IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.51   STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1357	 70.76	0	1571115..1571627	+	170	154245315	-	Xaut_1368	-	hypothetical protein
1358	 68.98	0	1571844..1573097	+	417	154245316	-	Xaut_1369	-	major facilitator transporter
1359	 66.88	0	1573326..1573799	+	157	154245317	-	Xaut_1370	-	hypothetical protein
1360	 70.01	0	1573810..1574736	-	308	154245318	-	Xaut_1371	-	LysR family transcriptional regulator
1361	 67.76	0	1574872..1575330	+	152	154245319	-	Xaut_1372	-	DoxX family protein
1362	 68.35	0	1575483..1576490	-	335	154245320	-	Xaut_1373	-	polyprenyl synthetase
1363	 63.60	0	1576617..1576844	+	75	154245321	-	Xaut_1374	-	hypothetical protein
1364	 73.28	+1	1576834..1577604	+	256	154245322	-	Xaut_1375	-	methyltransferase small
1365	 69.93	0	1577717..1578604	+	295	154245323	-	Xaut_1376	-	peptidase S49
1366	 68.19	0	1578727..1580436	+	569	154245324	-	Xaut_1377	-	NAD synthetase
1367	 61.40	-1	1580411..1580695	-	94	154245325	-	Xaut_1378	-	hypothetical protein
1368	 72.96	+1	1580864..1583626	+	920	154245326	-	Xaut_1379	-	hypothetical protein
1369	 70.72	0	1583629..1583949	-	106	154245327	-	Xaut_1380	-	hypothetical protein
1370	 73.81	+1	1583993..1584874	-	293	154245328	-	Xaut_1381	-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
1371	 66.49	0	1585122..1586861	+	579	154245329	-	Xaut_1382	-	TPR repeat-containing protein
1372	 69.38	0	1586961..1588658	+	565	154245330	-	Xaut_1383	-	formate--tetrahydrofolate ligase
1373	 66.58	0	1588725..1589912	+	395	154245331	-	Xaut_1384	-	acetyl-CoA acetyltransferase
1374	 70.37	0	1590006..1590734	-	242	154245332	-	Xaut_1385	-	hypothetical protein
1375	 67.20	0	1590847..1591221	-	124	154245333	-	Xaut_1386	-	hypothetical protein
1376	 66.76	0	1591439..1592494	+	351	154245334	-	Xaut_1387	-	molybdenum cofactor biosynthesis protein A
1377	 70.61	0	1592847..1593860	+	337	154245335	-	Xaut_1388	-	hypothetical protein
1378	 71.96	+1	1593908..1594096	-	62	154245336	-	Xaut_1389	-	hypothetical protein
1379	 59.21	-2	1594205..1595197	-	330	154245337	-	Xaut_1390	-	patatin
1380	 70.18	0	1595303..1596355	-	350	154245338	-	Xaut_1391	-	sulfate ABC transporter, ATPase subunit
1381	 66.45	0	1596352..1597275	-	307	154245339	-	Xaut_1392	-	sulfate ABC transporter, inner membrane subunit CysW
1382	 67.84	0	1597272..1598126	-	284	154245340	-	Xaut_1393	-	sulfate ABC transporter, inner membrane subunit CysT
1383	 66.37	0	1598224..1599240	-	338	154245341	-	Xaut_1394	-	sulfate ABC transporter, periplasmic sulfate-binding protein
1384	 69.28	0	1599356..1600120	-	254	154245342	-	Xaut_1395	-	phosphoadenosine phosphosulfate reductase
1385	 69.84	0	1600125..1600628	-	167	154245343	-	Xaut_1396	-	hypothetical protein
1386	 66.43	0	1600615..1602270	-	551	154245344	-	Xaut_1397	-	nitrite/sulfite reductase hemoprotein beta subunit
1387	 72.06	+1	1602311..1602625	-	104	154245345	-	Xaut_1398	-	hypothetical protein
1388	 65.91	0	1602947..1603741	+	264	154245346	-	Xaut_1399	-	sulfate adenylyltransferase subunit 2
1389	 71.00	0	1603784..1605721	+	645	154245347	-	Xaut_1400	-	sulfate adenylyltransferase, large subunit
1390	 69.99	0	1605836..1606648	+	270	154245348	-	Xaut_1401	-	enoyl-CoA hydratase/isomerase
1391	 71.44	0	1607085..1608110	+	341	154245349	-	Xaut_1402	-	GntR family transcriptional regulator
1392	 66.85	0	1608722..1609261	+	179	154245350	-	Xaut_1403	-	hypothetical protein
1393	 65.25	0	1609369..1609791	-	140	154245351	-	Xaut_1404	-	Fe-S metabolism associated SufE
1394	 74.56	+1	1609927..1610382	-	151	154245352	-	Xaut_1405	-	hypothetical protein
1395	 72.58	+1	1610643..1612097	+	484	154245353	-	Xaut_1406	-	integral membrane sensor signal transduction histidine kinase
1396	 74.58	+1	1612094..1612813	+	239	154245354	-	Xaut_1407	-	peptidoglycan binding domain-containing protein
1397	 69.86	0	1612814..1613158	+	114	154245355	-	Xaut_1408	-	hypothetical protein
1398	 67.23	0	1613490..1614023	-	177	154245356	-	Xaut_1409	-	hypothetical protein
1399	 71.53	+1	1614167..1614742	-	191	154245357	-	Xaut_1410	-	hypothetical protein
1400	 68.46	0	1614812..1615258	-	148	154245358	-	Xaut_1411	-	thioesterase superfamily protein
1401	 69.74	0	1615255..1616523	-	422	154245359	-	Xaut_1412	-	phosphoribosylamine--glycine ligase
1402	 72.70	+1	1616675..1618165	+	496	154245360	-	Xaut_1413	-	exodeoxyribonuclease VII, large subunit
1403	 67.56	0	1618236..1618460	+	74	154245361	-	Xaut_1414	-	hypothetical protein
1404	 70.10	0	1618568..1619908	-	446	154245362	-	Xaut_1415	-	dihydroorotase
1405	 66.44	0	1619987..1620865	+	292	154245363	-	Xaut_1416	-	glycine cleavage T protein (aminomethyl transferase)
1406	 68.01	0	1620874..1621545	+	223	154245364	-	Xaut_1417	-	DNA-3-methyladenine glycosylase I
1407	 67.67	0	1622098..1622694	+	198	154245365	-	Xaut_1418	-	hypothetical protein
1408	 72.06	+1	1622716..1623975	+	419	154245366	-	Xaut_1419	-	amine oxidase
1409	 70.20	0	1623989..1624525	+	178	154245367	-	Xaut_1420	-	dihydrofolate reductase
1410	 75.28	+1	1624623..1628618	-	1331	154245368	-	Xaut_1421	-	AsmA family protein
1411	 65.25	0	1628682..1630094	-	470	154245369	-	Xaut_1422	-	D-lactate dehydrogenase (cytochrome)
1412	 64.31	0	1630309..1630818	+	169	154245370	-	Xaut_1423	-	hypothetical protein
1413	 70.77	0	1631364..1632290	-	308	154245371	-	Xaut_1424	-	ribosomal L11 methyltransferase
1414	 67.84	0	1632287..1633561	-	424	154245372	-	Xaut_1425	-	diguanylate cyclase
1415	 68.70	0	1633743..1636196	-	817	154245373	-	Xaut_1426	-	UvrD/REP helicase
1416	 64.96	0	1636313..1636546	-	77	154245374	-	Xaut_1427	-	hypothetical protein
1417	 65.62	0	1636659..1637042	-	127	154245375	-	Xaut_1428	-	protein of unknown function DUF861 cupin_3
1418	 70.24	0	1637017..1638417	-	466	154245376	-	Xaut_1429	-	major facilitator transporter
1419	 69.00	0	1638511..1638810	-	99	154245377	-	Xaut_1430	-	hypothetical protein
1420	 70.95	0	1638980..1640800	+	606	154245378	-	Xaut_1431	-	hypothetical protein
1421	 68.34	0	1640921..1645756	-	1611	154245379	-	Xaut_1432	-	NAD-glutamate dehydrogenase
1422	 66.67	0	1645996..1646634	+	212	154245380	-	Xaut_1433	-	uncharacterized peroxidase-related enzyme
1423	 71.50	+1	1646763..1647341	+	192	154245381	-	Xaut_1434	-	hypothetical protein
1424	 63.68	0	1647549..1648319	+	256	154245382	-	Xaut_1435	-	ABC transporter related
1425	 65.69	0	1648321..1649034	+	237	154245383	-	Xaut_1436	-	ABC transporter related
1426	 66.00	0	1649086..1650291	+	401	154245384	-	Xaut_1437	-	extracellular ligand-binding receptor
1427	 65.53	0	1650357..1651238	+	293	154245385	-	Xaut_1438	-	inner-membrane translocator
1428	 66.06	0	1651249..1652241	+	330	154245386	-	Xaut_1439	-	inner-membrane translocator
1429	 73.04	+1	1652344..1653489	-	381	154245387	-	Xaut_1440	-	benzoate transporter
1430	 71.90	+1	1653553..1654392	-	279	154245388	-	Xaut_1441	-	Beta-lactamase
1431	 69.99	0	1654392..1655234	-	280	154245389	-	Xaut_1442	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1432	 65.26	0	1655268..1655834	-	188	154245390	-	Xaut_1443	-	NnrU family protein
1433	 67.06	0	1656140..1656646	+	168	154245391	-	Xaut_1444	-	ErfK/YbiS/YcfS/YnhG family protein
1434	 65.78	0	1656680..1658146	-	488	154245392	-	Xaut_1445	-	citrate transporter
1435	 67.86	0	1658435..1661119	+	894	154245393	-	Xaut_1446	-	leucyl-tRNA synthetase
1436	 68.93	0	1661106..1661723	+	205	154245394	-	Xaut_1447	-	hypothetical protein
1437	 72.50	+1	1661727..1662755	+	342	154245395	-	Xaut_1448	-	DNA polymerase III subunit delta
1438	 69.53	0	1662766..1664127	-	453	154245396	-	Xaut_1449	-	major facilitator transporter
1439	 67.85	0	1664260..1664934	-	224	154245397	-	Xaut_1450	-	two component LuxR family transcriptional regulator
1440	 68.14	0	1665041..1665514	-	157	154245398	-	Xaut_1451	-	hypothetical protein
1441	 69.70	0	1665675..1666631	+	318	154245399	-	Xaut_1452	-	alpha/beta hydrolase domain-containing protein
1442	 72.62	+1	1666639..1667142	-	167	154245400	-	Xaut_1453	-	hypothetical protein
1443	 62.31	-1	1667390..1667710	-	106	154245401	-	Xaut_1454	-	cytochrome c oxidoreductase subunit B
1444	 66.50	0	1667722..1668942	-	406	154245402	-	Xaut_1455	-	oxidoreductase molybdopterin binding
1445	 70.39	0	1669097..1669741	-	214	154245403	-	Xaut_1456	-	DSBA oxidoreductase
1446	 70.41	0	1669847..1670140	+	97	154245404	-	Xaut_1457	-	hypothetical protein
1447	 69.35	0	1670137..1670583	+	148	154245405	-	Xaut_1458	-	hypothetical protein
1448	 71.00	0	1670657..1671118	-	153	154245406	-	Xaut_1459	-	DNA polymerase III chi subunit HolC
1449	 67.31	0	1671188..1671496	+	102	154245407	-	Xaut_1460	-	hypothetical protein
1450	 67.50	0	1671493..1671612	+	39	154245408	-	Xaut_1461	-	hypothetical protein
1451	 69.14	0	1671840..1673336	-	498	154245409	-	Xaut_1462	-	leucyl aminopeptidase
1452	 69.92	0	1673633..1674001	-	122	154245410	-	Xaut_1463	-	ribosomal protein S16
1453	 69.91	0	1674086..1675627	-	513	154245411	-	Xaut_1464	-	signal recognition particle protein
1454	 68.91	0	1675991..1676881	+	296	154245412	-	Xaut_1465	-	alpha/beta hydrolase fold
1455	 65.56	0	1676976..1677245	+	89	154245413	-	Xaut_1466	-	hypothetical protein
1456	 72.10	+1	1677252..1678577	+	441	154245414	-	Xaut_1467	-	MATE efflux family protein
67.51	MEAN

3.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.