IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1483	 70.30	0	1702777..1703547	-	256	154245441	-	Xaut_1494	-	phospholipase/carboxylesterase
1484	 74.59	+1	1703781..1704815	-	344	154245442	-	Xaut_1495	-	urea amidolyase related protein
1485	 71.01	0	1704812..1705570	-	252	154245443	-	Xaut_1496	-	allophanate hydrolase subunit 1
1486	 71.03	0	1705554..1706309	-	251	154245444	-	Xaut_1497	-	hypothetical protein
1487	 67.94	0	1706472..1707179	-	235	154245445	-	Xaut_1498	-	ABC transporter related
1488	 68.57	0	1707169..1707903	-	244	154245446	-	Xaut_1499	-	ABC transporter related
1489	 66.86	0	1707900..1708910	-	336	154245447	-	Xaut_1500	-	inner-membrane translocator
1490	 65.41	0	1708913..1709788	-	291	154245448	-	Xaut_1501	-	inner-membrane translocator
1491	 66.11	0	1709824..1711080	-	418	154245449	-	Xaut_1502	-	extracellular ligand-binding receptor
1492	 68.47	0	1711177..1712007	-	276	154245450	-	Xaut_1503	-	hypothetical protein
1493	 70.30	0	1712191..1712658	-	155	154245451	-	Xaut_1504	-	endoribonuclease L-PSP
1494	 70.60	0	1712669..1713736	-	355	154245452	-	Xaut_1505	-	hypothetical protein
1495	 69.79	0	1713773..1714795	-	340	154245453	-	Xaut_1506	-	pyridoxal-5'-phosphate-dependent protein beta subunit
1496	 65.79	0	1714876..1715790	-	304	154245454	-	Xaut_1507	-	LysR family transcriptional regulator
1497	 69.34	0	1716096..1716731	-	211	154245455	-	Xaut_1508	-	glutathione S-transferase domain-containing protein
1498	 69.07	0	1716783..1718198	-	471	154245456	-	Xaut_1509	-	HlyD family type I secretion membrane fusion protein
1499	 72.05	+1	1718185..1720116	-	643	154245457	-	Xaut_1510	-	type I secretion system ATPase
1500	 65.49	0	1720542..1721219	-	225	154245458	-	Xaut_1511	-	TetR family transcriptional regulator
1501	 70.77	0	1721367..1722584	+	405	154245459	-	Xaut_1512	-	secretion protein HlyD family protein
1502	 66.04	0	1722617..1724215	+	532	154245460	-	Xaut_1513	-	EmrB/QacA family drug resistance transporter
1503	 69.91	0	1724225..1725490	-	421	154245461	-	Xaut_1514	-	flavocytochrome c sulphide dehydrogenase flavin-binding
1504	 65.68	0	1725496..1726002	-	168	154245462	-	Xaut_1515	-	hypothetical protein
1505	 71.43	0	1726049..1726468	-	139	154245463	-	Xaut_1516	-	cytochrome c553-like protein
1506	 67.69	0	1726497..1727279	-	260	154245464	-	Xaut_1517	-	putative cytochrome
1507	 67.42	0	1727263..1728585	-	440	154245465	-	Xaut_1518	-	oxidoreductase molybdopterin binding
1508	 66.31	0	1728687..1730378	-	563	154245466	-	Xaut_1519	-	5'-nucleotidase domain-containing protein
1509	 63.33	-1	1730489..1730818	-	109	154245467	-	Xaut_1520	-	sulphur oxidation protein SoxZ
1510	 64.77	0	1730889..1731362	-	157	154245468	-	Xaut_1521	-	sulfur oxidation protein SoxY
1511	 64.98	0	1731613..1732443	+	276	154245469	-	Xaut_1522	-	hypothetical protein
1512	 66.18	0	1732458..1733072	+	204	154245470	-	Xaut_1523	-	hypothetical protein
1513	 68.03	0	1733115..1733699	-	194	154245471	-	Xaut_1524	-	hypothetical protein
1514	 69.83	0	1733723..1734448	-	241	154245472	-	Xaut_1525	-	cytochrome c biogenesis protein transmembrane region
1515	 68.53	0	1734557..1734931	+	124	154245473	-	Xaut_1526	-	hypothetical protein
1516	 62.93	-1	1734971..1735345	+	124	154245474	-	Xaut_1527	-	regulatory protein ArsR
1517	 71.45	0	1735418..1736524	+	368	154245475	-	Xaut_1528	-	protein of unknown function DUF395 YeeE/YedE
1518	 65.33	0	1736799..1737845	+	348	154245476	-	Xaut_1529	-	putative substrate-binding component of ABC transporter
1519	 66.78	0	1737976..1738833	+	285	154245477	-	Xaut_1530	-	ABC transporter related
1520	 65.65	0	1738852..1739739	+	295	154245478	-	Xaut_1531	-	binding-protein-dependent transport systems inner membrane component
1521	 71.91	+1	1739795..1741204	-	469	154245479	-	Xaut_1532	-	integral membrane sensor signal transduction histidine kinase
1522	 65.77	0	1741194..1741865	-	223	154245480	-	Xaut_1533	-	two component transcriptional regulator
1523	 71.92	+1	1742036..1743025	-	329	154245481	-	Xaut_1534	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
1524	 70.95	0	1743022..1745100	-	692	154245482	-	Xaut_1535	-	transketolase
1525	 68.02	0	1745155..1747071	-	638	154245483	-	Xaut_1536	-	TRAP C4-dicarboxylate transport system permease DctM subunit
1526	 66.47	0	1747076..1748113	-	345	154245484	-	Xaut_1537	-	TRAP dicarboxylate transporter, DctP subunit
1527	 72.58	+1	1748219..1749097	-	292	154245485	-	Xaut_1538	-	3-hydroxyisobutyrate dehydrogenase
1528	 69.82	0	1749268..1750314	-	348	154245486	-	Xaut_1539	-	transketolase central region
1529	 66.55	0	1750311..1751159	-	282	154245487	-	Xaut_1540	-	transketolase domain-containing protein
1530	 67.02	0	1751201..1752049	-	282	154245488	-	Xaut_1541	-	short-chain dehydrogenase/reductase SDR
1531	 68.46	0	1752061..1752951	+	296	154245489	-	Xaut_1542	-	LysR family transcriptional regulator
1532	 58.52	-2	1753241..1753633	-	130	154245490	-	Xaut_1543	-	hypothetical protein
1533	 63.57	0	1753649..1754521	-	290	154245491	-	Xaut_1544	-	hypothetical protein
1534	 66.48	0	1754548..1756746	-	732	154245492	-	Xaut_1545	-	amine oxidase
1535	 66.07	0	1757495..1757830	-	111	154245493	-	Xaut_1546	-	ribosomal protein S21
1536	 66.59	0	1757887..1759266	-	459	154245494	-	Xaut_1547	-	hypothetical protein
1537	 64.30	0	1759407..1760210	-	267	154245495	-	Xaut_1548	-	N-formylglutamate amidohydrolase
1538	 64.19	0	1760341..1761147	+	268	154245496	-	Xaut_1549	-	transglutaminase domain-containing protein
1539	 68.24	0	1761186..1763027	-	613	154245497	-	Xaut_1550	-	cyclic nucleotide-binding protein
1540	 71.51	+1	1763327..1764916	+	529	154245498	-	Xaut_1551	-	integral membrane sensor signal transduction histidine kinase
1541	 68.67	0	1764913..1765512	+	199	154245499	-	Xaut_1552	-	response regulator receiver protein
1542	 70.99	0	1765696..1766181	+	161	154245500	-	Xaut_1553	-	hypothetical protein
1543	 62.20	-1	1766364..1766699	+	111	154245501	-	Xaut_1554	-	hypothetical protein
1544	 65.98	0	1766726..1767598	-	290	154245502	-	Xaut_1555	-	transglutaminase domain-containing protein
1545	 59.15	-2	1767984..1768196	+	70	154245503	-	Xaut_1556	-	cold-shock DNA-binding domain-containing protein
1546	 64.55	0	1768573..1768761	+	62	154245504	-	Xaut_1557	-	hypothetical protein
1547	 64.56	0	1769816..1770052	+	78	154245505	-	Xaut_1559	-	hypothetical protein
1548	 65.61	0	1770325..1771368	-	347	154245506	-	Xaut_1560	-	phenylacetaldoxime dehydratase
1549	 65.67	0	1771440..1772648	-	402	154245507	-	Xaut_1561	-	extracellular ligand-binding receptor
1550	 66.75	0	1773092..1774312	+	406	154245508	-	Xaut_1562	-	extracellular ligand-binding receptor
1551	 65.96	0	1774371..1775222	+	283	154245509	-	Xaut_1563	-	inner-membrane translocator
1552	 68.04	0	1775226..1776245	+	339	154245510	-	Xaut_1564	-	inner-membrane translocator
1553	 67.88	0	1776248..1776988	+	246	154245511	-	Xaut_1565	-	ABC transporter related
1554	 69.36	0	1776981..1777685	+	234	154245512	-	Xaut_1566	-	ABC transporter related
1555	 65.48	0	1777715..1778641	+	308	154245513	-	Xaut_1567	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1556	 63.77	0	1778733..1779527	+	264	154245514	-	Xaut_1568	-	transcriptional regulator, TrmB
1557	 65.95	0	1779534..1780226	-	230	154245515	-	Xaut_1569	-	GntR family transcriptional regulator
1558	 63.14	-1	1780553..1781119	+	188	154245516	-	Xaut_1570	-	glyoxalase/bleomycin resistance protein/dioxygenase
1559	 69.14	0	1781206..1783392	+	728	154245517	-	Xaut_1571	-	dehydrogenase E1 component
1560	 72.22	+1	1783406..1784791	+	461	154245518	-	Xaut_1572	-	biotin/lipoyl attachment domain-containing protein
1561	 65.06	0	1784857..1786104	+	415	154245519	-	Xaut_1573	-	branched-chain amino acid ABC transporter
1562	 66.67	0	1786219..1787160	+	313	154245520	-	Xaut_1574	-	inner-membrane translocator
1563	 67.07	0	1787164..1788390	+	408	154245521	-	Xaut_1575	-	inner-membrane translocator
1564	 66.67	0	1788387..1789139	+	250	154245522	-	Xaut_1576	-	ABC transporter related
1565	 67.92	0	1789139..1789855	+	238	154245523	-	Xaut_1577	-	ABC transporter related
1566	 64.93	0	1790025..1791233	-	402	154245524	-	Xaut_1578	-	ABC transporter substrate-binding protein
1567	 63.95	0	1791345..1791602	-	85	154245525	-	Xaut_1579	-	hypothetical protein
1568	 66.67	0	1791738..1791980	-	80	154245526	-	Xaut_1580	-	hypothetical protein
1569	 70.57	0	1792086..1793777	-	563	154245527	-	Xaut_1581	-	NADH/ubiquinone/plastoquinone (complex I)
1570	 71.45	0	1793774..1795279	-	501	154245528	-	Xaut_1582	-	NADH dehydrogenase (quinone)
1571	 70.72	0	1795276..1795596	-	106	154245529	-	Xaut_1583	-	NADH-ubiquinone oxidoreductase chain 4L
1572	 72.35	+1	1795593..1796525	-	310	154245530	-	Xaut_1584	-	hypothetical protein
1573	 68.81	0	1796522..1796848	-	108	154245531	-	Xaut_1585	-	putative monovalent cation/H+ antiporter subunit G
1574	 72.45	+1	1796845..1797138	-	97	154245532	-	Xaut_1586	-	hypothetical protein
1575	 71.75	+1	1797131..1797622	-	163	154245533	-	Xaut_1587	-	hypothetical protein
1576	 67.45	0	1797774..1798670	+	298	154245534	-	Xaut_1588	-	transglutaminase domain-containing protein
1577	 71.97	+1	1798934..1800763	+	609	154245535	-	Xaut_1589	-	DEAD/DEAH box helicase domain-containing protein
1578	 70.91	0	1800924..1802171	+	415	154245536	-	Xaut_1590	-	molecular chaperone, HSP70 class
1579	 72.51	+1	1802172..1803113	-	313	154245537	-	Xaut_1591	-	LysR family transcriptional regulator
1580	 72.57	+1	1803255..1803965	+	236	154245538	-	Xaut_1592	-	short chain dehydrogenase
1581	 73.42	+1	1804000..1804488	-	162	154245539	-	Xaut_1593	-	hypothetical protein
1582	 71.49	+1	1804515..1804991	-	158	154245540	-	Xaut_1594	-	hypothetical protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.