IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1295	 67.10	0	1501173..1501403	+	76	154245253	-	Xaut_1305	-	hypothetical protein
1296	 72.30	+1	1501416..1503350	-	644	154245254	-	Xaut_1306	-	fusaric acid resistance protein region
1297	 72.08	+1	1503347..1503826	-	159	154245255	-	Xaut_1307	-	MarR family transcriptional regulator
1298	 66.30	0	1504249..1504524	+	91	154245256	-	Xaut_1308	-	hypothetical protein
1299	 74.52	+1	1504827..1505450	-	207	154245257	-	Xaut_1309	-	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
1300	 70.00	0	1505447..1506586	-	379	154245258	-	Xaut_1310	-	phosphonate metabolism protein PhnM
1301	 70.51	0	1506602..1507330	-	242	154245259	-	Xaut_1311	-	phosphonate C-P lyase system protein PhnL
1302	 69.17	0	1507507..1508304	-	265	154245260	-	Xaut_1312	-	phosphonates transport ATP-binding protein
1303	 65.22	0	1508301..1509200	-	299	154245261	-	Xaut_1313	-	phosphonate metabolism PhnJ
1304	 69.48	0	1509768..1511048	-	426	154245262	-	Xaut_1314	-	phosphonate metabolism
1305	 72.80	+1	1511053..1511688	-	211	154245263	-	Xaut_1315	-	phosphonate metabolism
1306	 71.66	+1	1511688..1512188	-	166	154245264	-	Xaut_1316	-	phosphonate metabolism PhnG
1307	 71.57	+1	1512320..1513135	+	271	154245265	-	Xaut_1317	-	GntR family transcriptional regulator
1308	 67.45	0	1513196..1513834	+	212	154245266	-	Xaut_1318	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1309	 68.06	0	1513842..1514705	-	287	154245267	-	Xaut_1319	-	phosphonate ABC transporter, inner membrane subunit
1310	 66.33	0	1514702..1515586	-	294	154245268	-	Xaut_1320	-	phosphonate ABC transporter, inner membrane subunit
1311	 62.05	-1	1515688..1516596	-	302	154245269	-	Xaut_1321	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
1312	 71.36	0	1516695..1517504	-	269	154245270	-	Xaut_1322	-	phosphonate ABC transporter, ATPase subunit
1313	 74.09	+1	1518073..1519338	-	421	154245271	-	Xaut_1323	-	amidase
1314	 69.71	0	1519415..1520497	-	360	154245272	-	Xaut_1324	-	polysaccharide deacetylase
1315	 68.67	0	1520617..1521465	+	282	154245273	-	Xaut_1325	-	pyridoxamine kinase
1316	 69.75	0	1521563..1522471	+	302	154245274	-	Xaut_1326	-	PhzF family phenazine biosynthesis protein
1317	 69.04	0	1522610..1523704	+	364	154245275	-	Xaut_1327	-	NADH:flavin oxidoreductase/NADH oxidase
1318	 69.62	0	1523701..1524444	+	247	154245276	-	Xaut_1328	-	NUDIX hydrolase
1319	 67.55	0	1524798..1526381	+	527	154245277	-	Xaut_1329	-	2-isopropylmalate synthase
1320	 66.26	0	1526778..1527764	+	328	154245278	-	Xaut_1330	-	hypothetical protein
1321	 68.61	0	1527966..1528427	+	153	154245279	-	Xaut_1331	-	hypothetical protein
1322	 66.40	0	1528439..1529938	+	499	154245280	-	Xaut_1332	-	hypothetical protein
1323	 63.05	-1	1530175..1530423	+	82	154245281	-	Xaut_1333	-	hypothetical protein
1324	 64.54	0	1530433..1531467	-	344	154245282	-	Xaut_1334	-	alcohol dehydrogenase
1325	 67.97	0	1531556..1532938	+	460	154245283	-	Xaut_1335	-	acetyl-CoA acetyltransferase
1326	 70.18	0	1532972..1534195	-	407	154245284	-	Xaut_1336	-	cobalamin synthesis protein P47K
1327	 70.83	0	1534666..1536705	+	679	154245285	-	Xaut_1337	-	Fis family GAF modulated sigma54 specific transcriptional regulator
1328	 67.70	0	1537131..1539062	+	643	154245286	-	Xaut_1338	-	hydantoinase/oxoprolinase
1329	 64.66	0	1539068..1539466	+	132	154245287	-	Xaut_1339	-	acetone carboxylase gamma subunit
1330	 67.78	0	1540375..1541727	+	450	154245288	-	Xaut_1341	-	hydantoinase/oxoprolinase
1331	 64.29	0	1541769..1544087	+	772	154245289	-	Xaut_1342	-	hydantoinase B/oxoprolinase
1332	 71.89	+1	1544084..1544926	+	280	154245290	-	Xaut_1343	-	hypothetical protein
1333	 64.75	0	1545068..1545952	+	294	154245291	-	Xaut_1344	-	putative signal peptide
1334	 70.99	0	1546066..1546920	-	284	154245292	-	Xaut_1345	-	hypothetical protein
1335	 63.23	-1	1546937..1548100	-	387	154245293	-	Xaut_1346	-	acyl-CoA dehydrogenase domain-containing protein
1336	 72.48	+1	1548118..1549494	-	458	154245294	-	Xaut_1347	-	MmgE/PrpD family protein
1337	 73.04	+1	1549506..1550336	-	276	154245295	-	Xaut_1348	-	HpcH/HpaI aldolase
1338	 67.63	0	1550664..1551806	+	380	154245296	-	Xaut_1349	-	L-carnitine dehydratase/bile acid-inducible protein F
1339	 72.24	+1	1551818..1552552	+	244	154245297	-	Xaut_1350	-	methyltransferase type 11
1340	 70.65	0	1552616..1553593	+	325	154245298	-	Xaut_1351	-	LysR family transcriptional regulator
1341	 65.13	0	1553724..1555022	+	432	154245299	-	Xaut_1352	-	extracellular ligand-binding receptor
1342	 67.22	0	1555099..1556004	+	301	154245300	-	Xaut_1353	-	inner-membrane translocator
1343	 67.59	0	1556007..1556981	+	324	154245301	-	Xaut_1354	-	inner-membrane translocator
1344	 68.53	0	1556978..1557727	+	249	154245302	-	Xaut_1355	-	ABC transporter related
1345	 68.88	0	1557730..1558407	+	225	154245303	-	Xaut_1356	-	ABC transporter related
1346	 69.95	0	1558404..1559867	+	487	154245304	-	Xaut_1357	-	aldehyde dehydrogenase
1347	 67.45	0	1559882..1560649	+	255	154245305	-	Xaut_1358	-	3-ketoacyl-(acyl-carrier-protein) reductase
1348	 65.35	0	1560872..1561861	+	329	154245306	-	Xaut_1359	-	beta-lactamase domain-containing protein
1349	 69.73	0	1561987..1563555	+	522	154245307	-	Xaut_1360	-	tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit
1350	 69.94	0	1563684..1564019	+	111	154245308	-	Xaut_1361	-	hypothetical protein
1351	 70.78	0	1564090..1565598	-	502	154245309	-	Xaut_1362	-	glycosyl transferase family protein
1352	 70.35	0	1565706..1566845	-	379	154245310	-	Xaut_1363	-	glycosyl transferase family protein
1353	 64.73	0	1567590..1567847	+	85	154245311	-	Xaut_1364	-	hypothetical protein
1354	 65.80	0	1567943..1568518	-	191	154245312	-	Xaut_1365	-	formaldehyde-activating protein
1355	 70.87	0	1568600..1569835	-	411	154245313	-	Xaut_1366	-	hypothetical protein
1356	 71.52	+1	1570039..1570944	+	301	154245314	-	Xaut_1367	-	metallophosphoesterase
1357	 70.76	0	1571115..1571627	+	170	154245315	-	Xaut_1368	-	hypothetical protein
1358	 68.98	0	1571844..1573097	+	417	154245316	-	Xaut_1369	-	major facilitator transporter
1359	 66.88	0	1573326..1573799	+	157	154245317	-	Xaut_1370	-	hypothetical protein
1360	 70.01	0	1573810..1574736	-	308	154245318	-	Xaut_1371	-	LysR family transcriptional regulator
1361	 67.76	0	1574872..1575330	+	152	154245319	-	Xaut_1372	-	DoxX family protein
1362	 68.35	0	1575483..1576490	-	335	154245320	-	Xaut_1373	-	polyprenyl synthetase
1363	 63.60	0	1576617..1576844	+	75	154245321	-	Xaut_1374	-	hypothetical protein
1364	 73.28	+1	1576834..1577604	+	256	154245322	-	Xaut_1375	-	methyltransferase small
1365	 69.93	0	1577717..1578604	+	295	154245323	-	Xaut_1376	-	peptidase S49
1366	 68.19	0	1578727..1580436	+	569	154245324	-	Xaut_1377	-	NAD synthetase
1367	 61.40	-1	1580411..1580695	-	94	154245325	-	Xaut_1378	-	hypothetical protein
1368	 72.96	+1	1580864..1583626	+	920	154245326	-	Xaut_1379	-	hypothetical protein
1369	 70.72	0	1583629..1583949	-	106	154245327	-	Xaut_1380	-	hypothetical protein
1370	 73.81	+1	1583993..1584874	-	293	154245328	-	Xaut_1381	-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
1371	 66.49	0	1585122..1586861	+	579	154245329	-	Xaut_1382	-	TPR repeat-containing protein
1372	 69.38	0	1586961..1588658	+	565	154245330	-	Xaut_1383	-	formate--tetrahydrofolate ligase
1373	 66.58	0	1588725..1589912	+	395	154245331	-	Xaut_1384	-	acetyl-CoA acetyltransferase
1374	 70.37	0	1590006..1590734	-	242	154245332	-	Xaut_1385	-	hypothetical protein
1375	 67.20	0	1590847..1591221	-	124	154245333	-	Xaut_1386	-	hypothetical protein
1376	 66.76	0	1591439..1592494	+	351	154245334	-	Xaut_1387	-	molybdenum cofactor biosynthesis protein A
1377	 70.61	0	1592847..1593860	+	337	154245335	-	Xaut_1388	-	hypothetical protein
1378	 71.96	+1	1593908..1594096	-	62	154245336	-	Xaut_1389	-	hypothetical protein
1379	 59.21	-2	1594205..1595197	-	330	154245337	-	Xaut_1390	-	patatin
1380	 70.18	0	1595303..1596355	-	350	154245338	-	Xaut_1391	-	sulfate ABC transporter, ATPase subunit
1381	 66.45	0	1596352..1597275	-	307	154245339	-	Xaut_1392	-	sulfate ABC transporter, inner membrane subunit CysW
1382	 67.84	0	1597272..1598126	-	284	154245340	-	Xaut_1393	-	sulfate ABC transporter, inner membrane subunit CysT
1383	 66.37	0	1598224..1599240	-	338	154245341	-	Xaut_1394	-	sulfate ABC transporter, periplasmic sulfate-binding protein
1384	 69.28	0	1599356..1600120	-	254	154245342	-	Xaut_1395	-	phosphoadenosine phosphosulfate reductase
1385	 69.84	0	1600125..1600628	-	167	154245343	-	Xaut_1396	-	hypothetical protein
1386	 66.43	0	1600615..1602270	-	551	154245344	-	Xaut_1397	-	nitrite/sulfite reductase hemoprotein beta subunit
1387	 72.06	+1	1602311..1602625	-	104	154245345	-	Xaut_1398	-	hypothetical protein
1388	 65.91	0	1602947..1603741	+	264	154245346	-	Xaut_1399	-	sulfate adenylyltransferase subunit 2
1389	 71.00	0	1603784..1605721	+	645	154245347	-	Xaut_1400	-	sulfate adenylyltransferase, large subunit
1390	 69.99	0	1605836..1606648	+	270	154245348	-	Xaut_1401	-	enoyl-CoA hydratase/isomerase
1391	 71.44	0	1607085..1608110	+	341	154245349	-	Xaut_1402	-	GntR family transcriptional regulator
1392	 66.85	0	1608722..1609261	+	179	154245350	-	Xaut_1403	-	hypothetical protein
1393	 65.25	0	1609369..1609791	-	140	154245351	-	Xaut_1404	-	Fe-S metabolism associated SufE
1394	 74.56	+1	1609927..1610382	-	151	154245352	-	Xaut_1405	-	hypothetical protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.