IslandPathversion 1.0

IslandPath Analysis: Wolbachia pipientis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.35 STD DEV: 2.87
Wolbachia pipientis, complete genome - 1..1482455
1275 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
99	 35.51	0	115187..116059	+	290	190570577	-	WP0111	-	transposase
100	 35.56	0	116108..116782	+	224	190570578	-	WP0112	-	ankyrin repeat domain protein
101	 35.46	0	116933..118108	-	391	190570579	dxr	WP0113	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
102	 42.83	+2	118136..118630	-	164	190570580	-	WP0114	-	hypothetical protein
103	 35.51	0	120427..121299	-	290	190570581	-	WP0116	-	transposase
104	 35.38	0	121424..121618	+	64	190570582	-	WP0117	-	hypothetical protein
105	 37.58	+1	121673..123202	-	509	190570583	metG	WP0118	-	methionyl-tRNA synthetase
106	 37.05	0	123329..124243	-	304	190570584	-	WP0119	-	hypothetical protein
107	 39.39	+1	124325..125728	-	467	190570585	-	WP0120	-	probable dioxygenase
108	 35.23	0	125864..126442	+	192	190570586	coaE	WP0121	-	dephospho-coa kinase
109	 33.16	0	126432..127616	-	394	190570587	-	WP0122	-	Putative ribonuclease D
110	 38.00	+1	127701..129071	-	456	190570588	pyrC	WP0123	-	dihydroorotase
111	 34.33	0	133070..133672	-	200	190570589	-	WP0127	-	Putative membrane RDD family protein
112	 36.04	0	133880..135322	+	480	190570590	dnaB	WP0128	-	replicative DNA helicase
113	 33.06	0	135670..137157	+	495	190570591	-	WP0129	-	putative nadh-ubiquinone oxidoreductase subunit
114	 31.34	-1	137172..137822	-	216	190570592	-	WP0130	-	Putative type IV secretion system protein VirB8
115	 30.46	-1	137852..138583	-	243	190570593	-	WP0131	-	hypothetical protein
116	 31.34	-1	138683..139534	-	283	190570594	-	WP0132	-	Putative DNA polymerase III, gamma/tau subunits
117	 29.42	-1	139552..140139	-	195	190570595	-	WP0133	-	Sua5/YciO/YrdC/YwlC family protein
118	 36.52	0	140278..140748	-	156	190570596	-	WP0134	-	hypothetical protein
119	 34.00	0	140824..141717	+	297	190570597	miaA	WP0135	-	tRNA delta(2)-isopentenylpyrophosphate transferase
120	 35.51	0	142066..142938	+	290	190570598	-	WP0136	-	transposase
121	 37.75	+1	143062..144624	-	520	190570599	murE	WP0137	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
122	 36.66	0	144593..145825	-	410	190570600	metC	WP0138	-	cystathionine beta-lyase
123	 29.12	-1	145833..146117	-	94	190570601	-	WP0139	-	bolA protein, putative
124	 37.36	+1	146190..148103	-	637	190570602	dnaK	WP0140	-	chaperone protein dnak (hsp70)
125	 33.62	0	148177..149925	-	582	190570603	-	WP0141	-	ribonuclease, Rne/Rng family protein
126	 34.83	0	150075..150275	+	66	190570604	rpmG	WP0142	-	ribosomal protein L33
127	 29.91	-1	150498..150731	+	77	190570605	-	WP0143	-	hypothetical protein
128	 30.98	-1	150985..151281	+	98	190570606	-	WP0144	-	hypothetical protein
129	 31.62	0	151641..152516	-	291	190570607	-	WP0145	-	Putative cation ABC transporter, periplasmic cation-binding protein
130	 32.24	0	152508..153239	+	243	190570608	-	WP0146	-	Putative cation ABC transporter, ATP-binding protein
131	 32.77	0	153236..154657	+	473	190570609	-	WP0147	-	ubiquinone biosynthesis protein ubiB
132	 39.14	+1	157921..158868	-	315	190570610	trxB	WP0150	-	thioredoxin reductase
133	 34.33	0	158855..159454	-	199	190570611	-	WP0151	-	antioxidant, AhpC/Tsa family
134	 32.66	0	159612..160796	-	394	190570612	-	WP0152	-	hypothetical protein
135	 32.99	0	161701..162861	-	386	190570613	-	WP0154	-	hypothetical protein
136	 34.65	0	163017..163775	-	252	190570614	-	WP0155	-	sec-independent protein translocase, tatc
137	 37.76	+1	163779..164750	-	323	190570615	gap	WP0156	-	glyceraldehyde 3-phosphate dehydrogenase
138	 33.70	0	164900..165175	-	91	190570616	-	WP0157	-	hypothetical protein
139	 35.20	0	165191..165673	-	160	190570617	-	WP0158	-	Putative transposase
140	 35.17	0	165670..166050	-	126	190570618	-	WP0159	-	Putative transposase
141	 36.12	0	166422..167282	+	286	190570619	-	WP0160	-	hypothetical protein
142	 37.14	0	167650..167859	+	69	190570620	-	WP0161	-	hypothetical protein
143	 34.64	0	168035..168568	+	177	190570621	-	WP0162	-	phage prohead protease
144	 30.40	-1	168677..170923	+	748	190570622	-	WP0163	-	hypothetical protein
145	 35.29	0	170916..172142	-	408	190570623	-	WP0164	-	poly A polymerase family protein
146	 38.91	+1	172476..174305	-	609	190570624	-	WP0165	-	GTP-binding protein, typA
147	 34.38	0	174528..175862	+	444	190570625	gltX	WP0166	-	glutamyl-tRNA synthetase
148	 32.81	0	176646..177029	-	127	190570626	-	WP0168	-	Putative transposase (fragment)
149	 37.67	+1	177195..178439	-	414	190570627	-	WP0169	-	Putative reverse transcriptase
150	 32.55	0	179020..180039	-	339	190570628	-	WP0170	-	Putative DNA polymerase III, delta subunit
151	 31.15	-1	180045..180227	-	60	190570629	-	WP0171	-	hypothetical protein
152	 30.86	-1	180342..181151	-	269	190570630	-	WP0172	-	Putative cation ABC transporter
153	 30.46	-1	181145..181492	-	115	190570631	-	WP0173	-	hypothetical protein
154	 36.33	0	181496..182362	-	288	190570632	ispE	WP0174	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
155	 35.02	0	182437..185706	+	1089	190570633	-	WP0175	-	helicase, UvrD/Rep family
156	 31.59	0	185766..186167	-	133	190570634	-	WP0176	-	Putative cytochrome c-type biogenesis protein
157	 27.51	-2	186151..187164	-	337	190570635	-	WP0177	-	Putative outer membrane protein
158	 38.22	+1	187172..187519	-	115	190570636	fdx	WP0178	-	ferredoxin
159	 32.65	0	187757..188776	-	339	190570637	-	WP0179	-	Ankyrin repeat domain protein
160	 35.51	0	188943..189815	+	290	190570638	-	WP0180	-	transposase
161	 31.72	0	189936..191234	-	432	190570639	-	WP0181	-	Putative Na+/H+ antiporter
162	 34.95	0	191333..193066	-	577	190570640	dnaG	WP0182	-	DNA primase
163	 36.68	0	193212..194378	+	388	190570641	-	WP0183	-	3-demethylubiquinone-9 3-methyltransferase/sugar-phosphate isomerase family protein
164	 32.80	0	194486..195616	+	376	190570642	-	WP0184	-	hypothetical protein
165	 34.65	0	195616..196221	+	201	190570643	-	WP0185	-	Putative glycoprotease
166	 28.36	-2	196191..196673	-	160	190570644	-	WP0186	-	hypothetical protein
167	 33.47	0	197012..197722	+	236	190570645	-	WP0187	-	class II aldolase/adducin domain protein
168	 28.86	-1	198811..199458	-	215	190570646	ccmB	WP0190	-	heme exporter protein CcmB
169	 30.95	-1	199567..199944	+	125	190570647	-	WP0191	-	Putative dnaK suppressor protein
170	 31.77	0	201722..202936	-	404	190570648	-	WP0195	-	Ankyrin repeat domain protein
171	 37.55	+1	203187..204467	-	426	190570649	ispG	WP0196	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
172	 34.44	0	204484..205113	-	209	190570650	-	WP0197	-	hypothetical protein
173	 36.02	0	205290..205847	-	185	190570651	-	WP0198	-	hypothetical protein
174	 37.36	+1	206029..208140	-	703	190570652	-	WP0199	-	Putative cell division protein FtsK
175	 29.75	-1	208141..208419	-	92	190570653	-	WP0200	-	YGGT family protein
176	 30.77	-1	209992..210420	-	142	190570654	-	WP0202	-	hypothetical protein
177	 39.36	+1	210515..210763	+	82	190570655	-	WP0203	-	hypothetical protein
178	 35.50	0	211223..212236	-	337	190570656	-	WP0204	-	GTP-binding protein, GTP1/OBG family
179	 37.49	+1	212224..213498	-	424	190570657	eno	WP0205	-	enolase
180	 41.58	+2	213495..213797	-	100	190570658	-	WP0206	-	hypothetical protein
181	 35.60	0	213819..214787	-	322	190570659	-	WP0207	-	murC-like protein
182	 31.37	-1	214827..215438	-	203	190570660	-	WP0208	-	SURF1 family protein
183	 32.08	0	215440..215916	-	158	190570661	bfr	WP0209	-	bacterioferritin
184	 32.28	0	215970..216443	-	157	190570662	-	WP0210	-	hypothetical protein
185	 33.96	0	216443..217084	-	213	190570663	-	WP0211	-	haloacid dehalogenase-like hydrolase
186	 32.41	0	217228..218412	+	394	190570664	-	WP0212	-	hypothetical protein
187	 35.51	0	220492..221364	-	290	190570665	-	WP0215	-	transposase
188	 38.37	+1	221716..223104	-	462	190570666	fumC	WP0216	-	fumarate hydratase, class II
189	 35.07	0	223297..224046	-	249	190570667	-	WP0217	-	Ankyrin repeat domain protein
190	 35.36	0	224107..224748	-	213	190570668	-	WP0218	-	Ankyrin repeat domain protein
191	 34.16	0	224918..227716	-	932	190570669	-	WP0219	-	hypothetical protein
192	 38.59	+1	227825..230884	+	1019	190570670	-	WP0220	-	phosphoribosylformylglycinamidine synthase II domain protein
193	 29.82	-1	230962..231474	+	170	190570671	-	WP0221	-	hypothetical protein
194	 38.34	+1	231897..233015	+	372	190570672	dnaJ	WP0222	-	dnaJ protein
195	 37.31	+1	233185..234819	+	544	190570673	-	WP0223	-	metallo-beta-lactamase family protein
196	 38.51	+1	234866..235213	+	115	190570674	-	WP0224	-	hypothetical protein
197	 32.06	0	235266..236522	+	418	190570675	tolB	WP0225	-	Protein tolB precursor
198	 32.20	0	236561..236914	-	117	190570676	gatC	WP0226	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
34.35	MEAN

2.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.