IslandPathversion 1.0

IslandPath Analysis: Wolbachia pipientis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.35 STD DEV: 2.87
Wolbachia pipientis, complete genome - 1..1482455
1275 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
928	 35.69	0	1081384..1082274	+	296	190571406	-	WP1014	-	Ankyrin repeat domain protein
929	 37.52	+1	1082446..1083687	+	413	190571407	iscS	WP1015	-	cysteine desulfurase
930	 35.24	0	1083736..1084839	-	367	190571408	rodA	WP1016	-	rod shape-determining protein RodA
931	 33.20	0	1084885..1086333	-	482	190571409	-	WP1017	-	nadh dehydrogenase (quinone)
932	 31.05	-1	1086398..1086703	+	101	190571410	-	WP1018	-	NADH:ubiquinone oxidoreductase
933	 35.31	0	1086706..1087161	+	151	190571411	-	WP1019	-	Mammalian cell entry related protein
934	 35.51	0	1089300..1090172	-	290	190571412	-	WP1024	-	transposase
935	 36.15	0	1090266..1091222	-	318	190571413	fabH	WP1025	-	3-oxoacyl-(acyl-carrier-protein) synthase III
936	 35.84	0	1091215..1092252	-	345	190571414	plsX	WP1026	-	fatty acid/phospholipid synthesis protein PlsX
937	 37.16	0	1092261..1092443	-	60	190571415	rpmF	WP1027	-	ribosomal protein L32
938	 33.97	0	1092675..1093457	+	260	190571416	-	WP1028	-	hypothetical protein
939	 32.05	0	1093450..1094151	+	233	190571417	-	WP1029	-	ABC transporter, ATP-binding protein
940	 35.51	0	1095021..1095893	-	290	190571418	-	WP1031	-	transposase
941	 36.24	0	1096403..1097746	-	447	190571419	ffh	WP1032	-	signal recognition particle protein
942	 33.46	0	1097731..1099290	-	519	190571420	-	WP1033	-	Putative oxidoreductase
943	 36.20	0	1099594..1102662	-	1022	190571421	-	WP1034	-	hypothetical protein
944	 33.80	0	1102708..1103139	-	143	190571422	fabZ	WP1035	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase
945	 29.95	-1	1103144..1103704	-	186	190571423	-	WP1036	-	Outer membrane protein
946	 30.12	-1	1103705..1106038	-	777	190571424	-	WP1037	-	surface antigen
947	 33.78	0	1106046..1107161	-	371	190571425	-	WP1038	-	membrane-associated zinc metalloprotease
948	 32.60	0	1107255..1107527	+	90	190571426	-	WP1039	-	hypothetical protein
949	 31.45	-1	1107505..1107822	-	105	190571427	-	WP1040	-	hypothetical protein
950	 30.47	-1	1107866..1108144	-	92	190571428	-	WP1041	-	DNA-binding protein, HU family
951	 32.61	0	1108164..1109816	-	550	190571429	rpsA	WP1042	-	ribosomal protein S1
952	 30.70	-1	1109920..1110564	+	214	190571430	trmB	WP1043	-	trna (guanine-n(7)-)-methyltransferase (ec 2.1.1.33) (trna(m7g46)-methyltransferase)
953	 33.14	0	1110773..1111294	-	173	190571431	-	WP1044	-	hypothetical protein
954	 38.20	+1	1111417..1112814	-	465	190571432	-	WP1045	-	phage uncharacterized protein
955	 32.86	0	1112876..1113088	+	70	190571433	-	WP1046	-	hypothetical protein
956	 31.32	-1	1113123..1113965	+	280	190571434	-	WP1047	-	hypothetical protein
957	 35.51	0	1114225..1115097	-	290	190571435	-	WP1048	-	transposase
958	 35.34	0	1115640..1116737	-	365	190571436	-	WP1049	-	ATPase, AAA family
959	 29.46	-1	1116872..1118188	-	438	190571437	-	WP1050	-	hypothetical protein
960	 37.10	0	1118193..1121669	-	1158	190571438	-	WP1051	-	collagen triple helix repeat protein
961	 33.20	0	1122041..1123504	-	487	190571439	htrA	WP1052	-	protease DO
962	 31.39	-1	1123508..1124380	-	290	190571440	hflC	WP1053	-	hflC protein
963	 34.21	0	1124383..1125408	-	341	190571441	hflK	WP1054	-	hflK protein
964	 28.12	-2	1125531..1125818	-	95	190571442	-	WP1055	-	hypothetical protein
965	 34.86	0	1125823..1127652	-	609	190571443	mutL	WP1056	-	DNA mismatch repair protein MutL
966	 36.93	0	1127652..1128152	-	166	190571444	purE	WP1057	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
967	 29.97	-1	1129005..1129301	+	98	190571445	-	WP1058	-	Putative transcriptional regulator
968	 35.37	0	1129362..1129754	+	130	190571446	rpoZ	WP1059	-	DNA-directed RNA polymerase, omega subunit
969	 27.24	-2	1129784..1130029	+	81	190571447	-	WP1060	-	multiple resistance and ph regulation protein f
970	 30.04	-1	1130036..1130308	+	90	190571448	-	WP1061	-	multisubunit na+/h+ antiporter, mnhg subunit
971	 33.52	0	1130320..1130844	+	174	190571449	-	WP1062	-	hypothetical protein
972	 31.43	-1	1130837..1131256	+	139	190571450	-	WP1063	-	multisubunit na+/h+ antiporter, mnhb subunit
973	 28.71	-1	1131253..1131555	+	100	190571451	-	WP1064	-	multisubunit na+/h+ antiporter, mnhc subunit
974	 33.18	0	1131692..1133593	+	633	190571452	rpoD	WP1065	-	RNA polymerase sigma factor RpoD
975	 31.88	0	1135223..1135840	-	205	190571453	-	WP1067	-	hypothetical protein
976	 27.96	-2	1137600..1137971	+	123	190571454	sdhC	WP1068	-	succinate dehydrogenase, cytochrome b556 subunit
977	 30.87	-1	1137968..1138333	+	121	190571455	sdhD	WP1069	-	succinate dehydrogenase, hydrophobic membrane anchor protein
978	 33.98	0	1138410..1139642	+	410	190571456	-	WP1070	-	hypothetical protein
979	 34.41	0	1139761..1141062	+	433	190571457	-	WP1071	-	mannose-1-phosphate guanylyltransferase
980	 33.98	0	1141179..1142408	+	409	190571458	lolC	WP1072	-	lipoprotein releasing system transmembrane protein lolc
981	 30.46	-1	1142401..1143132	+	243	190571459	-	WP1073	-	hypothetical protein
982	 30.36	-1	1144515..1145387	+	290	190571460	atpG	WP1075	-	ATP synthase F1, gamma subunit
983	 33.03	0	1145406..1146740	+	444	190571461	pmbA	WP1076	-	pmbA protein
984	 35.71	0	1146915..1147166	+	83	190571462	-	WP1077	-	cold-shock domain family protein
985	 38.55	+1	1147201..1148427	+	408	190571463	-	WP1078	-	ATP-dependent RNA helicase, DeaD/DeaH box family
986	 34.12	0	1148725..1151004	+	759	190571464	clpA	WP1079	-	ATP-dependent Clp protease, ATP-binding subunit ClpA
987	 33.63	0	1151061..1152059	+	332	190571465	-	WP1080	-	dnaj domain protein
988	 38.61	+1	1152118..1153008	+	296	190571466	fba	WP1081	-	fructose-bisphosphate aldolase
989	 34.21	0	1153193..1153990	+	265	190571467	-	WP1082	-	putative lipoprotein
990	 33.90	0	1154063..1155130	+	355	190571468	pyrD	WP1083	-	dihydroorotate dehydrogenase
991	 34.78	0	1155223..1155915	+	230	190571469	rnc	WP1084	-	ribonuclease III
992	 31.67	0	1155968..1156567	-	199	190571470	-	WP1085	-	SCO1/SenC family protein
993	 33.76	0	1156603..1157307	-	234	190571471	dnaQ	WP1086	-	DNA polymerase III, epsilon subunit
994	 28.33	-2	1157307..1157966	-	219	190571472	-	WP1087	-	Tim44-like domain protein
995	 32.54	0	1158131..1158634	+	167	190571473	secB	WP1088	-	protein-export protein SecB
996	 37.80	+1	1158641..1161262	+	873	190571474	acnA	WP1089	-	aconitate hydratase
997	 36.71	0	1161384..1164524	+	1046	190571475	putA	WP1090	-	proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase
998	 33.49	0	1164691..1165332	+	213	190571476	-	WP1091	-	dioxygenase
999	 38.34	+1	1165387..1166925	+	512	190571477	pepA	WP1092	-	cytosol aminopeptidase
1000	 40.38	+2	1167183..1167395	+	70	190571478	-	WP1093	-	hypothetical protein
1001	 37.63	+1	1167401..1169449	+	682	190571479	nuoG	WP1094	-	NADH dehydrogenase I, G subunit
1002	 28.44	-2	1169433..1169882	+	149	190571480	-	WP1095	-	hypothetical protein
1003	 36.35	0	1169866..1170891	+	341	190571481	nuoH	WP1096	-	NADH dehydrogenase I, H subunit
1004	 35.94	0	1170884..1171882	+	332	190571482	hemB	WP1097	-	delta-aminolevulinic acid dehydratase
1005	 35.51	0	1172261..1173133	+	290	190571483	-	WP1098	-	transposase
1006	 35.51	0	1173875..1174747	-	290	190571484	-	WP1100	-	transposase
1007	 33.73	0	1175516..1178044	-	842	190571485	polA	WP1101	-	DNA polymerase I
1008	 37.42	+1	1178156..1179622	-	488	190571486	gatA	WP1102	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
1009	 35.78	0	1179809..1182181	-	790	190571487	gyrB	WP1103	-	DNA gyrase, B subunit
1010	 32.68	0	1182403..1183635	-	410	190571488	-	WP1104	-	hypothetical protein
1011	 35.07	0	1183706..1184569	-	287	190571489	-	WP1105	-	ankyrin repeat domain protein
1012	 33.77	0	1184804..1185487	+	227	190571490	psd	WP1106	-	phosphatidylserine decarboxylase proenzyme (ec 4.1.1.65) [contains: phosphatidylserine decarboxylase alpha chain; phosphatidylserine decarboxylase beta chain]
1013	 31.13	-1	1185484..1186254	+	256	190571491	-	WP1107	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1014	 34.38	0	1186277..1187614	+	445	190571492	-	WP1108	-	sodium/alanine symporter family protein
1015	 37.15	0	1187617..1189083	+	488	190571493	-	WP1109	-	sodium/alanine symporter family protein
1016	 33.16	0	1189096..1189671	+	191	190571494	-	WP1110	-	UPF0078 membrane protein
1017	 35.51	0	1190221..1191093	-	290	190571495	-	WP1112	-	transposase
1018	 31.24	-1	1191159..1192970	-	603	190571496	-	WP1113	-	hypothetical protein
1019	 34.00	0	1193026..1193922	-	298	190571497	-	WP1114	-	cation efflux family protein
1020	 34.90	0	1198121..1198312	+	63	190571498	-	WP1116	-	hypothetical protein
1021	 36.31	0	1198314..1199624	+	436	190571499	-	WP1117	-	hypothetical protein
1022	 33.33	0	1199715..1200482	-	255	190571500	-	WP1118	-	RNA methyltransferase, TrmH family, group 3
1023	 28.86	-1	1200575..1201066	+	163	190571501	-	WP1119	-	Smr domain family protein
1024	 34.32	0	1201078..1202895	-	605	190571502	uvrC	WP1120	-	excinuclease ABC, C subunit
1025	 33.19	0	1202879..1204987	-	702	190571503	glyS	WP1121	-	glycyl-tRNA synthetase, beta subunit
1026	 37.50	+1	1204991..1205830	-	279	190571504	glyQ	WP1122	-	glycyl-tRNA synthetase, alpha subunit
1027	 31.23	-1	1205875..1206633	-	252	190571505	-	WP1123	-	hypothetical protein
34.35	MEAN

2.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.