IslandPathversion 1.0

IslandPath Analysis: Wolbachia pipientis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.35 STD DEV: 2.87
Wolbachia pipientis, complete genome - 1..1482455
1275 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
435	 30.74	-1	530053..530745	-	230	190570913	-	WP0493	-	membrane protein, TerC family
436	 34.20	0	531027..532403	+	458	190570914	-	WP0494	-	malonyl-CoA decarboxylase, putative
437	 32.06	0	532489..533511	+	340	190570915	-	WP0495	-	hypothetical protein
438	 37.34	+1	533593..535389	+	598	190570916	lepA	WP0496	-	GTP-binding protein LepA
439	 31.39	-1	535629..536501	-	290	190570917	-	WP0497	-	hypothetical protein
440	 32.35	0	536560..536967	-	135	190570918	-	WP0498	-	glutaredoxin family protein
441	 32.05	0	537036..537968	+	310	190570919	ribF	WP0499	-	riboflavin biosynthesis protein RibF
442	 30.82	-1	537965..538441	+	158	190570920	lspA	WP0500	-	lipoprotein signal peptidase
443	 33.56	0	538446..539774	+	442	190570921	-	WP0501	-	protease, insulinase family
444	 32.43	0	539761..541083	+	440	190570922	-	WP0502	-	peptidase, M16 family
445	 36.68	0	541077..541643	-	188	190570923	-	WP0503	-	phosphoribosylglycinamide formyltransferase, putative
446	 28.78	-1	541910..542326	+	138	190570924	-	WP0504	-	hypothetical protein
447	 30.27	-1	542319..542840	-	173	190570925	-	WP0505	-	Na+/H+ ion antiporter family protein
448	 37.17	0	542944..543855	+	303	190570926	-	WP0506	-	ankyrin repeat domain protein
449	 32.67	0	543944..544393	+	149	190570927	smpB	WP0507	-	SsrA-binding protein
450	 34.97	0	544400..545191	+	263	190570928	lgt	WP0508	-	prolipoprotein diacylglyceryl transferase
451	 31.31	-1	545406..545948	-	180	190570929	-	WP0509	-	hypothetical protein
452	 35.38	0	546033..546569	-	178	190570930	-	WP0510	-	Putative endonuclease protein
453	 39.72	+1	546601..548088	-	495	190570931	-	WP0511	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
454	 33.70	0	548136..550019	-	627	190570932	-	WP0512	-	hypothetical protein
455	 30.23	-1	550359..551099	+	246	190570933	-	WP0513	-	DsbA-like disulfide oxidoreductase
456	 32.47	0	551291..552679	+	462	190570934	-	WP0514	-	hypothetical protein
457	 39.47	+1	552699..553937	-	412	190570935	-	WP0515	-	transposase
458	 34.92	0	554057..554245	+	62	190570936	-	WP0516	-	hypothetical protein
459	 35.51	0	554404..555276	-	290	190570937	-	WP0518	-	transposase
460	 32.17	0	555952..556725	-	257	190570938	-	WP0519	-	hypothetical protein
461	 38.95	+1	556920..559589	-	889	190570939	sucA	WP0520	-	2-oxoglutarate dehydrogenase, E1 component
462	 34.87	0	559982..561349	+	455	190570940	-	WP0521	-	hypothetical protein
463	 34.93	0	561357..562355	-	332	190570941	trpS	WP0522	-	tryptophanyl-tRNA synthetase
464	 34.40	0	562371..562931	-	186	190570942	grpE	WP0523	-	heat shock protein GrpE
465	 33.74	0	562993..563979	-	328	190570943	ispB	WP0524	-	octaprenyl-diphosphate synthase
466	 36.83	0	563990..564304	-	104	190570944	rpsP	WP0525	-	ribosomal protein S16
467	 30.94	-1	564439..566238	-	599	190570945	-	WP0526	-	peptidyl-prolyl cis-trans isomerse D, putative
468	 31.52	0	567245..567850	+	201	190570946	-	WP0528	-	hypothetical protein
469	 36.53	0	568045..569451	+	468	190570947	rho	WP0529	-	transcription termination factor Rho
470	 38.04	+1	569717..571204	-	495	190570948	guaB	WP0530	-	inosine-5'-monophosphate dehydrogenase
471	 33.46	0	571328..572122	-	264	190570949	ksgA	WP0531	-	dimethyladenosine transferase
472	 32.34	0	572297..572998	+	233	190570950	tpiA	WP0532	-	triosephosphate isomerase
473	 34.88	0	573149..574504	+	451	190570951	murD	WP0533	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
474	 31.98	0	574523..575113	+	196	190570952	-	WP0534	-	hypothetical protein
475	 35.51	0	575514..576386	-	290	190570953	-	WP0535	-	transposase
476	 36.07	0	576483..576665	-	60	190570954	-	WP0536	-	hypothetical protein
477	 33.68	0	578035..578325	+	96	190570955	-	WP0538	-	hypothetical protein
478	 31.14	-1	578322..578867	-	181	190570956	-	WP0539	-	hypothetical protein
479	 30.65	-1	578951..579286	-	111	190570957	cutA	WP0540	-	periplasmic divalent cation tolerance protein
480	 33.73	0	580764..582284	+	506	190570958	purH	WP0542	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
481	 32.56	0	582761..583018	+	85	190570959	-	WP0543	-	transposase, (fragment)
482	 35.68	0	583788..584426	-	212	190570960	nth	WP0545	-	endonuclease III
483	 33.18	0	584448..585749	-	433	190570961	-	WP0546	-	Putative dnaj domain membrane protein
484	 36.93	0	585832..587250	-	472	190570962	-	WP0547	-	isocitrate dehydrogenase, NAD-dependent
485	 35.51	0	587718..588590	-	290	190570963	-	WP0549	-	transposase
486	 36.40	0	589072..590343	-	423	190570964	purD	WP0550	-	phosphoribosylamine--glycine ligase
487	 34.74	0	590375..591655	-	426	190570965	serS	WP0551	-	seryl-tRNA synthetase
488	 32.49	0	591783..593204	+	473	190570966	-	WP0552	-	hypothetical protein
489	 38.91	+1	593212..594162	+	316	190570967	-	WP0553	-	NifR3 family protein
490	 34.65	0	594197..602716	-	2839	190570968	rpoBC	WP0554	-	DNA-directed RNA polymerase, beta/beta' subunits
491	 32.09	0	602775..603176	-	133	190570969	rplL	WP0555	-	ribosomal protein L7/L12
492	 29.87	-1	603203..603721	-	172	190570970	rplJ	WP0556	-	ribosomal protein L10
493	 33.18	0	603734..604387	-	217	190570971	rplA	WP0557	-	ribosomal protein L1
494	 38.32	+1	604392..604832	-	146	190570972	rplK	WP0558	-	ribosomal protein L11
495	 28.91	-1	604835..605671	-	278	190570973	-	WP0559	-	transcription antiterminator
496	 25.71	-2	605661..605870	-	69	190570974	secE	WP0560	-	protein translocase subunit secE
497	 40.75	+2	605966..607138	-	390	190570975	tuf	WP0561	-	translation elongation factor Tu
498	 35.84	0	607151..609226	-	691	190570976	fusA	WP0562	-	translation elongation factor G
499	 35.64	0	609248..609724	-	158	190570977	rpsG	WP0563	-	ribosomal protein S7
500	 41.33	+2	609730..610104	-	124	190570978	rpsL	WP0564	-	ribosomal protein S12
501	 33.92	0	610547..611398	+	283	190570979	-	WP0565	-	modification methylase, HemK family
502	 34.00	0	612115..612714	-	199	190570980	-	WP0568	-	Putative lipoprotein
503	 31.03	-1	613208..614551	+	447	190570981	-	WP0569	-	trigger factor, putative
504	 34.93	0	614564..615190	+	208	190570982	clpP	WP0570	-	ATP-dependent Clp protease, proteolytic subunit ClpP
505	 36.15	0	615190..616467	+	425	190570983	clpX	WP0571	-	ATP-dependent Clp protease, ATP-binding subunit ClpX
506	 34.84	0	616483..618939	+	818	190570984	lon	WP0572	-	ATP-dependent protease La
507	 35.39	0	619039..620595	-	518	190570985	-	WP0573	-	penicillin-binding protein
508	 32.68	0	620616..621386	-	256	190570986	-	WP0574	-	polysaccharide deacetylase, putative
509	 38.69	+1	621507..623018	+	503	190570987	-	WP0575	-	Mg chelatase-related protein
510	 37.87	+1	623090..623596	+	168	190570988	-	WP0576	-	hypothetical protein
511	 38.57	+1	623830..625014	+	394	190570989	ftsZ	WP0577	-	cell division protein FtsZ
512	 32.58	0	625014..625412	+	132	190570990	-	WP0578	-	hypothetical protein
513	 32.03	0	625406..625864	+	152	190570991	-	WP0579	-	conserved hypothetical protein TIGR00043
514	 33.84	0	625919..626707	+	262	190570992	sdhB	WP0580	-	succinate dehydrogenase, iron-sulfur protein
515	 27.53	-2	626711..627847	-	378	190570993	-	WP0581	-	hypothetical protein
516	 31.57	0	627883..628674	-	263	190570994	-	WP0582	-	acetyltransferase, GNAT family
517	 31.68	0	628664..629146	-	160	190570995	-	WP0583	-	phosphatidylglycerophosphatase A, putative
518	 33.84	0	629166..630143	-	325	190570996	gpsA	WP0584	-	glycerol-3-phosphate dehydrogenase (NAD+)
519	 36.84	0	630467..631237	+	256	190570997	-	WP0585	-	two component transcriptional regulator
520	 36.33	0	635537..636037	+	166	190570998	nuoE	WP0588	-	NADH dehydrogenase I, E subunit
521	 37.38	+1	636038..637249	+	403	190570999	tgt	WP0589	-	queuine tRNA-ribosyltransferase
522	 34.59	0	637666..638940	-	424	190571000	-	WP0591	-	peptidase, M16 family
523	 32.18	0	638942..639550	-	202	190571001	sodB	WP0592	-	superoxide dismutase, Fe
524	 36.35	0	639685..640215	+	176	190571002	-	WP0593	-	hypothetical protein
525	 35.51	0	640649..641521	+	290	190571003	-	WP0595	-	transposase
526	 35.51	0	641671..642543	+	290	190571004	-	WP0596	-	transposase
527	 34.61	0	642684..643232	-	182	190571005	-	WP0597	-	Putative methyltransferase
528	 33.02	0	643337..643966	-	209	190571006	-	WP0598	-	hypothetical protein
529	 35.05	0	643950..647204	-	1084	190571007	-	WP0599	-	TrlB/VirB6 plasmid conjugal transfer domain protein
530	 33.44	0	647286..650186	-	966	190571008	-	WP0600	-	TrbL/VirB6 plasmid conjugal transfer family protein
531	 33.75	0	650183..652555	-	790	190571009	-	WP0601	-	TrbL/VirB6 plasmid conjugal transfer family protein
532	 36.59	0	652573..655149	-	858	190571010	-	WP0602	-	type IV secretion system protein VirB6
533	 33.87	0	655142..657547	-	801	190571011	-	WP0603	-	type IV secretion system protein VirB4
534	 33.00	0	657557..657853	-	98	190571012	-	WP0604	-	type IV secretion system protein VirB3, putative
34.35	MEAN

2.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.