IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1252	 62.87	-1	1452082..1452555	-	157	154245210	-	Xaut_1262	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
1253	 60.99	-1	1452565..1452846	-	93	154245211	-	Xaut_1263	-	acyl carrier protein
1254	 70.82	0	1453194..1454831	-	545	154245212	-	Xaut_1264	-	acyl-CoA dehydrogenase domain-containing protein
1255	 68.11	0	1455090..1455992	-	300	154245213	-	Xaut_1265	-	protein of unknown function zinc metallopeptidase putative
1256	 72.67	+1	1456200..1456949	+	249	154245214	-	Xaut_1266	-	ribonuclease H
1257	 66.47	0	1457004..1458008	-	334	154245215	-	Xaut_1267	-	cytochrome d ubiquinol oxidase, subunit II
1258	 65.81	0	1458049..1459443	-	464	154245216	-	Xaut_1268	-	cytochrome bd ubiquinol oxidase subunit I
1259	 68.78	0	1460303..1462051	+	582	154245217	-	Xaut_1269	-	binding-protein-dependent transport systems inner membrane component
1260	 67.41	0	1462063..1463406	+	447	154245218	-	Xaut_1270	-	ABC transporter related
1261	 70.13	0	1463583..1464794	-	403	154245219	-	Xaut_1271	-	major facilitator transporter
1262	 73.01	+1	1464957..1466612	-	551	154245220	-	Xaut_1272	-	protein of unknown function DUF894 DitE
1263	 71.20	0	1466609..1467160	-	183	154245221	-	Xaut_1273	-	DoxX family protein
1264	 68.39	0	1467365..1469341	-	658	154245222	-	Xaut_1274	-	amidohydrolase 3
1265	 69.93	0	1469355..1469660	-	101	154245223	-	Xaut_1275	-	hypothetical protein
1266	 67.98	0	1469712..1470704	-	330	154245224	-	Xaut_1276	-	alpha/beta hydrolase fold
1267	 65.29	0	1470707..1471360	-	217	154245225	-	Xaut_1277	-	isochorismatase hydrolase
1268	 66.08	0	1471466..1471807	+	113	154245226	-	Xaut_1278	-	HxlR family transcriptional regulator
1269	 71.23	0	1472259..1473179	-	306	154245227	-	Xaut_1279	-	helix-turn-helix domain-containing protein
1270	 68.88	0	1473484..1474161	+	225	154245228	-	Xaut_1280	-	two component transcriptional regulator
1271	 69.33	0	1474158..1475507	+	449	154245229	-	Xaut_1281	-	integral membrane sensor signal transduction histidine kinase
1272	 72.85	+1	1475517..1476179	-	220	154245230	-	Xaut_1282	-	methyltransferase type 11
1273	 66.81	0	1476200..1476892	-	230	154245231	-	Xaut_1283	-	TPR repeat-containing protein
1274	 73.83	+1	1476956..1477765	-	269	154245232	-	Xaut_1284	-	short-chain dehydrogenase/reductase SDR
1275	 67.11	0	1477755..1478435	-	226	154245233	-	Xaut_1285	-	heme oxygenase family
1276	 73.23	+1	1478432..1479955	-	507	154245234	-	Xaut_1286	-	AMP-dependent synthetase and ligase
1277	 69.40	0	1479939..1480523	-	194	154245235	-	Xaut_1287	-	hypothetical protein
1278	 70.64	0	1481002..1481832	+	276	154245236	-	Xaut_1288	-	molybdopterin dehydrogenase FAD-binding
1279	 70.43	0	1481829..1484564	+	911	154245237	-	Xaut_1289	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
1280	 69.22	0	1484561..1485499	+	312	154245238	-	Xaut_1290	-	antibiotic biosynthesis monooxygenase
1281	 70.82	0	1485521..1487593	-	690	154245239	-	Xaut_1291	-	integral membrane sensor signal transduction histidine kinase
1282	 70.66	0	1487586..1488986	-	466	154245240	-	Xaut_1292	-	two component, sigma54 specific, Fis family transcriptional regulator
1283	 69.02	0	1489251..1490951	-	566	154245241	-	Xaut_1293	-	major facilitator transporter
1284	 70.41	0	1491318..1492118	+	266	154245242	-	Xaut_1294	-	short-chain dehydrogenase/reductase SDR
1285	 69.50	0	1492180..1493133	+	317	154245243	-	Xaut_1295	-	AraC family transcriptional regulator
1286	 70.72	0	1493150..1494457	-	435	154245244	-	Xaut_1296	-	major facilitator transporter
1287	 67.42	0	1494503..1494901	-	132	154245245	-	Xaut_1297	-	MarR family transcriptional regulator
1288	 69.44	0	1495069..1496328	-	419	154245246	-	Xaut_1298	-	putative ABC branched-chain amino transporter, periplasmic binding protein
1289	 60.67	-1	1496471..1496620	-	49	154245247	-	Xaut_1299	-	beta-lactamase-like protein
1290	 70.19	0	1496650..1497444	-	264	154245248	-	Xaut_1300	-	beta-lactamase domain-containing protein
1291	 65.98	0	1497686..1498120	+	144	154245249	-	Xaut_1301	-	MarR family transcriptional regulator
1292	 68.60	0	1498142..1498606	-	154	154245250	-	Xaut_1302	-	MarR family transcriptional regulator
1293	 65.56	0	1498815..1499354	+	179	154245251	-	Xaut_1303	-	glyoxalase/bleomycin resistance protein/dioxygenase
1294	 66.67	0	1499449..1501056	+	535	154245252	-	Xaut_1304	-	hypothetical protein
1295	 67.10	0	1501173..1501403	+	76	154245253	-	Xaut_1305	-	hypothetical protein
1296	 72.30	+1	1501416..1503350	-	644	154245254	-	Xaut_1306	-	fusaric acid resistance protein region
1297	 72.08	+1	1503347..1503826	-	159	154245255	-	Xaut_1307	-	MarR family transcriptional regulator
1298	 66.30	0	1504249..1504524	+	91	154245256	-	Xaut_1308	-	hypothetical protein
1299	 74.52	+1	1504827..1505450	-	207	154245257	-	Xaut_1309	-	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
1300	 70.00	0	1505447..1506586	-	379	154245258	-	Xaut_1310	-	phosphonate metabolism protein PhnM
1301	 70.51	0	1506602..1507330	-	242	154245259	-	Xaut_1311	-	phosphonate C-P lyase system protein PhnL
1302	 69.17	0	1507507..1508304	-	265	154245260	-	Xaut_1312	-	phosphonates transport ATP-binding protein
1303	 65.22	0	1508301..1509200	-	299	154245261	-	Xaut_1313	-	phosphonate metabolism PhnJ
1304	 69.48	0	1509768..1511048	-	426	154245262	-	Xaut_1314	-	phosphonate metabolism
1305	 72.80	+1	1511053..1511688	-	211	154245263	-	Xaut_1315	-	phosphonate metabolism
1306	 71.66	+1	1511688..1512188	-	166	154245264	-	Xaut_1316	-	phosphonate metabolism PhnG
1307	 71.57	+1	1512320..1513135	+	271	154245265	-	Xaut_1317	-	GntR family transcriptional regulator
1308	 67.45	0	1513196..1513834	+	212	154245266	-	Xaut_1318	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1309	 68.06	0	1513842..1514705	-	287	154245267	-	Xaut_1319	-	phosphonate ABC transporter, inner membrane subunit
1310	 66.33	0	1514702..1515586	-	294	154245268	-	Xaut_1320	-	phosphonate ABC transporter, inner membrane subunit
1311	 62.05	-1	1515688..1516596	-	302	154245269	-	Xaut_1321	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
1312	 71.36	0	1516695..1517504	-	269	154245270	-	Xaut_1322	-	phosphonate ABC transporter, ATPase subunit
1313	 74.09	+1	1518073..1519338	-	421	154245271	-	Xaut_1323	-	amidase
1314	 69.71	0	1519415..1520497	-	360	154245272	-	Xaut_1324	-	polysaccharide deacetylase
1315	 68.67	0	1520617..1521465	+	282	154245273	-	Xaut_1325	-	pyridoxamine kinase
1316	 69.75	0	1521563..1522471	+	302	154245274	-	Xaut_1326	-	PhzF family phenazine biosynthesis protein
1317	 69.04	0	1522610..1523704	+	364	154245275	-	Xaut_1327	-	NADH:flavin oxidoreductase/NADH oxidase
1318	 69.62	0	1523701..1524444	+	247	154245276	-	Xaut_1328	-	NUDIX hydrolase
1319	 67.55	0	1524798..1526381	+	527	154245277	-	Xaut_1329	-	2-isopropylmalate synthase
1320	 66.26	0	1526778..1527764	+	328	154245278	-	Xaut_1330	-	hypothetical protein
1321	 68.61	0	1527966..1528427	+	153	154245279	-	Xaut_1331	-	hypothetical protein
1322	 66.40	0	1528439..1529938	+	499	154245280	-	Xaut_1332	-	hypothetical protein
1323	 63.05	-1	1530175..1530423	+	82	154245281	-	Xaut_1333	-	hypothetical protein
1324	 64.54	0	1530433..1531467	-	344	154245282	-	Xaut_1334	-	alcohol dehydrogenase
1325	 67.97	0	1531556..1532938	+	460	154245283	-	Xaut_1335	-	acetyl-CoA acetyltransferase
1326	 70.18	0	1532972..1534195	-	407	154245284	-	Xaut_1336	-	cobalamin synthesis protein P47K
1327	 70.83	0	1534666..1536705	+	679	154245285	-	Xaut_1337	-	Fis family GAF modulated sigma54 specific transcriptional regulator
1328	 67.70	0	1537131..1539062	+	643	154245286	-	Xaut_1338	-	hydantoinase/oxoprolinase
1329	 64.66	0	1539068..1539466	+	132	154245287	-	Xaut_1339	-	acetone carboxylase gamma subunit
1330	 67.78	0	1540375..1541727	+	450	154245288	-	Xaut_1341	-	hydantoinase/oxoprolinase
1331	 64.29	0	1541769..1544087	+	772	154245289	-	Xaut_1342	-	hydantoinase B/oxoprolinase
1332	 71.89	+1	1544084..1544926	+	280	154245290	-	Xaut_1343	-	hypothetical protein
1333	 64.75	0	1545068..1545952	+	294	154245291	-	Xaut_1344	-	putative signal peptide
1334	 70.99	0	1546066..1546920	-	284	154245292	-	Xaut_1345	-	hypothetical protein
1335	 63.23	-1	1546937..1548100	-	387	154245293	-	Xaut_1346	-	acyl-CoA dehydrogenase domain-containing protein
1336	 72.48	+1	1548118..1549494	-	458	154245294	-	Xaut_1347	-	MmgE/PrpD family protein
1337	 73.04	+1	1549506..1550336	-	276	154245295	-	Xaut_1348	-	HpcH/HpaI aldolase
1338	 67.63	0	1550664..1551806	+	380	154245296	-	Xaut_1349	-	L-carnitine dehydratase/bile acid-inducible protein F
1339	 72.24	+1	1551818..1552552	+	244	154245297	-	Xaut_1350	-	methyltransferase type 11
1340	 70.65	0	1552616..1553593	+	325	154245298	-	Xaut_1351	-	LysR family transcriptional regulator
1341	 65.13	0	1553724..1555022	+	432	154245299	-	Xaut_1352	-	extracellular ligand-binding receptor
1342	 67.22	0	1555099..1556004	+	301	154245300	-	Xaut_1353	-	inner-membrane translocator
1343	 67.59	0	1556007..1556981	+	324	154245301	-	Xaut_1354	-	inner-membrane translocator
1344	 68.53	0	1556978..1557727	+	249	154245302	-	Xaut_1355	-	ABC transporter related
1345	 68.88	0	1557730..1558407	+	225	154245303	-	Xaut_1356	-	ABC transporter related
1346	 69.95	0	1558404..1559867	+	487	154245304	-	Xaut_1357	-	aldehyde dehydrogenase
1347	 67.45	0	1559882..1560649	+	255	154245305	-	Xaut_1358	-	3-ketoacyl-(acyl-carrier-protein) reductase
1348	 65.35	0	1560872..1561861	+	329	154245306	-	Xaut_1359	-	beta-lactamase domain-containing protein
1349	 69.73	0	1561987..1563555	+	522	154245307	-	Xaut_1360	-	tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit
1350	 69.94	0	1563684..1564019	+	111	154245308	-	Xaut_1361	-	hypothetical protein
1351	 70.78	0	1564090..1565598	-	502	154245309	-	Xaut_1362	-	glycosyl transferase family protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.