IslandPathversion 1.0

IslandPath Analysis: Wolbachia pipientis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.35 STD DEV: 2.87
Wolbachia pipientis, complete genome - 1..1482455
1275 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
354	 32.27	0	431883..439745	-	2620	190570832	-	WP0407	-	ankyrin and tpr repeat domain protein
355	 28.76	-1	440137..440289	-	50	190570833	-	WP0408	-	hypothetical protein
356	 30.52	-1	440431..441426	+	331	190570834	-	WP0409	-	putative RDD domain transmembrane protein
357	 37.60	+1	441672..444392	+	906	190570835	-	WP0410	-	ankyrin repeat domain protein
358	 34.14	0	444716..446203	-	495	190570836	-	WP0411	-	site-specific recombinase, resolvase family
359	 37.96	+1	446213..446644	-	143	190570837	-	WP0412	-	Putative phage related protein
360	 37.56	+1	446649..447098	-	149	190570838	-	WP0413	-	Ankyrin repeat domain protein
361	 36.71	0	447124..447834	-	236	190570839	-	WP0414	-	ankyrin repeat domain protein
362	 34.19	0	448002..449162	-	386	190570840	-	WP0415	-	Putative phage related protein
363	 34.86	0	449162..449947	-	261	190570841	-	WP0416	-	baseplate assembly protein GpJ
364	 33.63	0	449950..450285	-	111	190570842	-	WP0417	-	baseplate assembly protein GpW
365	 34.12	0	450288..450542	-	84	190570843	-	WP0418	-	Putative phage related protein
366	 34.19	0	450539..451003	-	154	190570844	-	WP0419	-	baseplate assembly protein GpV
367	 35.65	0	450990..451463	-	157	190570845	-	WP0420	-	putative phage related protein
368	 33.74	0	451460..451951	-	163	190570846	-	WP0421	-	Putative minor tail protein Z
369	 36.63	0	451953..452255	-	100	190570847	-	WP0422	-	putative phage related protein
370	 33.59	0	452262..452657	-	131	190570848	-	WP0423	-	glyoxalase/bleomycin resistance protein/dioxygenase domain protein
371	 39.42	+1	452710..453711	-	333	190570849	-	WP0424	-	putative phage related protein
372	 39.25	+1	453737..454108	-	123	190570850	-	WP0425	-	putative phage related protein
373	 35.78	0	454183..455244	-	353	190570851	-	WP0426	-	putative minor capsid protein c
374	 38.98	+1	455259..456479	-	406	190570852	-	WP0427	-	Putative phage portal protein
375	 33.94	0	456648..458621	-	657	190570853	-	WP0428	-	hypothetical protein
376	 37.43	+1	458665..459885	-	406	190570854	-	WP0429	-	Phage related DNA methylase
377	 36.99	0	459999..460463	-	154	190570855	-	WP0430	-	putative phage related protein
378	 34.31	0	460932..461951	+	339	190570856	-	WP0431	-	Putative virulence factor RhuM protein
379	 35.51	0	463624..464496	-	290	190570857	-	WP0432	-	transposase
380	 36.59	0	465011..467068	+	685	190570858	-	WP0433	-	putative phage related protein
381	 34.53	0	467103..467603	+	166	190570859	-	WP0434	-	RNA polymerase sigma-70 domain protein
382	 39.75	+1	467621..468430	+	269	190570860	-	WP0435	-	Putative phage related protein
383	 36.68	0	468465..469271	+	268	190570861	-	WP0436	-	Putative phage related protein
384	 35.32	0	469306..469809	+	167	190570862	-	WP0437	-	Putative phage related protein
385	 38.45	+1	470102..470785	+	227	190570863	-	WP0438	-	putative phage related protein
386	 34.81	0	471885..472832	-	315	190570864	-	WP0440	-	transposase
387	 37.05	0	474100..475284	+	394	190570865	-	WP0441	-	Putative phage related protein
388	 30.77	-1	475289..475483	+	64	190570866	-	WP0442	-	Putative phage related protein
389	 35.44	0	475480..476853	+	457	190570867	-	WP0443	-	Putative phage related protein
390	 32.61	0	476876..477427	+	183	190570868	-	WP0444	-	Putative phage related protein
391	 37.32	+1	477420..478598	+	392	190570869	-	WP0445	-	Phage major tail sheath protein
392	 36.29	0	478614..479120	+	168	190570870	-	WP0446	-	Phage tail tube protein
393	 35.29	0	479157..479411	+	84	190570871	-	WP0447	-	putative phage related protein
394	 35.01	0	479527..481791	+	754	190570872	-	WP0448	-	Phage tail tape measure protein
395	 31.65	0	481791..482147	+	118	190570873	-	WP0449	-	phage tail protein GpU
396	 33.33	0	482144..482353	+	69	190570874	-	WP0450	-	Phage tail protein GpX
397	 33.97	0	482354..483289	+	311	190570875	-	WP0451	-	phage late control gene d protein GpD
398	 32.02	0	483337..483870	+	177	190570876	-	WP0452	-	ankyrin repeat domain protein
399	 36.11	0	483918..484133	+	71	190570877	-	WP0453	-	hypothetical protein
400	 33.89	0	484125..484667	-	180	190570878	-	WP0454	-	Putative endonuclease protein
401	 34.20	0	484654..485577	+	307	190570879	-	WP0455	-	patatin family protein
402	 32.13	0	485656..485988	-	110	190570880	-	WP0456	-	hypothetical protein
403	 33.13	0	486388..487365	-	325	190570881	-	WP0457	-	Putative transcriptional regulator
404	 35.10	0	487429..488670	-	413	190570882	-	WP0458	-	hypothetical protein
405	 37.52	+1	488966..489634	-	222	190570883	-	WP0459	-	Putative dna repair protein radc
406	 34.21	0	490838..491749	+	303	190570884	-	WP0461	-	hypothetical protein
407	 32.82	0	491755..499743	-	2662	190570885	-	WP0462	-	ankyrin repeat domain protein
408	 29.55	-1	499843..500106	-	87	190570886	-	WP0463	-	hypothetical protein
409	 29.68	-1	500899..501309	+	136	190570887	-	WP0464	-	putative acetyltransferase
410	 28.27	-2	501322..502566	+	414	190570888	-	WP0465	-	Major facilitator superfamily protein
411	 34.46	0	502720..504675	-	651	190570889	ligA	WP0466	-	DNA ligase, NAD-dependent
412	 31.33	-1	504830..505129	+	99	190570890	-	WP0467	-	hypothetical protein
413	 34.52	0	507483..508073	-	196	190570891	pyrE	WP0470	-	orotate phosphoribosyltransferase
414	 33.42	0	508070..509254	-	394	190570892	-	WP0471	-	sodium/glutamate symporter family protein, putative
415	 33.97	0	509373..509846	+	157	190570893	-	WP0472	-	hypothetical protein
416	 36.16	0	509929..510813	-	294	190570894	murB	WP0473	-	UDP-N-acetylenolpyruvoylglucosamine reductase
417	 36.29	0	510804..511682	-	292	190570895	hemC	WP0474	-	porphobilinogen deaminase
418	 32.27	0	511802..512176	+	124	190570896	-	WP0475	-	hypothetical protein
419	 33.73	0	512249..513763	+	504	190570897	secD	WP0476	-	protein-export membrane protein SecD
420	 31.91	0	514043..514957	-	304	190570898	-	WP0477	-	surface antigen-related protein
421	 32.68	0	515017..516243	-	408	190570899	-	WP0478	-	MiaB-like tRNA modifying enzyme
422	 33.69	0	516463..517017	-	184	190570900	-	WP0479	-	hypothetical protein
423	 36.95	0	517381..517629	+	82	190570901	-	WP0480	-	hypothetical protein
424	 32.97	0	518005..518838	-	277	190570902	-	WP0481	-	hypothetical protein
425	 35.66	0	518987..521008	+	673	190570903	recG	WP0482	-	ATP-dependent DNA helicase RecG
426	 34.92	0	521338..521526	+	62	190570904	-	WP0484	-	hypothetical protein
427	 33.33	0	521739..521867	-	42	190570905	-	WP0485	-	ribosomal protein L36
428	 31.87	0	521929..522747	-	272	190570906	-	WP0486	-	hypothetical protein
429	 37.27	+1	522890..523600	+	236	190570907	ccmC	WP0487	-	heme exporter protein CcmC
430	 35.51	0	523850..524722	+	290	190570908	-	WP0488	-	transposase
431	 32.95	0	524971..526011	+	346	190570909	-	WP0489	-	hypothetical protein
432	 31.41	-1	526020..526175	+	51	190570910	-	WP0490	-	hypothetical protein
433	 31.97	0	526576..528042	+	488	190570911	-	WP0491	-	type II secretion system protein, putative
434	 35.70	0	528270..529832	+	520	190570912	guaA	WP0492	-	GMP synthase
435	 30.74	-1	530053..530745	-	230	190570913	-	WP0493	-	membrane protein, TerC family
436	 34.20	0	531027..532403	+	458	190570914	-	WP0494	-	malonyl-CoA decarboxylase, putative
437	 32.06	0	532489..533511	+	340	190570915	-	WP0495	-	hypothetical protein
438	 37.34	+1	533593..535389	+	598	190570916	lepA	WP0496	-	GTP-binding protein LepA
439	 31.39	-1	535629..536501	-	290	190570917	-	WP0497	-	hypothetical protein
440	 32.35	0	536560..536967	-	135	190570918	-	WP0498	-	glutaredoxin family protein
441	 32.05	0	537036..537968	+	310	190570919	ribF	WP0499	-	riboflavin biosynthesis protein RibF
442	 30.82	-1	537965..538441	+	158	190570920	lspA	WP0500	-	lipoprotein signal peptidase
443	 33.56	0	538446..539774	+	442	190570921	-	WP0501	-	protease, insulinase family
444	 32.43	0	539761..541083	+	440	190570922	-	WP0502	-	peptidase, M16 family
445	 36.68	0	541077..541643	-	188	190570923	-	WP0503	-	phosphoribosylglycinamide formyltransferase, putative
446	 28.78	-1	541910..542326	+	138	190570924	-	WP0504	-	hypothetical protein
447	 30.27	-1	542319..542840	-	173	190570925	-	WP0505	-	Na+/H+ ion antiporter family protein
448	 37.17	0	542944..543855	+	303	190570926	-	WP0506	-	ankyrin repeat domain protein
449	 32.67	0	543944..544393	+	149	190570927	smpB	WP0507	-	SsrA-binding protein
450	 34.97	0	544400..545191	+	263	190570928	lgt	WP0508	-	prolipoprotein diacylglyceryl transferase
451	 31.31	-1	545406..545948	-	180	190570929	-	WP0509	-	hypothetical protein
452	 35.38	0	546033..546569	-	178	190570930	-	WP0510	-	Putative endonuclease protein
453	 39.72	+1	546601..548088	-	495	190570931	-	WP0511	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
34.35	MEAN

2.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.