IslandPathversion 1.0

IslandPath Analysis: Wolbachia pipientis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.35 STD DEV: 2.87
Wolbachia pipientis, complete genome - 1..1482455
1275 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
790	 32.11	0	939764..940744	+	326	190571268	mraY	WP0869	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
791	 35.69	0	940750..941343	+	197	190571269	rnhB	WP0870	-	ribonuclease HII
792	 35.37	0	941351..942136	-	261	190571270	virB9	WP0871	-	Putative virB9 protein
793	 26.88	-2	942465..942743	-	92	190571271	-	WP0872	-	hypothetical protein
794	 30.07	-1	942815..943090	-	91	190571272	-	WP0873	-	hypothetical protein
795	 34.01	0	943228..944265	+	345	190571273	purM	WP0874	-	phosphoribosylformylglycinamidine cyclo-ligase
796	 32.64	0	944262..944984	-	240	190571274	purC	WP0875	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
797	 36.91	0	945050..945748	+	232	190571275	trmD	WP0876	-	tRNA (guanine-N1)-methyltransferase
798	 34.66	0	945745..946122	+	125	190571276	rplS	WP0877	-	ribosomal protein L19
799	 42.77	+2	946115..946273	-	52	190571277	-	WP0878	-	hypothetical protein
800	 33.81	0	946375..947628	+	417	190571278	-	WP0879	-	phosphate ABC transporter, permease protein, putative
801	 34.59	0	947625..948422	+	265	190571279	-	WP0880	-	phosphoribosylformylglycinamidine synthase I, putative
802	 37.37	+1	948511..949104	-	197	190571280	pdxH	WP0881	-	pyridoxamine 5'-phosphate oxidase
803	 32.97	0	949120..949935	-	271	190571281	mutM	WP0882	-	formamidopyrimidine-DNA glycosylase
804	 31.11	-1	949901..950035	-	44	190571282	-	WP0883	-	hypothetical protein
805	 31.88	0	950278..950553	-	91	190571283	-	WP0884	-	hypothetical protein
806	 26.64	-2	953298..954089	-	263	190571284	-	WP0887	-	Putative peptidase M61 family protein
807	 35.51	0	954396..955268	-	290	190571285	-	WP0888	-	transposase
808	 37.00	0	956182..957708	-	508	190571286	pccB	WP0889	-	propionyl-CoA carboxylase, beta subunit
809	 32.12	0	957833..958657	-	274	190571287	-	WP0890	-	hypothetical protein
810	 37.10	0	958793..960118	+	441	190571288	-	WP0891	-	GTP-binding protein
811	 32.36	0	960368..960676	+	102	190571289	-	WP0892	-	hypothetical protein
812	 31.48	0	960682..961275	+	197	190571290	-	WP0893	-	hypothetical protein
813	 35.57	0	961374..961865	+	163	190571291	-	WP0894	-	disulfide bond formation protein, DsbB family
814	 47.05	+2	961850..962731	+	293	190571292	-	WP0895	-	aminoglycoside phosphotransferase
815	 35.93	0	963371..964756	+	461	190571293	lpdA	WP0896	-	lipoamide dehydrogenase, pyruvate dehydrogenase complex, E3 component
816	 32.50	0	964758..965117	-	119	190571294	-	WP0897	-	hypothetical protein
817	 34.80	0	965191..966213	+	340	190571295	murG	WP0898	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
818	 32.47	0	966198..967124	-	308	190571296	gshB	WP0899	-	glutathione synthetase
819	 33.55	0	967188..967655	+	155	190571297	bcp	WP0900	-	bacterioferritin comigratory protein
820	 32.13	0	967664..968743	+	359	190571298	recF	WP0901	-	recF protein
821	 33.85	0	968759..969919	-	386	190571299	lysC	WP0902	-	aspartokinase
822	 36.30	0	970009..971727	-	572	190571300	-	WP0903	-	glutathione-regulated potassium-efflux system protein
823	 31.76	0	971733..972305	-	190	190571301	-	WP0904	-	thiol-disulfide isomerase, thioredoxin family
824	 31.07	-1	972412..973029	+	205	190571302	tmk	WP0905	-	thymidylate kinase
825	 32.89	0	973334..975358	+	674	190571303	-	WP0906	-	ComEC/Rec2 family protein
826	 31.46	-1	975404..977215	+	603	190571304	-	WP0907	-	hypothetical protein
827	 34.92	0	977200..978147	+	315	190571305	-	WP0908	-	ribosomal large subunit pseudouridine synthase, RluD subfamily
828	 29.89	-1	978154..978501	-	115	190571306	dgkA	WP0909	-	diacylglycerol kinase
829	 35.51	0	978767..979639	+	290	190571307	-	WP0910	-	transposase
830	 38.52	+1	980486..983704	-	1072	190571308	carB	WP0913	-	carbamoyl-phosphate synthase, large subunit
831	 37.25	+1	983821..984561	-	246	190571309	-	WP0914	-	oxidoreductase, short-chain dehydrogenase/reductase family
832	 33.33	0	984572..985387	-	271	190571310	-	WP0915	-	ribonuclease, BN family
833	 40.38	+2	985516..985884	+	122	190571311	-	WP0916	-	hypothetical protein
834	 35.51	0	986001..986873	+	290	190571312	-	WP0917	-	transposase
835	 36.08	0	987529..988914	-	461	190571313	purF	WP0918	-	amidophosphoribosyltransferase
836	 26.90	-2	988938..989108	+	56	190571314	-	WP0919	-	hypothetical protein
837	 29.44	-1	989164..990396	+	410	190571315	-	WP0920	-	hypothetical protein
838	 36.17	0	990528..991055	-	175	190571316	-	WP0921	-	Coq7 family protein
839	 39.41	+1	991565..992338	-	257	190571317	-	WP0922	-	putative DNA glycosylase
840	 36.11	0	992328..992867	-	179	190571318	def	WP0923	-	polypeptide deformylase
841	 36.40	0	993005..994243	+	412	190571319	ftsA	WP0924	-	cell division protein FtsA
842	 35.89	0	994361..995143	+	260	190571320	map	WP0925	-	methionine aminopeptidase, type I
843	 34.41	0	995174..996385	-	403	190571321	-	WP0926	-	major facilitator family transporter
844	 35.37	0	996591..997475	+	294	190571322	mraW	WP0927	-	S-adenosyl-methyltransferase MraW
845	 35.51	0	997736..998608	-	290	190571323	-	WP0928	-	transposase
846	 31.00	-1	999428..999727	-	99	190571324	-	WP0929	-	oxidoreductase, putative
847	 34.64	0	999870..1000481	+	203	190571325	-	WP0930	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
848	 31.91	0	1000481..1001044	+	187	190571326	pth	WP0931	-	peptidyl-tRNA hydrolase
849	 35.77	0	1001079..1002146	-	355	190571327	recA	WP0932	-	recA protein
850	 37.40	+1	1002261..1002998	+	245	190571328	truA	WP0933	-	tRNA pseudouridine synthase A
851	 34.11	0	1003000..1004151	-	383	190571329	dnaN	WP0934	-	DNA polymerase III, beta subunit
852	 33.94	0	1004263..1004760	-	165	190571330	-	WP0935	-	hypothetical protein
853	 33.45	0	1004753..1005646	-	297	190571331	rpoH	WP0936	-	heat shock sigma factor RpoH
854	 37.85	+1	1005930..1006616	-	228	190571332	-	WP0937	-	surface antigen Wsp
855	 35.14	0	1006953..1007285	-	110	190571333	-	WP0938	-	hypothetical protein
856	 33.33	0	1007289..1008872	-	527	190571334	dnaX	WP0939	-	DNA polymerase III, gamma and tau subunits
857	 34.91	0	1009046..1009426	+	126	190571335	-	WP0940	-	hypothetical protein
858	 33.03	0	1009423..1010076	+	217	190571336	-	WP0941	-	glutathione S-transferase family protein
859	 30.38	-1	1010048..1010725	-	225	190571337	-	WP0942	-	O-methyltransferase family protein
860	 31.54	0	1010977..1011255	+	92	190571338	-	WP0943	-	hypothetical protein
861	 28.83	-1	1011284..1012015	-	243	190571339	-	WP0944	-	hypothetical protein
862	 31.60	0	1012030..1012491	-	153	190571340	-	WP0945	-	hypothetical protein
863	 31.45	-1	1012788..1013372	+	194	190571341	-	WP0946	-	hypothetical protein
864	 37.22	+1	1013369..1014679	+	436	190571342	folC	WP0947	-	folylpolyglutamate synthase
865	 34.63	0	1014685..1015071	-	128	190571343	-	WP0948	-	hypothetical protein
866	 34.18	0	1015423..1015896	-	157	190571344	-	WP0949	-	hypothetical protein
867	 36.55	0	1016103..1017533	+	476	190571345	tldD	WP0950	-	tldD protein
868	 35.51	0	1018295..1019167	-	290	190571346	-	WP0951	-	transposase
869	 38.00	+1	1019495..1020094	-	199	190571347	petA	WP0952	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
870	 37.62	+1	1020189..1022891	-	900	190571348	gyrA	WP0953	-	DNA gyrase, A subunit
871	 31.72	0	1023080..1023946	-	288	190571349	-	WP0954	-	TPR domain protein
872	 32.83	0	1024015..1024413	-	132	190571350	-	WP0955	-	hypothetical protein
873	 35.80	0	1024410..1024937	-	175	190571351	-	WP0956	-	bioY family protein
874	 37.70	+1	1025034..1025606	+	190	190571352	-	WP0957	-	nitroreductase family protein
875	 34.14	0	1025582..1026694	-	370	190571353	-	WP0958	-	glycosyl hydrolase, family 5 protein
876	 35.35	0	1026800..1027594	+	264	190571354	dapF	WP0959	-	diaminopimelate epimerase
877	 41.50	+2	1027601..1028482	-	293	190571355	sucD	WP0960	-	succinyl-CoA synthetase, alpha subunit
878	 35.23	0	1028486..1029646	-	386	190571356	sucC	WP0961	-	succinyl-CoA synthase, beta subunit
879	 35.32	0	1029677..1029877	-	66	190571357	rpsU	WP0962	-	ribosomal protein S21, putative
880	 34.48	0	1030272..1030967	-	231	190571358	-	WP0963	-	hypothetical protein
881	 36.61	0	1032356..1033180	-	274	190571359	-	WP0965	-	coproporphyrinogen III oxidase
882	 31.84	0	1033340..1035820	+	826	190571360	-	WP0966	-	membrane associated signal transduction histidine kinase and receiver domain
883	 36.42	0	1035907..1036749	+	280	190571361	-	WP0967	-	Chromosome partitioning protein,ParA family
884	 35.87	0	1036746..1037612	+	288	190571362	-	WP0968	-	Chromosome partitioning protein, ParB family
885	 34.25	0	1037697..1038902	-	401	190571363	-	WP0969	-	ispD/ispF bifunctional enzyme
886	 31.77	0	1039253..1039891	+	212	190571364	-	WP0970	-	hypothetical protein
887	 39.66	+1	1040903..1042246	+	447	190571365	-	WP0972	-	Putative reverse transcriptase
888	 42.79	+2	1043043..1043243	+	66	190571366	-	WP0973	-	hypothetical protein
889	 42.65	+2	1043404..1043682	+	92	190571367	-	WP0974	-	hypothetical protein
34.35	MEAN

2.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.