IslandPathversion 1.0

IslandPath Analysis: Wolbachia pipientis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.35 STD DEV: 2.87
Wolbachia pipientis, complete genome - 1..1482455
1275 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
815	 35.93	0	963371..964756	+	461	190571293	lpdA	WP0896	-	lipoamide dehydrogenase, pyruvate dehydrogenase complex, E3 component
816	 32.50	0	964758..965117	-	119	190571294	-	WP0897	-	hypothetical protein
817	 34.80	0	965191..966213	+	340	190571295	murG	WP0898	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
818	 32.47	0	966198..967124	-	308	190571296	gshB	WP0899	-	glutathione synthetase
819	 33.55	0	967188..967655	+	155	190571297	bcp	WP0900	-	bacterioferritin comigratory protein
820	 32.13	0	967664..968743	+	359	190571298	recF	WP0901	-	recF protein
821	 33.85	0	968759..969919	-	386	190571299	lysC	WP0902	-	aspartokinase
822	 36.30	0	970009..971727	-	572	190571300	-	WP0903	-	glutathione-regulated potassium-efflux system protein
823	 31.76	0	971733..972305	-	190	190571301	-	WP0904	-	thiol-disulfide isomerase, thioredoxin family
824	 31.07	-1	972412..973029	+	205	190571302	tmk	WP0905	-	thymidylate kinase
825	 32.89	0	973334..975358	+	674	190571303	-	WP0906	-	ComEC/Rec2 family protein
826	 31.46	-1	975404..977215	+	603	190571304	-	WP0907	-	hypothetical protein
827	 34.92	0	977200..978147	+	315	190571305	-	WP0908	-	ribosomal large subunit pseudouridine synthase, RluD subfamily
828	 29.89	-1	978154..978501	-	115	190571306	dgkA	WP0909	-	diacylglycerol kinase
829	 35.51	0	978767..979639	+	290	190571307	-	WP0910	-	transposase
830	 38.52	+1	980486..983704	-	1072	190571308	carB	WP0913	-	carbamoyl-phosphate synthase, large subunit
831	 37.25	+1	983821..984561	-	246	190571309	-	WP0914	-	oxidoreductase, short-chain dehydrogenase/reductase family
832	 33.33	0	984572..985387	-	271	190571310	-	WP0915	-	ribonuclease, BN family
833	 40.38	+2	985516..985884	+	122	190571311	-	WP0916	-	hypothetical protein
834	 35.51	0	986001..986873	+	290	190571312	-	WP0917	-	transposase
835	 36.08	0	987529..988914	-	461	190571313	purF	WP0918	-	amidophosphoribosyltransferase
836	 26.90	-2	988938..989108	+	56	190571314	-	WP0919	-	hypothetical protein
837	 29.44	-1	989164..990396	+	410	190571315	-	WP0920	-	hypothetical protein
838	 36.17	0	990528..991055	-	175	190571316	-	WP0921	-	Coq7 family protein
839	 39.41	+1	991565..992338	-	257	190571317	-	WP0922	-	putative DNA glycosylase
840	 36.11	0	992328..992867	-	179	190571318	def	WP0923	-	polypeptide deformylase
841	 36.40	0	993005..994243	+	412	190571319	ftsA	WP0924	-	cell division protein FtsA
842	 35.89	0	994361..995143	+	260	190571320	map	WP0925	-	methionine aminopeptidase, type I
843	 34.41	0	995174..996385	-	403	190571321	-	WP0926	-	major facilitator family transporter
844	 35.37	0	996591..997475	+	294	190571322	mraW	WP0927	-	S-adenosyl-methyltransferase MraW
845	 35.51	0	997736..998608	-	290	190571323	-	WP0928	-	transposase
846	 31.00	-1	999428..999727	-	99	190571324	-	WP0929	-	oxidoreductase, putative
847	 34.64	0	999870..1000481	+	203	190571325	-	WP0930	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
848	 31.91	0	1000481..1001044	+	187	190571326	pth	WP0931	-	peptidyl-tRNA hydrolase
849	 35.77	0	1001079..1002146	-	355	190571327	recA	WP0932	-	recA protein
850	 37.40	+1	1002261..1002998	+	245	190571328	truA	WP0933	-	tRNA pseudouridine synthase A
851	 34.11	0	1003000..1004151	-	383	190571329	dnaN	WP0934	-	DNA polymerase III, beta subunit
852	 33.94	0	1004263..1004760	-	165	190571330	-	WP0935	-	hypothetical protein
853	 33.45	0	1004753..1005646	-	297	190571331	rpoH	WP0936	-	heat shock sigma factor RpoH
854	 37.85	+1	1005930..1006616	-	228	190571332	-	WP0937	-	surface antigen Wsp
855	 35.14	0	1006953..1007285	-	110	190571333	-	WP0938	-	hypothetical protein
856	 33.33	0	1007289..1008872	-	527	190571334	dnaX	WP0939	-	DNA polymerase III, gamma and tau subunits
857	 34.91	0	1009046..1009426	+	126	190571335	-	WP0940	-	hypothetical protein
858	 33.03	0	1009423..1010076	+	217	190571336	-	WP0941	-	glutathione S-transferase family protein
859	 30.38	-1	1010048..1010725	-	225	190571337	-	WP0942	-	O-methyltransferase family protein
860	 31.54	0	1010977..1011255	+	92	190571338	-	WP0943	-	hypothetical protein
861	 28.83	-1	1011284..1012015	-	243	190571339	-	WP0944	-	hypothetical protein
862	 31.60	0	1012030..1012491	-	153	190571340	-	WP0945	-	hypothetical protein
863	 31.45	-1	1012788..1013372	+	194	190571341	-	WP0946	-	hypothetical protein
864	 37.22	+1	1013369..1014679	+	436	190571342	folC	WP0947	-	folylpolyglutamate synthase
865	 34.63	0	1014685..1015071	-	128	190571343	-	WP0948	-	hypothetical protein
866	 34.18	0	1015423..1015896	-	157	190571344	-	WP0949	-	hypothetical protein
867	 36.55	0	1016103..1017533	+	476	190571345	tldD	WP0950	-	tldD protein
868	 35.51	0	1018295..1019167	-	290	190571346	-	WP0951	-	transposase
869	 38.00	+1	1019495..1020094	-	199	190571347	petA	WP0952	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
870	 37.62	+1	1020189..1022891	-	900	190571348	gyrA	WP0953	-	DNA gyrase, A subunit
871	 31.72	0	1023080..1023946	-	288	190571349	-	WP0954	-	TPR domain protein
872	 32.83	0	1024015..1024413	-	132	190571350	-	WP0955	-	hypothetical protein
873	 35.80	0	1024410..1024937	-	175	190571351	-	WP0956	-	bioY family protein
874	 37.70	+1	1025034..1025606	+	190	190571352	-	WP0957	-	nitroreductase family protein
875	 34.14	0	1025582..1026694	-	370	190571353	-	WP0958	-	glycosyl hydrolase, family 5 protein
876	 35.35	0	1026800..1027594	+	264	190571354	dapF	WP0959	-	diaminopimelate epimerase
877	 41.50	+2	1027601..1028482	-	293	190571355	sucD	WP0960	-	succinyl-CoA synthetase, alpha subunit
878	 35.23	0	1028486..1029646	-	386	190571356	sucC	WP0961	-	succinyl-CoA synthase, beta subunit
879	 35.32	0	1029677..1029877	-	66	190571357	rpsU	WP0962	-	ribosomal protein S21, putative
880	 34.48	0	1030272..1030967	-	231	190571358	-	WP0963	-	hypothetical protein
881	 36.61	0	1032356..1033180	-	274	190571359	-	WP0965	-	coproporphyrinogen III oxidase
882	 31.84	0	1033340..1035820	+	826	190571360	-	WP0966	-	membrane associated signal transduction histidine kinase and receiver domain
883	 36.42	0	1035907..1036749	+	280	190571361	-	WP0967	-	Chromosome partitioning protein,ParA family
884	 35.87	0	1036746..1037612	+	288	190571362	-	WP0968	-	Chromosome partitioning protein, ParB family
885	 34.25	0	1037697..1038902	-	401	190571363	-	WP0969	-	ispD/ispF bifunctional enzyme
886	 31.77	0	1039253..1039891	+	212	190571364	-	WP0970	-	hypothetical protein
887	 39.66	+1	1040903..1042246	+	447	190571365	-	WP0972	-	Putative reverse transcriptase
888	 42.79	+2	1043043..1043243	+	66	190571366	-	WP0973	-	hypothetical protein
889	 42.65	+2	1043404..1043682	+	92	190571367	-	WP0974	-	hypothetical protein
890	 37.67	+1	1045042..1046286	+	414	190571368	-	WP0976	-	Putative reverse transcriptase
891	 40.74	+2	1047071..1047232	+	53	190571369	-	WP0977	-	hypothetical protein
892	 27.67	-2	1047251..1047886	+	211	190571370	-	WP0978	-	chromosomal DNA replication initiator-related protein
893	 19.88	-2	1048098..1048268	+	56	190571371	-	WP0979	-	hypothetical protein
894	 30.70	-1	1048258..1049244	+	328	190571372	-	WP0980	-	site-specific recombinase, phage integrase family
895	 30.58	-1	1049301..1050026	+	241	190571373	-	WP0981	-	1-acyl-sn-glycerol-3-phosphate acyltransferase family protein
896	 33.70	0	1050070..1050339	+	89	190571374	rpsT	WP0982	-	ribosomal protein S20
897	 35.43	0	1050419..1051660	+	413	190571375	gltA	WP0983	-	citrate synthase
898	 34.04	0	1051705..1053114	-	469	190571376	-	WP0984	-	hypothetical protein
899	 33.33	0	1053141..1053305	-	54	190571377	-	WP0985	-	hypothetical protein
900	 35.14	0	1053533..1054747	-	404	190571378	-	WP0986	-	hypothetical protein
901	 38.18	+1	1055016..1056005	-	329	190571379	ruvB	WP0987	-	Holliday junction DNA helicase RuvB
902	 33.86	0	1056002..1056574	-	190	190571380	ruvA	WP0988	-	Holliday junction DNA helicase RuvA
903	 38.48	+1	1056874..1057398	+	174	190571381	-	WP0989	-	cytochrome c family protein
904	 33.07	0	1057400..1058155	+	251	190571382	-	WP0990	-	hydrolase, alpha/beta fold family
905	 35.01	0	1058198..1060111	-	637	190571383	uvrD	WP0991	-	helicase II, UvrD
906	 32.86	0	1060225..1060650	-	141	190571384	-	WP0992	-	hypothetical protein
907	 36.22	0	1060837..1061424	+	195	190571385	nuoJ	WP0993	-	NADH dehydrogenase I, J subunit
908	 33.66	0	1061415..1061723	+	102	190571386	nuoK	WP0994	-	NADH dehydrogenase I, K subunit
909	 35.06	0	1061720..1063567	+	615	190571387	nuoL	WP0995	-	NADH dehydrogenase I, L subunit
910	 34.86	0	1063571..1065013	+	480	190571388	nuoM	WP0996	-	NADH dehydrogenase I, M subunit
911	 33.77	0	1065010..1066395	+	461	190571389	nuoN	WP0997	-	NADH dehydrogenase I, N subunit
912	 35.01	0	1066400..1067236	+	278	190571390	birA	WP0998	-	biotin-[acetyl-coa-carboxylase] ligase
913	 25.36	-2	1067233..1067370	+	45	190571391	-	WP0999	-	hypothetical protein
914	 33.08	0	1067354..1067746	+	130	190571392	ccmE	WP1000	-	cytochrome c-type biogenesis protein CcmE
34.35	MEAN

2.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.