut_1625	-	beta-lactamase
1613	 68.83	0	1842314..1844626	-	770	154245571	-	Xaut_1626	-	PAS/PAC sensor signal transduction histidine kinase
1614	 65.00	0	1844929..1845468	+	179	154245572	-	Xaut_1627	-	formaldehyde-activating protein
1615	 68.09	0	1845554..1846816	-	420	154245573	-	Xaut_1628	-	major facilitator transporter
1616	 70.13	0	1847236..1847928	+	230	154245574	-	Xaut_1629	-	ECF subfamily RNA polymerase sigma-24 factor
1617	 73.73	+1	1847925..1848632	+	235	154245575	-	Xaut_1630	-	anti-ECFsigma factor, ChrR
1618	 69.81	0	1848639..1849178	-	179	154245576	-	Xaut_1631	-	hypothetical protein
1619	 70.46	0	1849201..1850280	+	359	154245577	-	Xaut_1632	-	endonuclease III
1620	 71.54	+1	1850567..1852351	-	594	154245578	-	Xaut_1633	-	shikimate kinase., 3-dehydroquinate synthase
1621	 72.77	+1	1852788..1853852	+	354	154245579	-	Xaut_1634	-	integrase family protein
1622	 71.81	+1	1853857..1854420	-	187	154245580	-	Xaut_1635	-	nitroreductase
1623	 71.51	+1	1854651..1855724	+	357	154245581	-	Xaut_1636	-	hypothetical protein
1624	 72.32	+1	1855794..1856129	+	111	154245582	-	Xaut_1637	-	cytochrome c class I
1625	 65.81	0	1856211..1858193	-	660	154245583	-	Xaut_1638	-	threonyl-tRNA synthetase
1626	 69.35	0	1858640..1859272	+	210	154245584	-	Xaut_1639	-	ErfK/YbiS/YcfS/YnhG family protein
1627	 65.68	0	1859313..1860326	+	337	154245585	-	Xaut_1640	-	extracellular solute-binding protein
1628	 69.73	0	1860489..1861499	+	336	154245586	-	Xaut_1641	-	beta-lactamase domain-containing protein
1629	 69.55	0	1861969..1862835	+	288	154245587	-	Xaut_1643	-	NAD(+) kinase
1630	 66.38	0	1862925..1864343	+	472	154245588	-	Xaut_1644	-	membrane bound O-acyl transferase MBOAT family protein
1631	 68.54	0	1864422..1865540	+	372	154245589	-	Xaut_1645	-	hypothetical protein
1632	 68.70	0	1865593..1866231	-	212	154245590	-	Xaut_1646	-	hypothetical protein
1633	 71.84	+1	1866324..1867445	-	373	154245591	-	Xaut_1647	-	patatin
1634	 67.88	0	1867628..1868122	-	164	154245592	-	Xaut_1648	-	phosphoribosyl-AMP cyclohydrolase
1635	 66.26	0	1868240..1868968	-	242	154245593	-	Xaut_1649	-	GTP cyclohydrolase I
1636	 70.23	0	1869349..1869825	+	158	154245594	-	Xaut_1650	-	NifU-like protein
1637	 73.40	+1	1869830..1870438	-	202	154245595	-	Xaut_1651	-	metal dependent phosphohydrolase
1638	 70.70	0	1870576..1870947	+	123	154245596	-	Xaut_1652	-	hypothetical protein
1639	 68.36	0	1871168..1873474	-	768	154245597	-	Xaut_1653	-	1A family penicillin-binding protein
1640	 69.30	0	1873613..1874029	-	138	154245598	-	Xaut_1654	-	hypothetical protein
1641	 71.90	+1	1874217..1875440	+	407	154245599	-	Xaut_1655	-	tetratricopeptide TPR_4
1642	 70.42	0	1875437..1875916	+	159	154245600	-	Xaut_1656	-	CcmE/CycJ protein
1643	 70.49	0	1875920..1877905	+	661	154245601	-	Xaut_1657	-	cytochrome c-type biogenesis protein CcmF
1644	 70.14	0	1877902..1878390	+	162	154245602	-	Xaut_1658	-	cytochrome C biogenesis protein
1645	 70.77	0	1878404..1879354	-	316	154245603	-	Xaut_1659	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1646	 69.78	0	1879353..1880252	+	299	154245604	-	Xaut_1660	-	phosphoserine phosphatase SerB
1647	 67.87	0	1880330..1881826	-	498	154245605	-	Xaut_1661	-	protease Do
1648	 69.84	0	1882176..1882364	-	62	154245606	-	Xaut_1662	-	hypothetical protein
1649	 68.11	0	1882384..1883286	-	300	154245607	-	Xaut_1663	-	HflC protein
1650	 67.44	0	1883283..1884440	-	385	154245608	-	Xaut_1664	-	HflK protein
1651	 65.59	0	1884685..1884963	-	92	154245609	-	Xaut_1665	-	hypothetical protein
1652	 67.84	0	1884986..1885240	+	84	154245610	-	Xaut_1666	-	hypothetical protein
67.51	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.