IslandPathversion 1.0

IslandPath Analysis: Xanthobacter autotrophicus Py2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.51 STD DEV: 3.97
Xanthobacter autotrophicus Py2, complete genome - 1..5308934
4746 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1174	 68.62	0	1361125..1362099	-	324	154245132	-	Xaut_1184	-	putative nicotinic acid mononucleotide (NMN) biosynthesis protein
1175	 64.52	0	1362504..1363109	-	201	154245133	-	Xaut_1185	-	isopropylmalate isomerase small subunit
1176	 65.98	0	1363241..1363822	-	193	154245134	-	Xaut_1186	-	cytochrome B561
1177	 68.71	0	1363877..1364317	-	146	154245135	-	Xaut_1187	-	hypothetical protein
1178	 71.21	0	1364919..1367711	-	930	154245136	-	Xaut_1188	-	DEAD/DEAH box helicase domain-containing protein
1179	 68.80	0	1367894..1368829	+	311	154245137	-	Xaut_1189	-	hypothetical protein
1180	 67.92	0	1368892..1370091	+	399	154245138	-	Xaut_1190	-	cell division protein FtsW
1181	 72.43	+1	1370325..1371452	+	375	154245139	-	Xaut_1191	-	N-acetylglucosaminyl transferase
1182	 67.02	0	1371449..1372861	+	470	154245140	-	Xaut_1192	-	UDP-N-acetylmuramate--L-alanine ligase
1183	 56.49	-2	1372845..1373414	-	189	154245141	-	Xaut_1193	-	hypothetical protein
1184	 66.44	0	1373519..1373962	-	147	154245142	-	Xaut_1194	-	CMP/dCMP deaminase zinc-binding
1185	 66.74	0	1374082..1375365	-	427	154245143	-	Xaut_1195	-	crotonyl-CoA reductase
1186	 62.45	-1	1375633..1375869	+	78	154245144	-	Xaut_1196	-	transglycosylase-associated protein
1187	 67.33	0	1376066..1378039	+	657	154245145	-	Xaut_1197	-	methylmalonyl-CoA mutase, large subunit
1188	 70.85	0	1378137..1378829	+	230	154245146	-	Xaut_1198	-	hypothetical protein
1189	 73.15	+1	1378983..1379846	+	287	154245147	-	Xaut_1199	-	glyoxalase/bleomycin resistance protein/dioxygenase
1190	 66.24	0	1380019..1380954	+	311	154245148	-	Xaut_1200	-	hypothetical protein
1191	 72.56	+1	1381063..1381605	+	180	154245149	-	Xaut_1201	-	hypothetical protein
1192	 66.16	0	1381725..1383311	-	528	154245150	-	Xaut_1202	-	D-3-phosphoglycerate dehydrogenase
1193	 67.01	0	1383744..1384919	-	391	154245151	-	Xaut_1203	-	phosphoserine aminotransferase
1194	 66.31	0	1385046..1385885	-	279	154245152	-	Xaut_1204	-	ABC-3 protein
1195	 65.65	0	1385885..1386769	-	294	154245153	-	Xaut_1205	-	ABC-3 protein
1196	 68.22	0	1386982..1387881	-	299	154245154	-	Xaut_1206	-	ABC transporter related
1197	 67.49	0	1387878..1388852	-	324	154245155	-	Xaut_1207	-	periplasmic solute binding protein
1198	 70.59	0	1388952..1390988	-	678	154245156	-	Xaut_1208	-	potassium efflux system protein
1199	 72.28	+1	1391367..1392239	-	290	154245157	-	Xaut_1209	-	ABC transporter related
1200	 70.78	0	1392239..1393186	-	315	154245158	-	Xaut_1210	-	binding-protein-dependent transport systems inner membrane component
1201	 69.88	0	1393213..1394178	-	321	154245159	-	Xaut_1211	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
1202	 72.76	+1	1394225..1394782	-	185	154245160	-	Xaut_1212	-	flavin reductase domain-containing protein
1203	 70.64	0	1394985..1396193	+	402	154245161	-	Xaut_1213	-	alkanesulfonate monooxygenase
1204	 67.39	0	1396245..1396661	-	138	154245162	-	Xaut_1214	-	putative signal peptide protein
1205	 68.90	0	1397195..1397866	+	223	154245163	-	Xaut_1215	-	ErfK/YbiS/YcfS/YnhG family protein
1206	 67.52	0	1398254..1399783	+	509	154245164	-	Xaut_1216	-	histidyl-tRNA synthetase
1207	 68.95	0	1399877..1400401	-	174	154245165	-	Xaut_1217	-	GcrA cell cycle regulator
1208	 68.65	0	1401142..1402350	+	402	154245166	-	Xaut_1218	-	acetylornithine and succinylornithine aminotransferase
1209	 65.70	0	1402347..1403276	+	309	154245167	-	Xaut_1219	-	ornithine carbamoyltransferase
1210	 69.95	0	1403501..1404535	+	344	154245168	-	Xaut_1220	-	Hsp33-like chaperonin
1211	 72.67	+1	1404623..1405072	-	149	154245169	-	Xaut_1221	-	putative amidase protein
1212	 69.52	0	1405094..1408636	-	1180	154245170	-	Xaut_1222	-	Urea carboxylase
1213	 63.44	-1	1408640..1409290	-	216	154245171	-	Xaut_1223	-	hypothetical protein
1214	 70.36	0	1409302..1410114	-	270	154245172	-	Xaut_1224	-	hypothetical protein
1215	 68.36	0	1410126..1410950	-	274	154245173	-	Xaut_1225	-	ABC transporter related
1216	 65.93	0	1410947..1411759	-	270	154245174	-	Xaut_1226	-	binding-protein-dependent transport systems inner membrane component
1217	 65.22	0	1412001..1413104	-	367	154245175	-	Xaut_1227	-	NLPA lipoprotein
1218	 66.37	0	1413533..1414549	+	338	154245176	-	Xaut_1228	-	hypothetical protein
1219	 67.89	0	1414577..1416052	-	491	154245177	-	Xaut_1229	-	hypothetical protein
1220	 65.26	0	1416212..1416709	+	165	154245178	-	Xaut_1230	-	hypothetical protein
1221	 70.07	0	1416793..1418085	+	430	154245179	-	Xaut_1231	-	histidinol dehydrogenase
1222	 65.86	0	1418102..1418596	+	164	154245180	-	Xaut_1232	-	hypothetical protein
1223	 65.80	0	1418603..1419064	+	153	154245181	-	Xaut_1233	-	protein tyrosine phosphatase
1224	 67.41	0	1419191..1420543	-	450	154245182	-	Xaut_1234	-	gluconate transporter
1225	 69.12	0	1420732..1421301	-	189	154245183	-	Xaut_1235	-	carbohydrate kinase
1226	 69.68	0	1421504..1422598	+	364	154245184	-	Xaut_1236	-	periplasmic binding protein/LacI transcriptional regulator
1227	 67.42	0	1422781..1423047	+	88	154245185	-	Xaut_1237	-	hypothetical protein
1228	 65.47	0	1423114..1425114	-	666	154245186	-	Xaut_1238	-	RNA polymerase sigma factor RpoD
1229	 68.85	0	1425407..1427326	-	639	154245187	-	Xaut_1239	-	DNA primase
1230	 58.81	-2	1427479..1428522	-	347	154245188	-	Xaut_1240	-	acyltransferase 3
1231	 66.67	0	1429038..1430453	+	471	154245189	-	Xaut_1241	-	amino acid carrier protein
1232	 66.88	0	1430519..1430980	-	153	154245190	-	Xaut_1242	-	GatB/Yqey domain-containing protein
1233	 68.20	0	1431209..1432444	+	411	154245191	-	Xaut_1243	-	carbamoyl phosphate synthase small subunit
1234	 63.91	0	1432513..1433202	-	229	154245192	-	Xaut_1244	-	GntR family transcriptional regulator
1235	 62.82	-1	1433602..1434069	+	155	154245193	-	Xaut_1245	-	signal-transduction protein
1236	 68.62	0	1434343..1435572	+	409	154245194	-	Xaut_1246	-	formyl-coenzyme A transferase
1237	 65.43	0	1435679..1436974	+	431	154245195	-	Xaut_1247	-	major facilitator transporter
1238	 66.90	0	1437682..1438992	+	436	154245196	-	Xaut_1248	-	major facilitator transporter
1239	 66.22	0	1439158..1439379	-	73	154245197	-	Xaut_1249	-	hypothetical protein
1240	 69.59	0	1439578..1441221	-	547	154245198	-	Xaut_1250	-	glucose-6-phosphate isomerase
1241	 74.76	+1	1441306..1442034	-	242	154245199	-	Xaut_1251	-	6-phosphogluconolactonase
1242	 67.95	0	1442057..1443532	-	491	154245200	-	Xaut_1252	-	glucose-6-phosphate 1-dehydrogenase
1243	 66.23	0	1443945..1444175	-	76	154245201	-	Xaut_1253	-	ribosomal protein S21
1244	 69.29	0	1444417..1444683	-	88	154245202	-	Xaut_1254	-	hypothetical protein
1245	 70.81	0	1444880..1445989	-	369	154245203	-	Xaut_1255	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
1246	 71.22	0	1445993..1446475	-	160	154245204	-	Xaut_1256	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1247	 70.66	0	1446579..1447505	-	308	154245205	-	Xaut_1257	-	lipid A biosynthesis lauroyl acyltransferase
1248	 66.08	0	1447539..1448561	-	340	154245206	-	Xaut_1258	-	alcohol dehydrogenase
1249	 70.87	0	1448584..1449345	-	253	154245207	-	Xaut_1259	-	short-chain dehydrogenase/reductase SDR
1250	 68.93	0	1449359..1450642	-	427	154245208	-	Xaut_1260	-	3-oxoacyl-(acyl carrier protein) synthase II
1251	 70.77	0	1450896..1452089	-	397	154245209	-	Xaut_1261	-	3-oxoacyl-(acyl carrier protein) synthase II
1252	 62.87	-1	1452082..1452555	-	157	154245210	-	Xaut_1262	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
1253	 60.99	-1	1452565..1452846	-	93	154245211	-	Xaut_1263	-	acyl carrier protein
1254	 70.82	0	1453194..1454831	-	545	154245212	-	Xaut_1264	-	acyl-CoA dehydrogenase domain-containing protein
1255	 68.11	0	1455090..1455992	-	300	154245213	-	Xaut_1265	-	protein of unknown function zinc metallopeptidase putative
1256	 72.67	+1	1456200..1456949	+	249	154245214	-	Xaut_1266	-	ribonuclease H
1257	 66.47	0	1457004..1458008	-	334	154245215	-	Xaut_1267	-	cytochrome d ubiquinol oxidase, subunit II
1258	 65.81	0	1458049..1459443	-	464	154245216	-	Xaut_1268	-	cytochrome bd ubiquinol oxidase subunit I
1259	 68.78	0	1460303..1462051	+	582	154245217	-	Xaut_1269	-	binding-protein-dependent transport systems inner membrane component
1260	 67.41	0	1462063..1463406	+	447	154245218	-	Xaut_1270	-	ABC transporter related
1261	 70.13	0	1463583..1464794	-	403	154245219	-	Xaut_1271	-	major facilitator transporter
1262	 73.01	+1	1464957..1466612	-	551	154245220	-	Xaut_1272	-	protein of unknown function DUF894 DitE
1263	 71.20	0	1466609..1467160	-	183	154245221	-	Xaut_1273	-	DoxX family protein
1264	 68.39	0	1467365..1469341	-	658	154245222	-	Xaut_1274	-	amidohydrolase 3
1265	 69.93	0	1469355..1469660	-	101	154245223	-	Xaut_1275	-	hypothetical protein
1266	 67.98	0	1469712..1470704	-	330	154245224	-	Xaut_1276	-	alpha/beta hydrolase fold
1267	 65.29	0	1470707..1471360	-	217	154245225	-	Xaut_1277	-	isochorismatase hydrolase
1268	 66.08	0	1471466..1471807	+	113	154245226	-	Xaut_1278	-	HxlR family transcriptional regulator
1269	 71.23	0	1472259..1473179	-	306	154245227	-	Xaut_1279	-	helix-turn-helix domain-containing protein
1270	 68.88	0	1473484..1474161	+	225	154245228	-	Xaut_1280	-	two component transcriptional regulator
1271	 69.33	0	1474158..1475507	+	449	154245229	-	Xaut_1281	-	integral membrane sensor signal transduction histidine kinase
1272	 72.85	+1	1475517..1476179	-	220	154245230	-	Xaut_1282	-	methyltransferase type 11
1273	 66.81	0	1476200..1476892	-	230	154245231	-	Xaut_1283	-	TPR repeat-containing protein
67.51	MEAN

3.97	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.