IslandPathversion 1.0

IslandPath Analysis: Wolbachia pipientis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.35 STD DEV: 2.87
Wolbachia pipientis, complete genome - 1..1482455
1275 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1063	 29.91	-1	1249163..1249630	-	155	190571541	-	WP1161	-	hypothetical protein
1064	 33.33	0	1249763..1250479	-	238	190571542	-	WP1162	-	short chain dehydrogenase
1065	 34.44	0	1250682..1251770	+	362	190571543	carA	WP1163	-	carbamoyl-phosphate synthase, small subunit
1066	 40.75	+2	1252115..1253287	+	390	190571544	tuf	WP1164	-	translation elongation factor tu
1067	 31.78	0	1253302..1253622	+	106	190571545	rpsJ	WP1165	-	30s ribosomal protein s10
1068	 34.99	0	1253632..1254354	+	240	190571546	rplC	WP1166	-	ribosomal protein L3
1069	 31.87	0	1254357..1254971	+	204	190571547	rplD	WP1167	-	ribosomal protein L4
1070	 26.04	-2	1254968..1255255	+	95	190571548	rplW	WP1168	-	ribosomal protein L23
1071	 38.18	+1	1255257..1256081	+	274	190571549	rplB	WP1169	-	ribosomal protein L2
1072	 33.68	0	1256085..1256369	+	94	190571550	rpsS	WP1170	-	ribosomal protein S19
1073	 28.77	-1	1256379..1256729	+	116	190571551	rplV	WP1171	-	ribosomal protein L22
1074	 34.46	0	1256769..1257389	+	206	190571552	rpsC	WP1172	-	ribosomal protein S3
1075	 37.44	+1	1257401..1257814	+	137	190571553	rplP	WP1173	-	ribosomal protein L16
1076	 31.86	0	1257826..1258029	+	67	190571554	rpmC	WP1174	-	50s ribosomal protein l29
1077	 32.47	0	1258022..1258252	+	76	190571555	rpsQ	WP1175	-	ribosomal protein S17
1078	 33.06	0	1258271..1258630	+	119	190571556	rplN	WP1176	-	ribosomal protein L14
1079	 31.13	-1	1258630..1258947	+	105	190571557	rplX	WP1177	-	ribosomal protein L24
1080	 30.91	-1	1258954..1259490	+	178	190571558	rplE	WP1178	-	ribosomal protein L5
1081	 32.69	0	1259503..1259811	+	102	190571559	rspN	WP1179	-	ribosomal protein S14
1082	 33.84	0	1259834..1260229	+	131	190571560	rpsH	WP1180	-	30s ribosomal protein s8
1083	 32.05	0	1260246..1260791	+	181	190571561	rplF	WP1181	-	ribosomal protein L6
1084	 34.95	0	1260797..1261168	+	123	190571562	rpl18	WP1182	-	ribosomal protein L18
1085	 37.43	+1	1261181..1261693	+	170	190571563	rpsE	WP1183	-	ribosomal protein S5
1086	 33.12	0	1261697..1262167	+	156	190571564	rplO	WP1184	-	ribosomal protein L15
1087	 30.25	-1	1262171..1263499	+	442	190571565	secY	WP1185	-	preprotein translocase, SecY subunit
1088	 29.75	-1	1263496..1264137	+	213	190571566	adk	WP1186	-	adenylate kinase
1089	 34.42	0	1264197..1264565	+	122	190571567	rpsM	WP1187	-	ribosomal protein S13
1090	 37.73	+1	1264590..1264976	+	128	190571568	rpsK	WP1188	-	ribosomal protein S11
1091	 33.33	0	1264997..1266064	+	355	190571569	rpoA	WP1189	-	DNA-directed RNA polymerase, alpha subunit
1092	 32.63	0	1266072..1266500	+	142	190571570	rplQ	WP1190	-	ribosomal protein L17
1093	 27.68	-2	1266512..1266865	+	117	190571571	-	WP1191	-	hypothetical protein
1094	 29.19	-1	1266898..1267452	+	184	190571572	atpH	WP1192	-	ATP synthase F1, delta subunit
1095	 36.84	0	1267449..1268990	+	513	190571573	atpA	WP1193	-	ATP synthase F1, alpha subunit
1096	 35.96	0	1269000..1269494	+	164	190571574	greA	WP1194	-	transcription elongation factor GreA
1097	 35.81	0	1269498..1270142	+	214	190571575	ribB	WP1195	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1098	 32.02	0	1270214..1271503	+	429	190571576	-	WP1196	-	peptidase, M48 family
1099	 35.12	0	1271505..1271840	-	111	190571577	-	WP1197	-	hypothetical protein
1100	 34.01	0	1271936..1272670	-	244	190571578	fabG	WP1198	-	3-oxoacyl-(acyl-carrier-protein) reductase
1101	 37.25	+1	1274101..1274304	-	67	190571579	-	WP1200	-	hypothetical protein
1102	 37.56	+1	1274446..1277073	+	875	190571580	ppdK	WP1201	-	pyruvate phosphate dikinase
1103	 32.04	0	1277262..1278494	+	410	190571581	-	WP1202	-	hypothetical protein
1104	 32.58	0	1278502..1278633	+	43	190571582	-	WP1203	-	hypothetical protein
1105	 33.24	0	1278843..1279925	+	360	190571583	-	WP1204	-	efflux transporter, RND family, MFP subunit
1106	 32.06	0	1280047..1280985	+	312	190571584	-	WP1205	-	hypothetical protein
1107	 34.28	0	1281043..1281360	-	105	190571585	-	WP1206	-	glutaredoxin-related protein
1108	 35.62	0	1281377..1281595	-	72	190571586	-	WP1207	-	BolA-like protein
1109	 34.81	0	1282514..1283461	-	315	190571587	-	WP1209	-	transposase
1110	 40.29	+2	1284018..1285340	-	440	190571588	maeB	WP1210	-	NADP-dependent malic enzyme
1111	 35.36	0	1285462..1286004	+	180	190571589	pgsA	WP1211	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1112	 30.86	-1	1287129..1287815	+	228	190571590	-	WP1213	-	competence lipoprotein ComL, putative
1113	 36.44	0	1287823..1288563	+	246	190571591	-	WP1214	-	hypothetical protein
1114	 34.87	0	1288560..1289600	+	346	190571592	-	WP1215	-	M23 peptidase domain protein
1115	 34.02	0	1289584..1290453	+	289	190571593	-	WP1216	-	Putative Band 7 family membrane protein
1116	 32.63	0	1290622..1290906	+	94	190571594	-	WP1217	-	hypothetical protein
1117	 33.80	0	1290911..1291558	+	215	190571595	-	WP1218	-	thiamine pyrophosphokinase
1118	 39.39	+1	1291858..1292055	-	65	190571596	-	WP1219	-	hypothetical protein
1119	 34.04	0	1292102..1294078	-	658	190571597	-	WP1220	-	ankyrin repeat domain protein
1120	 33.25	0	1294157..1295344	-	395	190571598	-	WP1221	-	bicyclomycin resistance protein
1121	 33.48	0	1295455..1296153	+	232	190571599	ubiE	WP1222	-	ubiquinone/menaquinone biosynthesis methlytransferase UbiE
1122	 35.04	0	1296313..1298010	+	565	190571600	-	WP1223	-	ABC transporter, permease/ATP-binding protein
1123	 36.55	0	1298232..1298480	+	82	190571601	-	WP1224	-	hypothetical protein
1124	 35.51	0	1298520..1299392	-	290	190571602	-	WP1225	-	transposase
1125	 28.68	-1	1299579..1300115	+	178	190571603	-	WP1226	-	hypothetical protein
1126	 38.39	+1	1300250..1301950	+	566	190571604	argS	WP1227	-	arginyl-tRNA synthetase
1127	 36.06	0	1301966..1302589	-	207	190571605	-	WP1228	-	heme exporter protein CcmA
1128	 29.17	-1	1302593..1303024	-	143	190571606	-	WP1229	-	hypothetical protein
1129	 33.27	0	1303454..1304992	+	512	190571607	-	WP1230	-	hypothetical protein
1130	 35.15	0	1305182..1305346	-	54	190571608	-	WP1231	-	hypothetical protein
1131	 39.47	+1	1305514..1306752	+	412	190571609	-	WP1232	-	transposase
1132	 37.79	+1	1306819..1307244	-	141	190571610	-	WP1233	-	cytidine and deoxycytidylate deaminase family protein
1133	 29.25	-1	1307244..1307537	-	97	190571611	-	WP1234	-	hypothetical protein
1134	 35.26	0	1307576..1309183	-	535	190571612	pyrG	WP1235	-	CTP synthase
1135	 31.97	0	1309183..1309548	-	121	190571613	-	WP1236	-	preprotein translocase, SecG subunit
1136	 38.29	+1	1309620..1310144	+	174	190571614	-	WP1237	-	hexapeptide transferase family protein
1137	 31.40	-1	1310134..1311168	-	344	190571615	-	WP1238	-	hypothetical protein
1138	 32.00	0	1311396..1312145	-	249	190571616	-	WP1239	-	hypothetical protein
1139	 33.39	0	1312771..1314582	-	603	190571617	glmS	WP1241	-	glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
1140	 29.71	-1	1314591..1315004	-	137	190571618	-	WP1242	-	preprotein translocase, YajC subunit
1141	 34.31	0	1315393..1316208	+	271	190571619	rpsB	WP1243	-	ribosomal protein S2
1142	 34.63	0	1316205..1317050	+	281	190571620	tsf	WP1244	-	translation elongation factor Ts
1143	 34.81	0	1317034..1317777	+	247	190571621	pyrH	WP1245	-	uridylate kinase
1144	 31.36	-1	1317785..1318342	+	185	190571622	frr	WP1246	-	ribosome recycling factor
1145	 31.27	-1	1318536..1319552	+	338	190571623	-	WP1247	-	phosphate ABC transporter, periplasmic phosphate-binding protein
1146	 39.47	+1	1319609..1320847	-	412	190571624	-	WP1248	-	transposase
1147	 31.27	-1	1321008..1321976	-	322	190571625	-	WP1249	-	hypothetical protein
1148	 34.77	0	1322101..1323558	+	485	190571626	-	WP1250	-	Cation transport protein
1149	 36.20	0	1323630..1324187	+	185	190571627	-	WP1251	-	deoxycytidine triphosphate deaminase
1150	 33.14	0	1324188..1325213	-	341	190571628	-	WP1252	-	hypothetical protein
1151	 33.41	0	1325340..1326575	-	411	190571629	-	WP1253	-	Metallophosphoesterase
1152	 32.69	0	1326874..1327959	+	361	190571630	ribA	WP1254	-	GTP cyclohydrolase II
1153	 28.93	-1	1328032..1328712	+	226	190571631	-	WP1255	-	type IV secretion system protein VirB8
1154	 29.06	-1	1328696..1329490	+	264	190571632	-	WP1256	-	type IV secretion system protein VirB9
1155	 36.77	0	1329507..1331018	+	503	190571633	-	WP1257	-	type IV secretion system protein VirB10
1156	 35.85	0	1331020..1332012	+	330	190571634	-	WP1258	-	type IV secretion system protein VirB11
1157	 36.75	0	1332043..1334061	+	672	190571635	-	WP1259	-	type IV secretion system protein VirD4
1158	 39.47	+1	1334630..1335868	-	412	190571636	-	WP1261	-	transposase
1159	 36.52	0	1336502..1338952	-	816	190571637	topA	WP1262	-	DNA topoisomerase I
1160	 29.47	-1	1339042..1339248	+	68	190571638	-	WP1263	-	hypothetical protein
1161	 34.28	0	1339601..1340872	+	423	190571639	-	WP1264	-	major facilitator family transporter
1162	 36.81	0	1340930..1342282	+	450	190571640	radA	WP1265	-	DNA repair protein RadA
34.35	MEAN

2.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.