IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1204	 67.39	0	1396245..1396661	-	138	154245162	-	Xaut_1214	-	putative signal peptide protein
1205	 68.90	0	1397195..1397866	+	223	154245163	-	Xaut_1215	-	ErfK/YbiS/YcfS/YnhG family protein
1206	 67.52	0	1398254..1399783	+	509	154245164	-	Xaut_1216	-	histidyl-tRNA synthetase
1207	 68.95	0	1399877..1400401	-	174	154245165	-	Xaut_1217	-	GcrA cell cycle regulator
1208	 68.65	0	1401142..1402350	+	402	154245166	-	Xaut_1218	-	acetylornithine and succinylornithine aminotransferase
1209	 65.70	0	1402347..1403276	+	309	154245167	-	Xaut_1219	-	ornithine carbamoyltransferase
1210	 69.95	0	1403501..1404535	+	344	154245168	-	Xaut_1220	-	Hsp33-like chaperonin
1211	 72.67	+1	1404623..1405072	-	149	154245169	-	Xaut_1221	-	putative amidase protein
1212	 69.52	0	1405094..1408636	-	1180	154245170	-	Xaut_1222	-	Urea carboxylase
1213	 63.44	-1	1408640..1409290	-	216	154245171	-	Xaut_1223	-	hypothetical protein
1214	 70.36	0	1409302..1410114	-	270	154245172	-	Xaut_1224	-	hypothetical protein
1215	 68.36	0	1410126..1410950	-	274	154245173	-	Xaut_1225	-	ABC transporter related
1216	 65.93	0	1410947..1411759	-	270	154245174	-	Xaut_1226	-	binding-protein-dependent transport systems inner membrane component
1217	 65.22	0	1412001..1413104	-	367	154245175	-	Xaut_1227	-	NLPA lipoprotein
1218	 66.37	0	1413533..1414549	+	338	154245176	-	Xaut_1228	-	hypothetical protein
1219	 67.89	0	1414577..1416052	-	491	154245177	-	Xaut_1229	-	hypothetical protein
1220	 65.26	0	1416212..1416709	+	165	154245178	-	Xaut_1230	-	hypothetical protein
1221	 70.07	0	1416793..1418085	+	430	154245179	-	Xaut_1231	-	histidinol dehydrogenase
1222	 65.86	0	1418102..1418596	+	164	154245180	-	Xaut_1232	-	hypothetical protein
1223	 65.80	0	1418603..1419064	+	153	154245181	-	Xaut_1233	-	protein tyrosine phosphatase
1224	 67.41	0	1419191..1420543	-	450	154245182	-	Xaut_1234	-	gluconate transporter
1225	 69.12	0	1420732..1421301	-	189	154245183	-	Xaut_1235	-	carbohydrate kinase
1226	 69.68	0	1421504..1422598	+	364	154245184	-	Xaut_1236	-	periplasmic binding protein/LacI transcriptional regulator
1227	 67.42	0	1422781..1423047	+	88	154245185	-	Xaut_1237	-	hypothetical protein
1228	 65.47	0	1423114..1425114	-	666	154245186	-	Xaut_1238	-	RNA polymerase sigma factor RpoD
1229	 68.85	0	1425407..1427326	-	639	154245187	-	Xaut_1239	-	DNA primase
1230	 58.81	-2	1427479..1428522	-	347	154245188	-	Xaut_1240	-	acyltransferase 3
1231	 66.67	0	1429038..1430453	+	471	154245189	-	Xaut_1241	-	amino acid carrier protein
1232	 66.88	0	1430519..1430980	-	153	154245190	-	Xaut_1242	-	GatB/Yqey domain-containing protein
1233	 68.20	0	1431209..1432444	+	411	154245191	-	Xaut_1243	-	carbamoyl phosphate synthase small subunit
1234	 63.91	0	1432513..1433202	-	229	154245192	-	Xaut_1244	-	GntR family transcriptional regulator
1235	 62.82	-1	1433602..1434069	+	155	154245193	-	Xaut_1245	-	signal-transduction protein
1236	 68.62	0	1434343..1435572	+	409	154245194	-	Xaut_1246	-	formyl-coenzyme A transferase
1237	 65.43	0	1435679..1436974	+	431	154245195	-	Xaut_1247	-	major facilitator transporter
1238	 66.90	0	1437682..1438992	+	436	154245196	-	Xaut_1248	-	major facilitator transporter
1239	 66.22	0	1439158..1439379	-	73	154245197	-	Xaut_1249	-	hypothetical protein
1240	 69.59	0	1439578..1441221	-	547	154245198	-	Xaut_1250	-	glucose-6-phosphate isomerase
1241	 74.76	+1	1441306..1442034	-	242	154245199	-	Xaut_1251	-	6-phosphogluconolactonase
1242	 67.95	0	1442057..1443532	-	491	154245200	-	Xaut_1252	-	glucose-6-phosphate 1-dehydrogenase
1243	 66.23	0	1443945..1444175	-	76	154245201	-	Xaut_1253	-	ribosomal protein S21
1244	 69.29	0	1444417..1444683	-	88	154245202	-	Xaut_1254	-	hypothetical protein
1245	 70.81	0	1444880..1445989	-	369	154245203	-	Xaut_1255	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
1246	 71.22	0	1445993..1446475	-	160	154245204	-	Xaut_1256	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1247	 70.66	0	1446579..1447505	-	308	154245205	-	Xaut_1257	-	lipid A biosynthesis lauroyl acyltransferase
1248	 66.08	0	1447539..1448561	-	340	154245206	-	Xaut_1258	-	alcohol dehydrogenase
1249	 70.87	0	1448584..1449345	-	253	154245207	-	Xaut_1259	-	short-chain dehydrogenase/reductase SDR
1250	 68.93	0	1449359..1450642	-	427	154245208	-	Xaut_1260	-	3-oxoacyl-(acyl carrier protein) synthase II
1251	 70.77	0	1450896..1452089	-	397	154245209	-	Xaut_1261	-	3-oxoacyl-(acyl carrier protein) synthase II
1252	 62.87	-1	1452082..1452555	-	157	154245210	-	Xaut_1262	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
1253	 60.99	-1	1452565..1452846	-	93	154245211	-	Xaut_1263	-	acyl carrier protein
1254	 70.82	0	1453194..1454831	-	545	154245212	-	Xaut_1264	-	acyl-CoA dehydrogenase domain-containing protein
1255	 68.11	0	1455090..1455992	-	300	154245213	-	Xaut_1265	-	protein of unknown function zinc metallopeptidase putative
1256	 72.67	+1	1456200..1456949	+	249	154245214	-	Xaut_1266	-	ribonuclease H
1257	 66.47	0	1457004..1458008	-	334	154245215	-	Xaut_1267	-	cytochrome d ubiquinol oxidase, subunit II
1258	 65.81	0	1458049..1459443	-	464	154245216	-	Xaut_1268	-	cytochrome bd ubiquinol oxidase subunit I
1259	 68.78	0	1460303..1462051	+	582	154245217	-	Xaut_1269	-	binding-protein-dependent transport systems inner membrane component
1260	 67.41	0	1462063..1463406	+	447	154245218	-	Xaut_1270	-	ABC transporter related
1261	 70.13	0	1463583..1464794	-	403	154245219	-	Xaut_1271	-	major facilitator transporter
1262	 73.01	+1	1464957..1466612	-	551	154245220	-	Xaut_1272	-	protein of unknown function DUF894 DitE
1263	 71.20	0	1466609..1467160	-	183	154245221	-	Xaut_1273	-	DoxX family protein
1264	 68.39	0	1467365..1469341	-	658	154245222	-	Xaut_1274	-	amidohydrolase 3
1265	 69.93	0	1469355..1469660	-	101	154245223	-	Xaut_1275	-	hypothetical protein
1266	 67.98	0	1469712..1470704	-	330	154245224	-	Xaut_1276	-	alpha/beta hydrolase fold
1267	 65.29	0	1470707..1471360	-	217	154245225	-	Xaut_1277	-	isochorismatase hydrolase
1268	 66.08	0	1471466..1471807	+	113	154245226	-	Xaut_1278	-	HxlR family transcriptional regulator
1269	 71.23	0	1472259..1473179	-	306	154245227	-	Xaut_1279	-	helix-turn-helix domain-containing protein
1270	 68.88	0	1473484..1474161	+	225	154245228	-	Xaut_1280	-	two component transcriptional regulator
1271	 69.33	0	1474158..1475507	+	449	154245229	-	Xaut_1281	-	integral membrane sensor signal transduction histidine kinase
1272	 72.85	+1	1475517..1476179	-	220	154245230	-	Xaut_1282	-	methyltransferase type 11
1273	 66.81	0	1476200..1476892	-	230	154245231	-	Xaut_1283	-	TPR repeat-containing protein
1274	 73.83	+1	1476956..1477765	-	269	154245232	-	Xaut_1284	-	short-chain dehydrogenase/reductase SDR
1275	 67.11	0	1477755..1478435	-	226	154245233	-	Xaut_1285	-	heme oxygenase family
1276	 73.23	+1	1478432..1479955	-	507	154245234	-	Xaut_1286	-	AMP-dependent synthetase and ligase
1277	 69.40	0	1479939..1480523	-	194	154245235	-	Xaut_1287	-	hypothetical protein
1278	 70.64	0	1481002..1481832	+	276	154245236	-	Xaut_1288	-	molybdopterin dehydrogenase FAD-binding
1279	 70.43	0	1481829..1484564	+	911	154245237	-	Xaut_1289	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
1280	 69.22	0	1484561..1485499	+	312	154245238	-	Xaut_1290	-	antibiotic biosynthesis monooxygenase
1281	 70.82	0	1485521..1487593	-	690	154245239	-	Xaut_1291	-	integral membrane sensor signal transduction histidine kinase
1282	 70.66	0	1487586..1488986	-	466	154245240	-	Xaut_1292	-	two component, sigma54 specific, Fis family transcriptional regulator
1283	 69.02	0	1489251..1490951	-	566	154245241	-	Xaut_1293	-	major facilitator transporter
1284	 70.41	0	1491318..1492118	+	266	154245242	-	Xaut_1294	-	short-chain dehydrogenase/reductase SDR
1285	 69.50	0	1492180..1493133	+	317	154245243	-	Xaut_1295	-	AraC family transcriptional regulator
1286	 70.72	0	1493150..1494457	-	435	154245244	-	Xaut_1296	-	major facilitator transporter
1287	 67.42	0	1494503..1494901	-	132	154245245	-	Xaut_1297	-	MarR family transcriptional regulator
1288	 69.44	0	1495069..1496328	-	419	154245246	-	Xaut_1298	-	putative ABC branched-chain amino transporter, periplasmic binding protein
1289	 60.67	-1	1496471..1496620	-	49	154245247	-	Xaut_1299	-	beta-lactamase-like protein
1290	 70.19	0	1496650..1497444	-	264	154245248	-	Xaut_1300	-	beta-lactamase domain-containing protein
1291	 65.98	0	1497686..1498120	+	144	154245249	-	Xaut_1301	-	MarR family transcriptional regulator
1292	 68.60	0	1498142..1498606	-	154	154245250	-	Xaut_1302	-	MarR family transcriptional regulator
1293	 65.56	0	1498815..1499354	+	179	154245251	-	Xaut_1303	-	glyoxalase/bleomycin resistance protein/dioxygenase
1294	 66.67	0	1499449..1501056	+	535	154245252	-	Xaut_1304	-	hypothetical protein
1295	 67.10	0	1501173..1501403	+	76	154245253	-	Xaut_1305	-	hypothetical protein
1296	 72.30	+1	1501416..1503350	-	644	154245254	-	Xaut_1306	-	fusaric acid resistance protein region
1297	 72.08	+1	1503347..1503826	-	159	154245255	-	Xaut_1307	-	MarR family transcriptional regulator
1298	 66.30	0	1504249..1504524	+	91	154245256	-	Xaut_1308	-	hypothetical protein
1299	 74.52	+1	1504827..1505450	-	207	154245257	-	Xaut_1309	-	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
1300	 70.00	0	1505447..1506586	-	379	154245258	-	Xaut_1310	-	phosphonate metabolism protein PhnM
1301	 70.51	0	1506602..1507330	-	242	154245259	-	Xaut_1311	-	phosphonate C-P lyase system protein PhnL
1302	 69.17	0	1507507..1508304	-	265	154245260	-	Xaut_1312	-	phosphonates transport ATP-binding protein
1303	 65.22	0	1508301..1509200	-	299	154245261	-	Xaut_1313	-	phosphonate metabolism PhnJ
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.