IslandPathversion 1.0

IslandPath Analysis: Wolbachia pipientis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.35 STD DEV: 2.87
Wolbachia pipientis, complete genome - 1..1482455
1275 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
495	 28.91	-1	604835..605671	-	278	190570973	-	WP0559	-	transcription antiterminator
496	 25.71	-2	605661..605870	-	69	190570974	secE	WP0560	-	protein translocase subunit secE
497	 40.75	+2	605966..607138	-	390	190570975	tuf	WP0561	-	translation elongation factor Tu
498	 35.84	0	607151..609226	-	691	190570976	fusA	WP0562	-	translation elongation factor G
499	 35.64	0	609248..609724	-	158	190570977	rpsG	WP0563	-	ribosomal protein S7
500	 41.33	+2	609730..610104	-	124	190570978	rpsL	WP0564	-	ribosomal protein S12
501	 33.92	0	610547..611398	+	283	190570979	-	WP0565	-	modification methylase, HemK family
502	 34.00	0	612115..612714	-	199	190570980	-	WP0568	-	Putative lipoprotein
503	 31.03	-1	613208..614551	+	447	190570981	-	WP0569	-	trigger factor, putative
504	 34.93	0	614564..615190	+	208	190570982	clpP	WP0570	-	ATP-dependent Clp protease, proteolytic subunit ClpP
505	 36.15	0	615190..616467	+	425	190570983	clpX	WP0571	-	ATP-dependent Clp protease, ATP-binding subunit ClpX
506	 34.84	0	616483..618939	+	818	190570984	lon	WP0572	-	ATP-dependent protease La
507	 35.39	0	619039..620595	-	518	190570985	-	WP0573	-	penicillin-binding protein
508	 32.68	0	620616..621386	-	256	190570986	-	WP0574	-	polysaccharide deacetylase, putative
509	 38.69	+1	621507..623018	+	503	190570987	-	WP0575	-	Mg chelatase-related protein
510	 37.87	+1	623090..623596	+	168	190570988	-	WP0576	-	hypothetical protein
511	 38.57	+1	623830..625014	+	394	190570989	ftsZ	WP0577	-	cell division protein FtsZ
512	 32.58	0	625014..625412	+	132	190570990	-	WP0578	-	hypothetical protein
513	 32.03	0	625406..625864	+	152	190570991	-	WP0579	-	conserved hypothetical protein TIGR00043
514	 33.84	0	625919..626707	+	262	190570992	sdhB	WP0580	-	succinate dehydrogenase, iron-sulfur protein
515	 27.53	-2	626711..627847	-	378	190570993	-	WP0581	-	hypothetical protein
516	 31.57	0	627883..628674	-	263	190570994	-	WP0582	-	acetyltransferase, GNAT family
517	 31.68	0	628664..629146	-	160	190570995	-	WP0583	-	phosphatidylglycerophosphatase A, putative
518	 33.84	0	629166..630143	-	325	190570996	gpsA	WP0584	-	glycerol-3-phosphate dehydrogenase (NAD+)
519	 36.84	0	630467..631237	+	256	190570997	-	WP0585	-	two component transcriptional regulator
520	 36.33	0	635537..636037	+	166	190570998	nuoE	WP0588	-	NADH dehydrogenase I, E subunit
521	 37.38	+1	636038..637249	+	403	190570999	tgt	WP0589	-	queuine tRNA-ribosyltransferase
522	 34.59	0	637666..638940	-	424	190571000	-	WP0591	-	peptidase, M16 family
523	 32.18	0	638942..639550	-	202	190571001	sodB	WP0592	-	superoxide dismutase, Fe
524	 36.35	0	639685..640215	+	176	190571002	-	WP0593	-	hypothetical protein
525	 35.51	0	640649..641521	+	290	190571003	-	WP0595	-	transposase
526	 35.51	0	641671..642543	+	290	190571004	-	WP0596	-	transposase
527	 34.61	0	642684..643232	-	182	190571005	-	WP0597	-	Putative methyltransferase
528	 33.02	0	643337..643966	-	209	190571006	-	WP0598	-	hypothetical protein
529	 35.05	0	643950..647204	-	1084	190571007	-	WP0599	-	TrlB/VirB6 plasmid conjugal transfer domain protein
530	 33.44	0	647286..650186	-	966	190571008	-	WP0600	-	TrbL/VirB6 plasmid conjugal transfer family protein
531	 33.75	0	650183..652555	-	790	190571009	-	WP0601	-	TrbL/VirB6 plasmid conjugal transfer family protein
532	 36.59	0	652573..655149	-	858	190571010	-	WP0602	-	type IV secretion system protein VirB6
533	 33.87	0	655142..657547	-	801	190571011	-	WP0603	-	type IV secretion system protein VirB4
534	 33.00	0	657557..657853	-	98	190571012	-	WP0604	-	type IV secretion system protein VirB3, putative
535	 36.12	0	657918..659495	+	525	190571013	lysS	WP0605	-	lysyl-tRNA synthetase
536	 31.68	0	660084..660809	-	241	190571014	-	WP0606	-	ankyrin repeat domain protein
537	 33.51	0	660985..661563	-	192	190571015	-	WP0607	-	ribosomal RNA large subunit methyltransferase J, putative
538	 30.81	-1	661639..662154	-	171	190571016	-	WP0608	-	hypothetical protein
539	 32.77	0	662165..663400	-	411	190571017	-	WP0609	-	putative outer membrane protein
540	 33.99	0	663532..663990	+	152	190571018	rplM	WP0610	-	ribosomal protein L13
541	 35.62	0	664002..664439	+	145	190571019	rpsI	WP0611	-	ribosomal protein S9
542	 30.77	-1	664574..664885	+	103	190571020	-	WP0612	-	DNA-binding protein, HU family
543	 35.17	0	664878..665585	-	235	190571021	pdxJ	WP0613	-	pyridoxal phosphate biosynthetic protein PdxJ
544	 33.11	0	665957..666412	+	151	190571022	-	WP0614	-	heat shock protein, Hsp20 family
545	 37.10	0	667260..668612	-	450	190571023	gltX	WP0615	-	glutamyl-tRNA synthetase
546	 34.10	0	668764..669414	+	216	190571024	-	WP0616	-	hypothetical protein
547	 36.07	0	669476..671446	+	656	190571025	pccA	WP0617	-	propionyl-CoA carboxylase, alpha subunit
548	 34.14	0	671429..672424	-	331	190571026	-	WP0618	-	cytochrome c oxidase assembly protein
549	 31.13	-1	672406..673995	-	529	190571027	-	WP0619	-	glycosyl transferase, group 2 family protein
550	 31.24	-1	674001..674477	-	158	190571028	-	WP0620	-	hypothetical protein
551	 30.00	-1	674485..674964	-	159	190571029	-	WP0621	-	ATP synthase F0, B subunit
552	 36.40	0	674968..675195	-	75	190571030	atpE	WP0622	-	ATP synthase F0, C subunit
553	 31.13	-1	675255..675980	-	241	190571031	atpB	WP0623	-	ATP synthase F0, A subunit
554	 33.33	0	676197..676466	+	89	190571032	-	WP0624	-	hypothetical protein
555	 34.79	0	676579..678918	+	779	190571033	pheT	WP0625	-	phenylalanyl-tRNA synthetase, beta subunit
556	 37.59	+1	681762..684932	-	1056	190571034	ileS	WP0627	-	isoleucyl-trna synthetase
557	 28.51	-2	685017..685265	+	82	190571035	-	WP0628	-	hypothetical protein
558	 37.94	+1	685368..686690	-	440	190571036	-	WP0629	-	trna-i(6)a37 thiotransferase enzyme
559	 37.01	0	687357..689096	+	579	190571037	recJ	WP0630	-	single-stranded-DNA-specific exonuclease RecJ
560	 40.32	+2	689115..690287	-	390	190571038	nuoD	WP0631	-	NADH dehydrogenase I, D subunit
561	 32.18	0	690553..691074	+	173	190571039	-	WP0632	-	cytochrome b561
562	 38.65	+1	691080..692075	+	331	190571040	fabK	WP0633	-	enoyl-(acyl-carrier-protein) reductase II
563	 34.90	0	692208..693671	+	487	190571041	-	WP0634	-	hypothetical protein
564	 32.51	0	693776..694141	+	121	190571042	-	WP0635	-	Putative lipoprotein
565	 31.63	0	694193..696547	+	784	190571043	-	WP0636	-	type IV secretion system protein VirB4
566	 34.20	0	696528..699416	+	962	190571044	-	WP0637	-	hypothetical protein
567	 35.29	0	699661..700734	-	357	190571045	-	WP0638	-	ankyrin repeat domain protein
568	 36.15	0	700826..701605	-	259	190571046	-	WP0639	-	hypothetical protein
569	 36.12	0	701611..702255	-	214	190571047	-	WP0640	-	phospholipase/carboxylesterase family protein
570	 37.98	+1	702353..702718	-	121	190571048	-	WP0641	-	hypothetical protein
571	 34.39	0	702813..704609	-	598	190571049	-	WP0642	-	aminopeptidase P
572	 38.60	+1	704611..706659	-	682	190571050	gidA	WP0643	-	glucose-inhibited division protein A
573	 37.29	+1	706749..707279	-	176	190571051	-	WP0644	-	hypothetical protein
574	 31.40	-1	707647..709143	+	498	190571052	mviN	WP0645	-	integral membrane protein MviN
575	 38.38	+1	709166..709522	+	118	190571053	-	WP0646	-	hypothetical protein
576	 30.28	-1	709519..712008	+	829	190571054	-	WP0647	-	hypothetical protein
577	 34.43	0	712244..712789	-	181	190571055	-	WP0648	-	ankyrin repeat domain protein
578	 39.46	+1	712843..714018	-	391	190571056	-	WP0649	-	phage portal protein, HK97 family
579	 33.66	0	714330..714947	+	205	190571057	lipB	WP0650	-	lipoate-protein ligase B
580	 32.81	0	714947..715906	+	319	190571058	-	WP0651	-	Peptidase S66 family protein
581	 36.81	0	716095..716958	-	287	190571059	-	WP0652	-	ankyrin repeat domain protein
582	 34.49	0	718699..720000	-	433	190571060	purB	WP0654	-	adenylosuccinate lyase
583	 33.15	0	720131..720685	-	184	190571061	rplI	WP0655	-	ribosomal protein L9
584	 35.87	0	720689..720964	-	91	190571062	rpsR	WP0656	-	ribosomal protein S18
585	 30.49	-1	720967..721740	-	257	190571063	rpsF	WP0657	-	30s ribosomal protein s6
586	 36.22	0	721790..725110	-	1106	190571064	dnaE	WP0658	-	DNA polymerase III, alpha subunit
587	 35.51	0	726165..727037	+	290	190571065	-	WP0660	-	transposase
588	 35.44	0	727759..728658	-	299	190571066	fmt	WP0661	-	methionyl-tRNA formyltransferase
589	 36.07	0	728678..729043	-	121	190571067	rplT	WP0662	-	ribosomal protein L20
590	 33.82	0	729065..729271	-	68	190571068	rpmI	WP0663	-	ribosomal protein L35
591	 32.88	0	729370..729813	-	147	190571069	-	WP0664	-	hypothetical protein
592	 30.67	-1	730025..730774	-	249	190571070	-	WP0665	-	hypothetical protein
593	 33.44	0	731064..732020	-	318	190571071	-	WP0666	-	hypothetical protein
594	 35.19	0	732239..734821	+	860	190571072	alaS	WP0667	-	alanyl-tRNA synthetase
34.35	MEAN

2.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.