IslandPath Analysis: Wolbachia pipientis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.35   STD DEV: 2.87
Wolbachia pipientis, complete genome - 1..1482455
1275 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
248	 36.52	0	283821..284354	-	177	190570726	rnhA	WP0279	-	ribonuclease h
249	 39.66	+1	284961..286304	-	447	190570727	-	WP0280	-	putative reverse transcriptase
250	 35.91	0	287774..289249	+	491	190570728	-	WP0282	-	hypothetical protein
251	 36.17	0	289303..292827	+	1174	190570729	-	WP0283	-	hypothetical protein
252	 32.76	0	293401..293919	+	172	190570730	-	WP0284	-	Putative transposase
253	 34.31	0	293993..294403	+	136	190570731	-	WP0285	-	Putative transposase (fragment)
254	 33.33	0	294562..294741	+	59	190570732	-	WP0286	-	transposase (fragment)
255	 35.86	0	296912..297466	-	184	190570733	-	WP0290	-	Putative transcriptional regulator
256	 33.87	0	297580..298512	+	310	190570734	-	WP0291	-	hypothetical protein
257	 33.14	0	298496..306742	-	2748	190570735	-	WP0292	-	Ankyrin repeat domain protein
258	 32.06	0	306739..312651	-	1970	190570736	-	WP0293	-	Ankyrin repeat domain protein
259	 31.17	-1	313400..314737	+	445	190570737	-	WP0294	-	hypothetical protein
260	 32.15	0	314745..316943	+	732	190570738	-	WP0295	-	hypothetical protein
261	 33.23	0	317593..319539	+	648	190570739	-	WP0296	-	Ankyrin repeat domain protein
262	 34.35	0	320006..321487	-	493	190570740	-	WP0297	-	site-specific recombinase, resolvase family
263	 37.96	+1	321497..321928	-	143	190570741	-	WP0298	-	Putative phage related protein
264	 37.56	+1	321933..322382	-	149	190570742	-	WP0299	-	Ankyrin repeat domain protein
265	 36.71	0	322408..323118	-	236	190570743	-	WP0300	-	ankyrin repeat domain protein
266	 34.19	0	323286..324446	-	386	190570744	-	WP0301	-	Putative phage related protein
267	 34.86	0	324446..325231	-	261	190570745	-	WP0302	-	baseplate assembly protein GpJ
268	 33.63	0	325234..325569	-	111	190570746	-	WP0303	-	baseplate assembly protein GpW
269	 34.12	0	325572..325826	-	84	190570747	-	WP0304	-	Putative phage related protein
270	 34.19	0	325823..326287	-	154	190570748	-	WP0305	-	baseplate assembly protein GpV
271	 35.65	0	326274..326747	-	157	190570749	-	WP0306	-	Putative phage related protein
272	 35.14	0	326744..327241	-	165	190570750	-	WP0307	-	Putative minor tail protein z
273	 34.27	0	327231..327551	-	106	190570751	-	WP0308	-	Putative phage related protein
274	 38.81	+1	327551..328555	-	334	190570752	-	WP0309	-	PUtative phage related protein
275	 38.71	+1	328581..328952	-	123	190570753	-	WP0310	-	Putative phage related protein
276	 34.38	0	329094..330140	-	348	190570754	-	WP0311	-	Putative minor capsid protein c
277	 38.90	+1	330140..331558	-	472	190570755	-	WP0312	-	Putative phage portal protein
278	 34.22	0	331559..331783	-	74	190570756	-	WP0313	-	Putative phage related protein
279	 39.81	+1	331773..333608	-	611	190570757	-	WP0314	-	Phage terminase large subunit GpA
280	 34.01	0	333608..335080	-	490	190570758	-	WP0315	-	Ankyrin repeat domain protein
281	 34.80	0	335088..335564	-	158	190570759	-	WP0316	-	Putative phage related protein
282	 37.39	+1	335561..336793	-	410	190570760	-	WP0317	-	Phage related DNA methylase
283	 36.77	0	336907..337371	-	154	190570761	-	WP0318	-	Putative phage related protein
284	 34.12	0	338019..341555	+	1178	190570762	-	WP0319	-	helicase, SNF2 family
285	 32.12	0	345022..345516	+	164	190570763	-	WP0321	-	RNA polymerase sigma-70 domain protein
286	 39.71	+1	345571..346056	+	161	190570764	-	WP0322	-	hypothetical protein
287	 40.09	+2	346157..347029	+	290	190570765	-	WP0323	-	Phage terminase large subunit GpA (fragment)
288	 34.22	0	347019..347243	+	74	190570766	-	WP0324	-	Putative phage related protein
289	 38.90	+1	347244..348662	+	472	190570767	-	WP0325	-	Putative phage portal protein
290	 34.38	0	348662..349708	+	348	190570768	-	WP0326	-	Putative minor capsid protein c
291	 38.71	+1	349850..350221	+	123	190570769	-	WP0327	-	Putative phage related protein
292	 39.00	+1	350247..351251	+	334	190570770	-	WP0328	-	Putative phage related protein
293	 37.91	+1	351349..351654	+	101	190570771	-	WP0329	-	Putative phage related protein
294	 33.53	0	351656..352153	+	165	190570772	-	WP0330	-	Putative minor tail protein z
295	 37.11	0	352150..352626	+	158	190570773	-	WP0331	-	Putative phage related protein
296	 33.98	0	352613..353077	+	154	190570774	-	WP0332	-	Putative baseplate assembly protein GpV
297	 37.25	+1	353077..353331	+	84	190570775	-	WP0333	-	Putative phage related protein
298	 32.74	0	353334..353669	+	111	190570776	-	WP0334	-	baseplate assembly protein GpW
299	 36.01	0	353672..354457	+	261	190570777	-	WP0335	-	baseplate assembly protein GpJ
300	 34.19	0	354457..355617	+	386	190570778	-	WP0336	-	Putative phage related protein
301	 43.73	+2	355786..356112	+	108	190570779	-	WP0337	-	hypothetical protein
302	 36.94	0	356283..357584	+	433	190570780	-	WP0338	-	reverse transcriptase
303	 37.88	+1	357596..358408	+	270	190570781	-	WP0339	-	ankyrin repeat domain protein
304	 36.71	0	358447..358920	+	157	190570782	-	WP0340	-	Ankyrin repeat domain protein
305	 37.04	0	358925..359356	+	143	190570783	-	WP0341	-	putative phage related protein
306	 35.95	0	359359..360657	+	432	190570784	-	WP0342	-	site-specific recombinase, resolvase family
307	 35.51	0	362176..363048	-	290	190570785	-	WP0344	-	transposase
308	 35.14	0	363648..366749	-	1033	190570786	-	WP0346	-	ankyrin repeat domain protein
309	 34.41	0	366743..367768	-	341	190570787	-	WP0347	-	ankyrin repeat domain protein
310	 36.08	0	368360..368905	-	181	190570788	-	WP0348	-	hypothetical protein
311	 39.26	+1	368937..369071	-	44	190570789	-	WP0349	-	hypothetical protein
312	 33.00	0	369386..371752	+	788	190570790	-	WP0350	-	hypothetical protein
313	 31.45	-1	371885..373738	+	617	190570791	-	WP0351	-	hypothetical protein
314	 33.33	0	373840..374019	+	59	190570792	-	WP0352	-	transposase (fragment)
315	 35.51	0	374116..374988	+	290	190570793	-	WP0353	-	transposase
316	 37.43	+1	375604..378165	+	853	190570794	clpB	WP0355	-	ATP-dependent Clp protease, ATP-binding subunit ClpB
317	 33.76	0	378193..382863	+	1556	190570795	gdhB	WP0356	-	nad-dependent glutamate dehydrogenase
318	 27.84	-2	382869..383159	+	96	190570796	-	WP0357	-	hypothetical protein
319	 34.28	0	383131..384507	+	458	190570797	-	WP0358	-	response regulator/GGDEF domain protein
320	 30.73	-1	384530..385258	-	242	190570798	-	WP0359	-	recO-related protein
321	 33.17	0	385392..386003	+	203	190570799	-	WP0360	-	hypothetical protein
322	 35.26	0	387504..388280	-	258	190570800	-	WP0363	-	transposase
323	 33.33	0	390751..390930	+	59	190570801	-	WP0365	-	transposase (fragment)
324	 33.81	0	391005..391427	+	140	190570802	-	WP0366	-	transposase (fragment)
325	 25.86	-2	391501..391674	-	57	190570803	-	WP0367	-	hypothetical protein
326	 35.67	0	391873..394524	+	883	190570804	secA	WP0368	-	preprotein translocase, SecA subunit
327	 35.51	0	394714..395586	-	290	190570805	-	WP0369	-	transposase
328	 41.22	+2	396604..397161	+	185	190570806	-	WP0372	-	terminase large subunit (fragment)
329	 35.51	0	397191..398063	-	290	190570807	-	WP0373	-	transposase
330	 34.59	0	398129..398605	-	158	190570808	-	WP0374	-	minor capsid protein c (fragment)
331	 35.51	0	399932..400804	+	290	190570809	-	WP0376	-	transposase
332	 33.68	0	401430..401717	-	95	190570810	-	WP0378	-	hypothetical protein
333	 33.81	0	401981..402403	-	140	190570811	-	WP0380	-	transposase (fragment)
334	 33.33	0	402478..402657	-	59	190570812	-	WP0381	-	transposase (fragment)
335	 35.75	0	402726..404009	-	427	190570813	-	WP0382	-	Na+/H+ antiporter, putative
336	 35.50	0	404202..406559	+	785	190570814	-	WP0383	-	ankyrin repeat domain protein
337	 33.66	0	406668..407591	+	307	190570815	-	WP0384	-	ribosomal large subunit pseudouridine synthase C, putative
338	 35.08	0	407599..408861	-	420	190570816	-	WP0385	-	major facilitator family transporter
339	 37.12	0	409039..409671	+	210	190570817	-	WP0386	-	glycoside hydrolase, family 25
340	 36.88	0	409770..411572	-	600	190570818	aspS	WP0387	-	aspartyl-tRNA synthetase
341	 33.99	0	411704..413080	+	458	190570819	-	WP0388	-	ankyrin repeat domain protein
342	 36.49	0	413141..415642	-	833	190570820	mutS	WP0389	-	DNA mismatch repair protein MutS
343	 33.03	0	415756..418083	+	775	190570821	-	WP0390	-	ankyrin repeat domain protein
344	 36.54	0	418134..420224	-	696	190570822	-	WP0391	-	cytochrome c-type biogenesis protein CcmF, putative
345	 31.56	0	420371..421612	+	413	190570823	-	WP0392	-	hypothetical protein
346	 35.26	0	423542..424318	-	258	190570824	-	WP0395	-	transposase
347	 34.99	0	424448..425170	+	240	190570825	-	WP0396	-	putative site-specific recombinase, resolvase family
34.35	MEAN

2.87	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.