IslandPathversion 1.0

IslandPath Analysis: Wolbachia pipientis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.35 STD DEV: 2.87
Wolbachia pipientis, complete genome - 1..1482455
1275 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
889	 42.65	+2	1043404..1043682	+	92	190571367	-	WP0974	-	hypothetical protein
890	 37.67	+1	1045042..1046286	+	414	190571368	-	WP0976	-	Putative reverse transcriptase
891	 40.74	+2	1047071..1047232	+	53	190571369	-	WP0977	-	hypothetical protein
892	 27.67	-2	1047251..1047886	+	211	190571370	-	WP0978	-	chromosomal DNA replication initiator-related protein
893	 19.88	-2	1048098..1048268	+	56	190571371	-	WP0979	-	hypothetical protein
894	 30.70	-1	1048258..1049244	+	328	190571372	-	WP0980	-	site-specific recombinase, phage integrase family
895	 30.58	-1	1049301..1050026	+	241	190571373	-	WP0981	-	1-acyl-sn-glycerol-3-phosphate acyltransferase family protein
896	 33.70	0	1050070..1050339	+	89	190571374	rpsT	WP0982	-	ribosomal protein S20
897	 35.43	0	1050419..1051660	+	413	190571375	gltA	WP0983	-	citrate synthase
898	 34.04	0	1051705..1053114	-	469	190571376	-	WP0984	-	hypothetical protein
899	 33.33	0	1053141..1053305	-	54	190571377	-	WP0985	-	hypothetical protein
900	 35.14	0	1053533..1054747	-	404	190571378	-	WP0986	-	hypothetical protein
901	 38.18	+1	1055016..1056005	-	329	190571379	ruvB	WP0987	-	Holliday junction DNA helicase RuvB
902	 33.86	0	1056002..1056574	-	190	190571380	ruvA	WP0988	-	Holliday junction DNA helicase RuvA
903	 38.48	+1	1056874..1057398	+	174	190571381	-	WP0989	-	cytochrome c family protein
904	 33.07	0	1057400..1058155	+	251	190571382	-	WP0990	-	hydrolase, alpha/beta fold family
905	 35.01	0	1058198..1060111	-	637	190571383	uvrD	WP0991	-	helicase II, UvrD
906	 32.86	0	1060225..1060650	-	141	190571384	-	WP0992	-	hypothetical protein
907	 36.22	0	1060837..1061424	+	195	190571385	nuoJ	WP0993	-	NADH dehydrogenase I, J subunit
908	 33.66	0	1061415..1061723	+	102	190571386	nuoK	WP0994	-	NADH dehydrogenase I, K subunit
909	 35.06	0	1061720..1063567	+	615	190571387	nuoL	WP0995	-	NADH dehydrogenase I, L subunit
910	 34.86	0	1063571..1065013	+	480	190571388	nuoM	WP0996	-	NADH dehydrogenase I, M subunit
911	 33.77	0	1065010..1066395	+	461	190571389	nuoN	WP0997	-	NADH dehydrogenase I, N subunit
912	 35.01	0	1066400..1067236	+	278	190571390	birA	WP0998	-	biotin-[acetyl-coa-carboxylase] ligase
913	 25.36	-2	1067233..1067370	+	45	190571391	-	WP0999	-	hypothetical protein
914	 33.08	0	1067354..1067746	+	130	190571392	ccmE	WP1000	-	cytochrome c-type biogenesis protein CcmE
915	 34.62	0	1067822..1068286	-	154	190571393	-	WP1001	-	hypothetical protein
916	 34.68	0	1068381..1068824	-	147	190571394	-	WP1002	-	hypothetical protein
917	 33.47	0	1068871..1070316	-	481	190571395	-	WP1003	-	hypothetical protein
918	 38.44	+1	1070983..1072236	+	417	190571396	nuoF	WP1004	-	NADH dehydrogenase I, F subunit
919	 34.30	0	1072259..1072777	-	172	190571397	infC	WP1005	-	translation initiation factor IF-3
920	 37.22	+1	1072790..1074691	-	633	190571398	thrS	WP1006	-	threonyl-tRNA synthetase
921	 37.70	+1	1074688..1074870	-	60	190571399	-	WP1007	-	hypothetical protein
922	 39.75	+1	1074877..1075359	-	160	190571400	nuoI	WP1008	-	NADH dehydrogenase I, I subunit
923	 35.52	0	1075557..1076885	+	442	190571401	trmE	WP1009	-	tRNA modification GTPase TrmE
924	 36.22	0	1077188..1078192	+	334	190571402	-	WP1010	-	pyridine nucleotide-disulphide oxidoreductase family protein
925	 38.99	+1	1078581..1078739	+	52	190571403	-	WP1011	-	hypothetical protein
926	 35.51	0	1078805..1079677	+	290	190571404	-	WP1012	-	transposase
927	 40.59	+2	1079829..1081262	+	477	190571405	-	WP1013	-	phage uncharacterized protein
928	 35.69	0	1081384..1082274	+	296	190571406	-	WP1014	-	Ankyrin repeat domain protein
929	 37.52	+1	1082446..1083687	+	413	190571407	iscS	WP1015	-	cysteine desulfurase
930	 35.24	0	1083736..1084839	-	367	190571408	rodA	WP1016	-	rod shape-determining protein RodA
931	 33.20	0	1084885..1086333	-	482	190571409	-	WP1017	-	nadh dehydrogenase (quinone)
932	 31.05	-1	1086398..1086703	+	101	190571410	-	WP1018	-	NADH:ubiquinone oxidoreductase
933	 35.31	0	1086706..1087161	+	151	190571411	-	WP1019	-	Mammalian cell entry related protein
934	 35.51	0	1089300..1090172	-	290	190571412	-	WP1024	-	transposase
935	 36.15	0	1090266..1091222	-	318	190571413	fabH	WP1025	-	3-oxoacyl-(acyl-carrier-protein) synthase III
936	 35.84	0	1091215..1092252	-	345	190571414	plsX	WP1026	-	fatty acid/phospholipid synthesis protein PlsX
937	 37.16	0	1092261..1092443	-	60	190571415	rpmF	WP1027	-	ribosomal protein L32
938	 33.97	0	1092675..1093457	+	260	190571416	-	WP1028	-	hypothetical protein
939	 32.05	0	1093450..1094151	+	233	190571417	-	WP1029	-	ABC transporter, ATP-binding protein
940	 35.51	0	1095021..1095893	-	290	190571418	-	WP1031	-	transposase
941	 36.24	0	1096403..1097746	-	447	190571419	ffh	WP1032	-	signal recognition particle protein
942	 33.46	0	1097731..1099290	-	519	190571420	-	WP1033	-	Putative oxidoreductase
943	 36.20	0	1099594..1102662	-	1022	190571421	-	WP1034	-	hypothetical protein
944	 33.80	0	1102708..1103139	-	143	190571422	fabZ	WP1035	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase
945	 29.95	-1	1103144..1103704	-	186	190571423	-	WP1036	-	Outer membrane protein
946	 30.12	-1	1103705..1106038	-	777	190571424	-	WP1037	-	surface antigen
947	 33.78	0	1106046..1107161	-	371	190571425	-	WP1038	-	membrane-associated zinc metalloprotease
948	 32.60	0	1107255..1107527	+	90	190571426	-	WP1039	-	hypothetical protein
949	 31.45	-1	1107505..1107822	-	105	190571427	-	WP1040	-	hypothetical protein
950	 30.47	-1	1107866..1108144	-	92	190571428	-	WP1041	-	DNA-binding protein, HU family
951	 32.61	0	1108164..1109816	-	550	190571429	rpsA	WP1042	-	ribosomal protein S1
952	 30.70	-1	1109920..1110564	+	214	190571430	trmB	WP1043	-	trna (guanine-n(7)-)-methyltransferase (ec 2.1.1.33) (trna(m7g46)-methyltransferase)
953	 33.14	0	1110773..1111294	-	173	190571431	-	WP1044	-	hypothetical protein
954	 38.20	+1	1111417..1112814	-	465	190571432	-	WP1045	-	phage uncharacterized protein
955	 32.86	0	1112876..1113088	+	70	190571433	-	WP1046	-	hypothetical protein
956	 31.32	-1	1113123..1113965	+	280	190571434	-	WP1047	-	hypothetical protein
957	 35.51	0	1114225..1115097	-	290	190571435	-	WP1048	-	transposase
958	 35.34	0	1115640..1116737	-	365	190571436	-	WP1049	-	ATPase, AAA family
959	 29.46	-1	1116872..1118188	-	438	190571437	-	WP1050	-	hypothetical protein
960	 37.10	0	1118193..1121669	-	1158	190571438	-	WP1051	-	collagen triple helix repeat protein
961	 33.20	0	1122041..1123504	-	487	190571439	htrA	WP1052	-	protease DO
962	 31.39	-1	1123508..1124380	-	290	190571440	hflC	WP1053	-	hflC protein
963	 34.21	0	1124383..1125408	-	341	190571441	hflK	WP1054	-	hflK protein
964	 28.12	-2	1125531..1125818	-	95	190571442	-	WP1055	-	hypothetical protein
965	 34.86	0	1125823..1127652	-	609	190571443	mutL	WP1056	-	DNA mismatch repair protein MutL
966	 36.93	0	1127652..1128152	-	166	190571444	purE	WP1057	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
967	 29.97	-1	1129005..1129301	+	98	190571445	-	WP1058	-	Putative transcriptional regulator
968	 35.37	0	1129362..1129754	+	130	190571446	rpoZ	WP1059	-	DNA-directed RNA polymerase, omega subunit
969	 27.24	-2	1129784..1130029	+	81	190571447	-	WP1060	-	multiple resistance and ph regulation protein f
970	 30.04	-1	1130036..1130308	+	90	190571448	-	WP1061	-	multisubunit na+/h+ antiporter, mnhg subunit
971	 33.52	0	1130320..1130844	+	174	190571449	-	WP1062	-	hypothetical protein
972	 31.43	-1	1130837..1131256	+	139	190571450	-	WP1063	-	multisubunit na+/h+ antiporter, mnhb subunit
973	 28.71	-1	1131253..1131555	+	100	190571451	-	WP1064	-	multisubunit na+/h+ antiporter, mnhc subunit
974	 33.18	0	1131692..1133593	+	633	190571452	rpoD	WP1065	-	RNA polymerase sigma factor RpoD
975	 31.88	0	1135223..1135840	-	205	190571453	-	WP1067	-	hypothetical protein
976	 27.96	-2	1137600..1137971	+	123	190571454	sdhC	WP1068	-	succinate dehydrogenase, cytochrome b556 subunit
977	 30.87	-1	1137968..1138333	+	121	190571455	sdhD	WP1069	-	succinate dehydrogenase, hydrophobic membrane anchor protein
978	 33.98	0	1138410..1139642	+	410	190571456	-	WP1070	-	hypothetical protein
979	 34.41	0	1139761..1141062	+	433	190571457	-	WP1071	-	mannose-1-phosphate guanylyltransferase
980	 33.98	0	1141179..1142408	+	409	190571458	lolC	WP1072	-	lipoprotein releasing system transmembrane protein lolc
981	 30.46	-1	1142401..1143132	+	243	190571459	-	WP1073	-	hypothetical protein
982	 30.36	-1	1144515..1145387	+	290	190571460	atpG	WP1075	-	ATP synthase F1, gamma subunit
983	 33.03	0	1145406..1146740	+	444	190571461	pmbA	WP1076	-	pmbA protein
984	 35.71	0	1146915..1147166	+	83	190571462	-	WP1077	-	cold-shock domain family protein
985	 38.55	+1	1147201..1148427	+	408	190571463	-	WP1078	-	ATP-dependent RNA helicase, DeaD/DeaH box family
986	 34.12	0	1148725..1151004	+	759	190571464	clpA	WP1079	-	ATP-dependent Clp protease, ATP-binding subunit ClpA
987	 33.63	0	1151061..1152059	+	332	190571465	-	WP1080	-	dnaj domain protein
988	 38.61	+1	1152118..1153008	+	296	190571466	fba	WP1081	-	fructose-bisphosphate aldolase
34.35	MEAN

2.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.