IslandPathversion 1.0

IslandPath Analysis: Wolbachia pipientis



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.35 STD DEV: 2.87
Wolbachia pipientis, complete genome - 1..1482455
1275 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1004	 35.94	0	1170884..1171882	+	332	190571482	hemB	WP1097	-	delta-aminolevulinic acid dehydratase
1005	 35.51	0	1172261..1173133	+	290	190571483	-	WP1098	-	transposase
1006	 35.51	0	1173875..1174747	-	290	190571484	-	WP1100	-	transposase
1007	 33.73	0	1175516..1178044	-	842	190571485	polA	WP1101	-	DNA polymerase I
1008	 37.42	+1	1178156..1179622	-	488	190571486	gatA	WP1102	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
1009	 35.78	0	1179809..1182181	-	790	190571487	gyrB	WP1103	-	DNA gyrase, B subunit
1010	 32.68	0	1182403..1183635	-	410	190571488	-	WP1104	-	hypothetical protein
1011	 35.07	0	1183706..1184569	-	287	190571489	-	WP1105	-	ankyrin repeat domain protein
1012	 33.77	0	1184804..1185487	+	227	190571490	psd	WP1106	-	phosphatidylserine decarboxylase proenzyme (ec 4.1.1.65) [contains: phosphatidylserine decarboxylase alpha chain; phosphatidylserine decarboxylase beta chain]
1013	 31.13	-1	1185484..1186254	+	256	190571491	-	WP1107	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1014	 34.38	0	1186277..1187614	+	445	190571492	-	WP1108	-	sodium/alanine symporter family protein
1015	 37.15	0	1187617..1189083	+	488	190571493	-	WP1109	-	sodium/alanine symporter family protein
1016	 33.16	0	1189096..1189671	+	191	190571494	-	WP1110	-	UPF0078 membrane protein
1017	 35.51	0	1190221..1191093	-	290	190571495	-	WP1112	-	transposase
1018	 31.24	-1	1191159..1192970	-	603	190571496	-	WP1113	-	hypothetical protein
1019	 34.00	0	1193026..1193922	-	298	190571497	-	WP1114	-	cation efflux family protein
1020	 34.90	0	1198121..1198312	+	63	190571498	-	WP1116	-	hypothetical protein
1021	 36.31	0	1198314..1199624	+	436	190571499	-	WP1117	-	hypothetical protein
1022	 33.33	0	1199715..1200482	-	255	190571500	-	WP1118	-	RNA methyltransferase, TrmH family, group 3
1023	 28.86	-1	1200575..1201066	+	163	190571501	-	WP1119	-	Smr domain family protein
1024	 34.32	0	1201078..1202895	-	605	190571502	uvrC	WP1120	-	excinuclease ABC, C subunit
1025	 33.19	0	1202879..1204987	-	702	190571503	glyS	WP1121	-	glycyl-tRNA synthetase, beta subunit
1026	 37.50	+1	1204991..1205830	-	279	190571504	glyQ	WP1122	-	glycyl-tRNA synthetase, alpha subunit
1027	 31.23	-1	1205875..1206633	-	252	190571505	-	WP1123	-	hypothetical protein
1028	 29.72	-1	1208264..1208512	-	82	190571506	-	WP1125	-	hypothetical protein
1029	 34.70	0	1208638..1209588	+	316	190571507	-	WP1126	-	hypothetical protein
1030	 33.21	0	1209626..1210408	-	260	190571508	xth	WP1127	-	exodeoxyribonuclease III
1031	 32.06	0	1210408..1211115	-	235	190571509	-	WP1128	-	uroporphyrinogen-III synthase
1032	 36.47	0	1211351..1212880	-	509	190571510	-	WP1129	-	hypothetical protein
1033	 32.75	0	1213074..1215122	-	682	190571511	-	WP1130	-	hypothetical protein
1034	 34.88	0	1215219..1216577	+	452	190571512	-	WP1131	-	phosphoglucomutase/phosphomannomutase family protein
1035	 29.76	-1	1216708..1217295	-	195	190571513	-	WP1132	-	membrane protein CvpA
1036	 32.50	0	1217353..1217949	-	198	190571514	ribE	WP1133	-	riboflavin synthase, alpha subunit
1037	 33.56	0	1217990..1219723	-	577	190571515	-	WP1134	-	hypothetical protein
1038	 35.44	0	1220405..1221448	+	347	190571516	pheS	WP1135	-	phenylalanyl-tRNA synthetase, alpha subunit
1039	 36.51	0	1221449..1222675	+	408	190571517	glmU	WP1136	-	bifunctional protein glmu [udp-n-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate n-acetyltransferase]
1040	 33.33	0	1222736..1223296	+	186	190571518	-	WP1137	-	Putative outer membrane protein
1041	 34.51	0	1223493..1224002	+	169	190571519	-	WP1138	-	Putative outer membrane protein
1042	 35.04	0	1224231..1224698	+	155	190571520	-	WP1139	-	Putative outer membrane protein
1043	 30.69	-1	1224917..1225219	+	100	190571521	rplU	WP1140	-	ribosomal protein L21
1044	 38.89	+1	1225230..1225499	+	89	190571522	rpmA	WP1141	-	ribosomal protein L27
1045	 37.02	0	1225624..1226790	+	388	190571523	metK	WP1142	-	S-adenosylmethionine synthetase
1046	 31.53	0	1226900..1227565	+	221	190571524	-	WP1143	-	Putative transcriptional activator, tenA family
1047	 29.09	-1	1227605..1228264	+	219	190571525	-	WP1144	-	Putative transcriptional activator, tenA family
1048	 33.82	0	1228312..1229139	+	275	190571526	coxC	WP1145	-	cytochrome c oxidase, subunit III
1049	 32.13	0	1229140..1229637	+	165	190571527	ruvC	WP1146	-	crossover junction endodeoxyribonuclease RuvC
1050	 33.74	0	1229823..1230800	-	325	190571528	-	WP1147	-	ankyrin repeat domain protein
1051	 35.51	0	1230898..1231770	+	290	190571529	-	WP1148	-	transposase
1052	 30.56	-1	1232184..1232651	-	155	190571530	-	WP1150	-	putative holliday junction resolvase
1053	 35.01	0	1232709..1234493	-	594	190571531	nrdA	WP1151	-	ribonucleoside-diphosphate reductase, alpha subunit
1054	 30.35	-1	1234542..1235612	-	356	190571532	-	WP1152	-	TPR domain protein
1055	 30.18	-1	1239904..1240125	-	73	190571533	-	WP1153	-	hypothetical protein
1056	 26.28	-2	1240186..1240341	-	51	190571534	-	WP1154	-	hypothetical protein
1057	 31.11	-1	1240547..1240681	-	44	190571535	rpmH	WP1155	-	ribosomal protein L34
1058	 31.50	0	1240789..1241877	+	362	190571536	-	WP1156	-	phosphate ABC transporter, permease protein
1059	 37.93	+1	1241974..1243410	+	478	190571537	atpD	WP1157	-	ATP synthase F1, beta subunit
1060	 30.99	-1	1243416..1243757	+	113	190571538	atpC	WP1158	-	ATP synthase F1, epsilon subunit
1061	 33.88	0	1243888..1247334	-	1148	190571539	-	WP1159	-	hypothetical protein
1062	 34.42	0	1247744..1248388	+	214	190571540	-	WP1160	-	transaldolase
1063	 29.91	-1	1249163..1249630	-	155	190571541	-	WP1161	-	hypothetical protein
1064	 33.33	0	1249763..1250479	-	238	190571542	-	WP1162	-	short chain dehydrogenase
1065	 34.44	0	1250682..1251770	+	362	190571543	carA	WP1163	-	carbamoyl-phosphate synthase, small subunit
1066	 40.75	+2	1252115..1253287	+	390	190571544	tuf	WP1164	-	translation elongation factor tu
1067	 31.78	0	1253302..1253622	+	106	190571545	rpsJ	WP1165	-	30s ribosomal protein s10
1068	 34.99	0	1253632..1254354	+	240	190571546	rplC	WP1166	-	ribosomal protein L3
1069	 31.87	0	1254357..1254971	+	204	190571547	rplD	WP1167	-	ribosomal protein L4
1070	 26.04	-2	1254968..1255255	+	95	190571548	rplW	WP1168	-	ribosomal protein L23
1071	 38.18	+1	1255257..1256081	+	274	190571549	rplB	WP1169	-	ribosomal protein L2
1072	 33.68	0	1256085..1256369	+	94	190571550	rpsS	WP1170	-	ribosomal protein S19
1073	 28.77	-1	1256379..1256729	+	116	190571551	rplV	WP1171	-	ribosomal protein L22
1074	 34.46	0	1256769..1257389	+	206	190571552	rpsC	WP1172	-	ribosomal protein S3
1075	 37.44	+1	1257401..1257814	+	137	190571553	rplP	WP1173	-	ribosomal protein L16
1076	 31.86	0	1257826..1258029	+	67	190571554	rpmC	WP1174	-	50s ribosomal protein l29
1077	 32.47	0	1258022..1258252	+	76	190571555	rpsQ	WP1175	-	ribosomal protein S17
1078	 33.06	0	1258271..1258630	+	119	190571556	rplN	WP1176	-	ribosomal protein L14
1079	 31.13	-1	1258630..1258947	+	105	190571557	rplX	WP1177	-	ribosomal protein L24
1080	 30.91	-1	1258954..1259490	+	178	190571558	rplE	WP1178	-	ribosomal protein L5
1081	 32.69	0	1259503..1259811	+	102	190571559	rspN	WP1179	-	ribosomal protein S14
1082	 33.84	0	1259834..1260229	+	131	190571560	rpsH	WP1180	-	30s ribosomal protein s8
1083	 32.05	0	1260246..1260791	+	181	190571561	rplF	WP1181	-	ribosomal protein L6
1084	 34.95	0	1260797..1261168	+	123	190571562	rpl18	WP1182	-	ribosomal protein L18
1085	 37.43	+1	1261181..1261693	+	170	190571563	rpsE	WP1183	-	ribosomal protein S5
1086	 33.12	0	1261697..1262167	+	156	190571564	rplO	WP1184	-	ribosomal protein L15
1087	 30.25	-1	1262171..1263499	+	442	190571565	secY	WP1185	-	preprotein translocase, SecY subunit
1088	 29.75	-1	1263496..1264137	+	213	190571566	adk	WP1186	-	adenylate kinase
1089	 34.42	0	1264197..1264565	+	122	190571567	rpsM	WP1187	-	ribosomal protein S13
1090	 37.73	+1	1264590..1264976	+	128	190571568	rpsK	WP1188	-	ribosomal protein S11
1091	 33.33	0	1264997..1266064	+	355	190571569	rpoA	WP1189	-	DNA-directed RNA polymerase, alpha subunit
1092	 32.63	0	1266072..1266500	+	142	190571570	rplQ	WP1190	-	ribosomal protein L17
1093	 27.68	-2	1266512..1266865	+	117	190571571	-	WP1191	-	hypothetical protein
1094	 29.19	-1	1266898..1267452	+	184	190571572	atpH	WP1192	-	ATP synthase F1, delta subunit
1095	 36.84	0	1267449..1268990	+	513	190571573	atpA	WP1193	-	ATP synthase F1, alpha subunit
1096	 35.96	0	1269000..1269494	+	164	190571574	greA	WP1194	-	transcription elongation factor GreA
1097	 35.81	0	1269498..1270142	+	214	190571575	ribB	WP1195	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1098	 32.02	0	1270214..1271503	+	429	190571576	-	WP1196	-	peptidase, M48 family
1099	 35.12	0	1271505..1271840	-	111	190571577	-	WP1197	-	hypothetical protein
1100	 34.01	0	1271936..1272670	-	244	190571578	fabG	WP1198	-	3-oxoacyl-(acyl-carrier-protein) reductase
1101	 37.25	+1	1274101..1274304	-	67	190571579	-	WP1200	-	hypothetical protein
1102	 37.56	+1	1274446..1277073	+	875	190571580	ppdK	WP1201	-	pyruvate phosphate dikinase
1103	 32.04	0	1277262..1278494	+	410	190571581	-	WP1202	-	hypothetical protein
34.35	MEAN

2.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.