IslandPath Analysis: Wolbachia pipientis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.35   STD DEV: 2.87
Wolbachia pipientis, complete genome - 1..1482455
1275 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.62	0	152..1534	+	460	190570479	dnaA	WP0001	-	chromosomal replication initiator protein DnaA
2	 33.90	0	1692..2567	+	291	190570480	secF	WP0002	-	protein-export membrane protein SecF
3	 32.14	0	2573..3076	-	167	190570481	-	WP0003	-	hypothetical protein
4	 31.05	-1	3211..4920	+	569	190570482	-	WP0004	-	60 kDa inner-membrane protein
5	 33.33	0	4898..5326	+	142	190570483	ribH	WP0005	-	6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta chain)
6	 30.02	-1	5326..5808	+	160	190570484	nusB	WP0006	-	N utilization substance protein B
7	 34.37	0	5908..6585	-	225	190570485	-	WP0007	-	hypothetical protein
8	 38.31	+1	6654..7115	-	153	190570486	dut	WP0008	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
9	 41.07	+2	7424..7591	+	55	190570487	-	WP0009	-	hypothetical protein
10	 33.33	0	7748..8026	+	92	190570488	-	WP0010	-	hypothetical protein
11	 31.45	-1	8129..8659	+	176	190570489	-	WP0011	-	uncharacterized phage protein
12	 31.36	-1	8942..9397	+	151	190570490	-	WP0012	-	hypothetical protein
13	 32.31	0	9372..9761	+	129	190570491	-	WP0013	-	hypothetical protein
14	 38.78	+1	9820..10554	+	244	190570492	-	WP0014	-	hypothetical protein
15	 33.60	0	10607..10981	-	124	190570493	acpS	WP0015	-	holo-(acyl-carrier-protein) synthase
16	 36.75	0	10978..12237	-	419	190570494	proS	WP0016	-	prolyl-tRNA synthetase
17	 38.75	+1	12344..13930	-	528	190570495	-	WP0017	-	hypothetical protein
18	 41.30	+2	14244..14657	+	137	190570496	-	WP0018	-	hypothetical protein
19	 33.92	0	14670..15008	-	112	190570497	-	WP0019	-	Putative lipoprotein
20	 33.94	0	15138..16127	+	329	190570498	nrdB	WP0020	-	ribonucleoside-diphosphate reductase, beta subunit
21	 26.87	-2	16935..17135	+	66	190570499	-	WP0023	-	hypothetical protein
22	 32.90	0	17620..18537	-	305	190570500	-	WP0024	-	hypothetical protein
23	 34.59	0	18600..19397	-	265	190570501	-	WP0025	-	aminomethyl transferase family protein
24	 39.18	+1	19510..19800	+	96	190570502	groES	WP0026	-	chaperonin, 10 kDa
25	 38.22	+1	19890..21548	+	552	190570503	groEL	WP0027	-	chaperonin, 60 kDa
26	 35.17	0	21750..22130	+	126	190570504	-	WP0028	-	Putative transposase
27	 35.20	0	22127..22609	+	160	190570505	-	WP0029	-	Putative transposase
28	 32.94	0	22787..23290	+	167	190570506	-	WP0030	-	hypothetical protein
29	 32.67	0	23435..24340	-	301	190570507	-	WP0031	-	hypothetical protein
30	 33.33	0	24649..24924	-	91	190570508	-	WP0032	-	hypothetical protein
31	 33.41	0	24964..26301	+	445	190570509	-	WP0033	-	sodium/alanine symporter family protein
32	 34.42	0	27764..29977	+	737	190570510	-	WP0035	-	hypothetical protein
33	 36.38	0	29964..30554	-	196	190570511	-	WP0036	-	maf-like protein
34	 34.60	0	30551..30787	-	78	190570512	infA	WP0037	-	translation initiation factor IF-1
35	 33.66	0	30859..32988	-	709	190570513	-	WP0038	-	hypothetical protein
36	 35.52	0	33147..34424	-	425	190570514	purA	WP0039	-	adenylosuccinate synthetase
37	 31.64	0	34604..36136	+	510	190570515	-	WP0040	-	hypothetical protein
38	 31.68	0	36508..37416	-	302	190570516	argB	WP0041	-	acetylglutamate kinase
39	 31.99	0	37421..38014	-	197	190570517	-	WP0042	-	GTP-binding protein
40	 35.71	0	38128..39219	+	363	190570518	prfA	WP0043	-	peptide chain release factor 1
41	 28.60	-2	39338..39781	+	147	190570519	-	WP0044	-	hypothetical protein
42	 31.08	-1	40146..41075	-	309	190570520	-	WP0045	-	hypothetical protein
43	 31.54	0	41329..41886	-	185	190570521	-	WP0046	-	hypothetical protein
44	 35.06	0	41903..43063	+	386	190570522	-	WP0047	-	drug resistance transporter
45	 35.51	0	43175..44047	-	290	190570523	-	WP0048	-	transposase
46	 35.58	0	45346..46014	+	222	190570524	-	WP0050	-	Putative rare lipoprotein A
47	 27.21	-2	47812..48219	-	135	190570525	-	WP0052	-	hypothetical protein
48	 34.28	0	48381..49538	+	385	190570526	ubiH	WP0053	-	2-polyprenyl-6-methoxyphenol hydroxylase, fad-dependent oxidoreductase
49	 35.51	0	50592..51464	-	290	190570527	-	WP0055	-	transposase
50	 30.56	-1	51838..52776	-	312	190570528	-	WP0056	-	hypothetical protein
51	 34.12	0	52984..53490	+	168	190570529	coaD	WP0057	-	phosphopantetheine adenylyltransferase
52	 34.29	0	53562..53771	+	69	190570530	-	WP0058	-	hypothetical protein
53	 32.70	0	53787..54413	-	208	190570531	cdsA	WP0059	-	phosphatidate cytidylyltransferase
54	 32.18	0	54403..55098	-	231	190570532	uppS	WP0060	-	undecaprenyl diphosphate synthase
55	 30.13	-1	55375..56592	-	405	190570533	-	WP0061	-	hypothetical protein
56	 36.83	0	56736..57908	+	390	190570534	sucB	WP0062	-	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
57	 38.80	+1	57956..58138	+	60	190570535	-	WP0063	-	hypothetical protein
58	 33.22	0	58959..59804	+	281	190570536	-	WP0065	-	hypothetical protein
59	 34.62	0	60223..60999	+	258	190570537	fabI	WP0066	-	enoyl-(acyl-carrier-protein) reductase
60	 34.10	0	62746..63924	-	392	190570538	-	WP0068	-	hypothetical protein
61	 36.71	0	64043..65137	+	364	190570539	-	WP0069	-	GTP-binding protein YchF
62	 31.40	-1	65180..66526	-	448	190570540	-	WP0070	-	hypothetical protein
63	 38.94	+1	66667..67593	-	308	190570541	glpX	WP0071	-	Frusctose-1,6-bisphosphatase, class II
64	 34.08	0	67705..69045	+	446	190570542	-	WP0072	-	hypothetical protein
65	 32.25	0	69348..70085	+	245	190570543	-	WP0073	-	ABC transporter, ATP-binding protein
66	 36.31	0	70226..70393	+	55	190570544	-	WP0074	-	Twin-arginine translocation protein
67	 34.71	0	70520..71173	+	217	190570545	-	WP0075	-	exopolysaccharide synthesis protein ExoD-like
68	 33.49	0	71288..71944	+	218	190570546	-	WP0076	-	exopolysaccharide synthesis protein ExoD-like
69	 34.19	0	71937..73331	+	464	190570547	cysS	WP0077	-	cysteinyl-tRNA synthetase
70	 33.57	0	73300..73713	+	137	190570548	-	WP0078	-	hypothetical protein
71	 30.85	-1	73744..76677	-	977	190570549	-	WP0079	-	hypothetical protein
72	 33.79	0	76670..77107	-	145	190570550	rnhA	WP0080	-	ribonuclease H
73	 34.80	0	77283..78170	-	295	190570551	ctaB	WP0081	-	protoheme IX farnesyltransferase
74	 37.91	+1	78172..79722	-	516	190570552	coxA	WP0082	-	cytochrome c oxidase, subunit I
75	 33.59	0	79738..80502	-	254	190570553	coxB	WP0083	-	cytochrome c oxidase, subunit II
76	 35.05	0	81059..82570	-	503	190570554	-	WP0084	-	secretion protein, HlyD family
77	 35.20	0	82725..83153	-	142	190570555	-	WP0085	-	hypothetical protein
78	 36.29	0	83219..84199	+	326	190570556	pdhA	WP0086	-	pyruvate dehydrogenase complex, E1 component, alpha subunit
79	 36.08	0	84405..85826	+	473	190570557	gatB	WP0087	-	glutamyl-tRNA(Gln) amidotransferase, B subunit
80	 35.51	0	89812..90684	-	290	190570558	-	WP0091	-	transposase
81	 34.42	0	91819..92739	-	306	190570559	-	WP0092	-	site-specific recombinase, phage integrase family
82	 38.33	+1	92742..94121	-	459	190570560	lpdA	WP0093	-	pyruvate dehydrogenase complex, E3 component, Dihydrolipoamide dehydrogenase
83	 32.88	0	94114..95223	-	369	190570561	-	WP0094	-	PQQ enzyme repeat family protein
84	 34.73	0	95539..96831	+	430	190570562	-	WP0095	-	hypothetical protein
85	 30.21	-1	96949..97524	-	191	190570563	-	WP0096	-	hypothetical protein
86	 37.02	0	97610..100183	+	857	190570564	valS	WP0097	-	valyl-tRNA synthetase
87	 30.73	-1	100225..102336	+	703	190570565	-	WP0098	-	hypothetical protein
88	 29.65	-1	103826..104992	+	388	190570566	-	WP0100	-	hypothetical protein
89	 38.03	+1	105036..105716	+	226	190570567	pyrF	WP0101	-	orotidine 5`-phosphate decarboxylase
90	 36.60	0	106468..107631	+	387	190570568	-	WP0102	-	phage major capsid protein, HK97 family
91	 34.90	0	107706..108407	+	233	190570569	-	WP0103	-	hypothetical protein
92	 31.97	0	108541..109344	+	267	190570570	-	WP0104	-	hypothetical protein
93	 30.89	-1	109465..111183	+	572	190570571	-	WP0105	-	hypothetical protein
94	 31.17	-1	111496..112050	+	184	190570572	-	WP0106	-	hypothetical protein
95	 35.51	0	112127..112999	+	290	190570573	-	WP0107	-	transposase
96	 37.14	0	113288..114076	+	262	190570574	dapB	WP0108	-	dihydrodipicolinate reductase
97	 34.78	0	114073..114831	+	252	190570575	pstB	WP0109	-	phosphate ABC transporter, ATP-binding protein
98	 33.78	0	114900..115121	+	73	190570576	-	WP0110	-	hypothetical protein
99	 35.51	0	115187..116059	+	290	190570577	-	WP0111	-	transposase
100	 35.56	0	116108..116782	+	224	190570578	-	WP0112	-	ankyrin repeat domain protein
34.35	MEAN

2.87	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.